Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.9e-102 375.9 200 100.0
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 7.7e-64 247.7 190 68.9
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 5.5e-62 241.5 190 66.8
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.5e-62 241.5 190 66.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.8e-60 234.2 190 71.6
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.3e-59 232.3 190 71.1
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 1.4e-49 200.3 190 58.9
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 3.4e-43 179.1 107 83.2
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.8e-41 173.3 195 50.8
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 5.4e-41 171.8 195 50.3
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 4.5e-40 168.7 195 49.7
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.3e-39 167.2 193 51.3
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 2.3e-39 166.4 195 49.2
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 2.9e-39 166.0 190 50.5
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 6.6e-39 164.9 195 49.7
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 8.6e-39 164.5 189 50.8
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.5e-38 163.7 190 51.6
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 4.3e-38 162.2 195 48.2
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 9.5e-38 161.0 191 48.7
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 9.5e-38 161.0 191 48.7
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.3e-36 156.4 190 48.4
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 6.8e-36 154.8 190 46.8
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.2e-35 154.1 190 49.5
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 3.4e-35 152.5 190 45.3
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 7.5e-35 151.4 190 47.9
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 7.5e-35 151.4 190 45.8
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 9.8e-35 151.0 190 45.8
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 9.8e-35 151.0 191 45.5
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.2e-34 149.8 189 45.0
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.2e-34 149.8 189 45.0
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.9e-34 149.4 191 46.1
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.9e-34 148.7 189 46.0
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.9e-34 148.7 189 46.0
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 8.3e-34 147.9 192 44.3
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 8.3e-34 147.9 192 44.8
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.1e-33 147.5 193 46.1
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.4e-33 147.1 189 46.6
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.4e-33 147.1 189 44.4
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 3.2e-33 146.0 195 45.1
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.2e-32 144.1 192 45.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.2e-32 144.1 195 45.6
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.2e-32 144.1 195 44.1
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.6e-32 143.7 193 44.6
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.7e-32 142.9 190 44.2
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 3.5e-32 142.5 187 44.4
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 3.5e-32 142.5 193 44.0
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 6.0e-32 141.7 194 42.3
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 6.0e-32 141.7 193 44.6
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.3e-31 140.6 192 43.2
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.3e-31 140.6 189 42.9
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.3e-31 140.6 189 42.9
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 2.3e-31 139.8 190 42.6
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 5.0e-31 138.7 187 43.9
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 5.0e-31 138.7 190 43.2
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.0e-31 138.7 192 43.8
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 5.0e-31 138.7 190 43.2
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 6.6e-31 138.3 190 43.7
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 8.6e-31 137.9 192 42.7
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 8.6e-31 137.9 189 43.9
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 8.6e-31 137.9 198 42.9
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.1e-30 137.5 191 43.5
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.1e-30 137.5 191 43.5
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.5e-30 136.3 206 39.3
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 3.3e-30 136.0 192 42.7
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 4.3e-30 135.6 194 42.8
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.3e-30 135.6 192 43.8
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 9.5e-30 134.4 198 43.4
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.2e-29 134.0 190 41.6
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.6e-29 133.7 189 42.3
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 2.8e-29 132.9 199 40.7
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.8e-29 132.9 193 43.0
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 8.0e-29 131.3 189 41.3
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.1e-28 131.0 195 41.5
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 4.0e-28 129.0 190 41.6
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.0e-28 129.0 189 41.8
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 4.0e-28 129.0 198 43.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 5.2e-28 128.6 189 41.8
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 5.2e-28 128.6 190 41.6
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 6.8e-28 128.3 190 41.1
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 8.9e-28 127.9 188 42.6
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 1.2e-27 127.5 201 40.3
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 2.0e-27 126.7 190 43.2
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.0e-27 126.7 191 41.9
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.0e-27 126.7 193 43.5
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 2.6e-27 126.3 189 40.7
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 2.6e-27 126.3 190 40.5
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 3.4e-27 125.9 189 41.8
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.4e-27 125.9 190 37.4
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 4.4e-27 125.6 193 40.4
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 4.4e-27 125.6 191 40.8
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 7.5e-27 124.8 189 39.2
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 7.5e-27 124.8 189 39.2
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.3e-26 124.0 189 39.2
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.3e-26 124.0 190 40.5
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 2.2e-26 123.2 196 39.8
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 3.7e-26 122.5 189 39.2
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 3.7e-26 122.5 189 39.2
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 3.7e-26 122.5 189 39.2
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.4e-25 120.6 156 49.4
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.4e-25 119.8 228 34.2
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.2e-24 117.5 195 40.5
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.0e-24 116.7 194 37.6
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 3.0e-23 112.8 197 38.1
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.4e-20 104.0 176 39.2
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.8e-20 103.6 188 34.0
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 4.0e-20 102.4 249 32.9
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 6.8e-20 101.7 205 33.2
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 2.0e-19 100.1 135 47.4
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.0e-19 100.1 225 35.6
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 4.4e-19 99.0 211 37.4
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 9.9e-19 97.8 218 33.0
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.2e-18 96.7 198 32.3
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 6.4e-18 95.1 102 51.0
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 3.2e-17 92.8 171 34.5
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.1e-17 92.4 116 46.6
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.0e-15 87.8 200 31.5
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.5e-14 84.0 118 47.5
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.5e-14 83.2 137 36.5
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.3e-14 82.8 204 31.9
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 4.3e-14 82.4 47 74.5
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 4.3e-14 82.4 60 65.0
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.6e-13 80.5 133 39.1
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 2.8e-13 79.7 60 63.3
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.4e-12 77.4 39 79.5
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 2.4e-12 76.6 60 58.3
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.4e-12 76.6 149 35.6
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 2.2e-10 70.1 75 52.0
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.2e-10 70.1 107 37.4
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 9.2e-09 64.7 51 56.9
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 2.7e-08 63.2 40 65.0
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.6e-08 62.4 41 63.4
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 6.6e-07 58.5 40 55.0
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 6.6e-07 58.5 41 53.7
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 1.1e-06 57.8 41 56.1
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.9e-06 57.0 40 52.5
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 1.9e-06 57.0 41 56.1
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 4.3e-06 55.8 40 52.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 7.3e-06 55.1 119 35.3
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 9.6e-06 54.7 41 58.5


User provided reference genes

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