Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 2.2e-39 165.2 86 100.0
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.0e-36 156.4 81 98.8
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 8.5e-36 153.3 79 98.7
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 8.5e-36 153.3 79 98.7
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 2.7e-34 148.3 85 89.4
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 1.0e-33 146.4 81 91.4
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 3.0e-33 144.8 84 88.1
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 3.0e-33 144.8 79 93.7
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 3.9e-33 144.4 84 88.1
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 6.7e-33 143.7 79 92.4
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 6.7e-33 143.7 79 92.4
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 2.0e-32 142.1 79 91.1
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 2.6e-32 141.7 79 92.4
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 4.4e-32 141.0 83 84.3
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 4.4e-32 141.0 81 88.9
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.4e-32 141.0 79 89.9
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.4e-32 141.0 79 89.9
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 4.4e-32 141.0 79 89.9
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 7.4e-32 140.2 81 86.4
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 7.4e-32 140.2 81 86.4
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 7.4e-32 140.2 81 86.4
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 9.7e-32 139.8 84 83.3
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 9.7e-32 139.8 80 88.8
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.3e-31 139.4 84 83.3
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 1.7e-31 139.0 79 88.6
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.7e-31 139.0 79 88.6
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.7e-31 139.0 79 88.6
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 1.7e-31 139.0 79 88.6
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 1.7e-31 139.0 79 88.6
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 2.8e-31 138.3 81 85.2
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.8e-31 138.3 83 83.1
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 2.8e-31 138.3 79 89.9
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 2.8e-31 138.3 79 88.6
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 2.8e-31 138.3 79 87.3
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 3.7e-31 137.9 79 88.6
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 4.8e-31 137.5 79 88.6
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 6.3e-31 137.1 84 84.5
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 8.2e-31 136.7 79 87.3
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 1.1e-30 136.3 81 85.2
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 1.4e-30 136.0 79 86.1
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 1.4e-30 136.0 76 90.8
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 1.8e-30 135.6 79 89.9
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 1.8e-30 135.6 79 84.8
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 2.4e-30 135.2 85 81.2
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 3.1e-30 134.8 84 82.1
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 4.1e-30 134.4 85 81.2
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 4.1e-30 134.4 80 86.2
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 4.1e-30 134.4 79 86.1
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 5.3e-30 134.0 80 86.2
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 5.3e-30 134.0 79 86.1
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 9.1e-30 133.3 79 86.1
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 9.1e-30 133.3 85 81.2
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 9.1e-30 133.3 84 81.0
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 9.1e-30 133.3 81 84.0
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.2e-29 132.9 80 86.2
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.2e-29 132.9 79 83.5
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 1.2e-29 132.9 85 80.0
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 1.2e-29 132.9 83 81.9
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 1.6e-29 132.5 79 84.8
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 1.6e-29 132.5 79 84.8
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 2.0e-29 132.1 79 84.8
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 2.0e-29 132.1 85 78.8
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 2.6e-29 131.7 79 84.8
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 2.6e-29 131.7 79 84.8
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 3.5e-29 131.3 79 84.8
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 5.9e-29 130.6 85 76.5
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.0e-28 129.8 80 82.5
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 1.0e-28 129.8 79 82.3
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 1.0e-28 129.8 90 80.0
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 1.3e-28 129.4 81 82.7
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 1.7e-28 129.0 79 82.3
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 1.7e-28 129.0 79 82.3
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 1.7e-28 129.0 80 83.8
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 2.2e-28 128.6 85 77.6
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 2.2e-28 128.6 79 82.3
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 2.9e-28 128.3 79 81.0
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 2.9e-28 128.3 83 80.7
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 5.0e-28 127.5 79 83.5
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 5.0e-28 127.5 79 82.3
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 8.5e-28 126.7 105 68.6
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 8.5e-28 126.7 84 76.2
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 1.1e-27 126.3 79 78.5
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 1.5e-27 125.9 84 75.0
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 2.5e-27 125.2 84 73.8
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 3.2e-27 124.8 79 79.7
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 3.2e-27 124.8 79 81.0
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 3.2e-27 124.8 63 98.4
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 3.2e-27 124.8 84 75.0
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 4.2e-27 124.4 81 76.5
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 4.2e-27 124.4 80 83.8
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 4.2e-27 124.4 80 83.8
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 9.4e-27 123.2 75 82.7
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 9.4e-27 123.2 81 76.5
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 1.2e-26 122.9 77 79.2
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 1.4e-25 119.4 75 81.3
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 1.8e-25 119.0 82 72.0
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.8e-25 119.0 79 74.7
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 6.7e-25 117.1 79 72.2
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 1.5e-24 115.9 79 74.7
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 2.0e-24 115.5 79 70.9
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 4.8e-23 110.9 79 72.2
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 6.3e-23 110.5 79 70.9
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 9.1e-22 106.7 79 69.6
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 1.2e-21 106.3 128 50.8
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 7.2e-19 97.1 56 82.1
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 4.2e-11 71.2 69 58.0
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 5.5e-11 70.9 41 82.9
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 1.6e-10 69.3 49 67.3
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 3.0e-09 65.1 54 66.7
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 2.0e-08 62.4 30 96.7


User provided reference genes

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