Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.5e-173 612.8 337 100.0
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 1.1e-163 580.1 337 93.5
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 3.7e-159 565.1 337 92.0
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 3.7e-159 565.1 337 92.0
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.8e-158 562.8 337 91.7
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.8e-158 562.8 338 92.6
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.5e-157 559.7 337 91.7
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 3.4e-157 558.5 338 90.5
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.3e-156 556.6 337 89.9
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 8.5e-156 553.9 337 90.2
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.2e-155 552.0 337 89.0
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 3.2e-155 552.0 337 85.8
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 3.2e-155 552.0 337 89.9
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 3.2e-155 552.0 337 90.8
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 7.2e-155 550.8 337 89.6
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 7.2e-155 550.8 337 89.3
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 9.4e-155 550.4 337 92.0
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 9.4e-155 550.4 337 89.3
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 1.2e-154 550.1 337 89.9
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.6e-154 549.7 337 89.3
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.1e-154 549.3 337 89.0
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 7.9e-154 547.4 349 88.5
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.3e-153 545.8 337 89.0
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.3e-153 545.8 337 89.0
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 3.0e-153 545.4 337 89.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 3.0e-153 545.4 337 88.7
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 5.1e-153 544.7 337 88.4
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 6.7e-153 544.3 337 89.6
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 4.3e-152 541.6 337 88.7
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 2.2e-151 539.3 336 87.2
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 2.2e-151 539.3 336 87.2
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 4.8e-151 538.1 337 88.7
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.1e-150 537.0 338 87.9
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.4e-150 536.6 337 88.7
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 4.1e-150 535.0 337 89.6
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.1e-150 535.0 338 86.7
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 6.9e-150 534.3 337 86.6
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 9.1e-150 533.9 338 88.2
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 9.1e-150 533.9 337 88.1
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.5e-149 533.1 337 91.1
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.0e-149 532.7 337 86.4
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 7.7e-149 530.8 339 87.0
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.3e-148 530.0 337 86.9
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.3e-148 530.0 337 86.1
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 2.9e-148 528.9 337 86.1
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 5.0e-148 528.1 337 87.8
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 6.5e-148 527.7 338 84.6
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 8.5e-148 527.3 338 82.8
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 8.5e-148 527.3 372 81.2
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.4e-147 526.6 338 83.1
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.4e-147 526.6 341 86.8
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.9e-147 526.2 353 84.7
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.9e-147 526.2 338 86.4
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 2.5e-147 525.8 338 84.9
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 3.2e-147 525.4 338 82.5
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.2e-147 524.2 365 84.1
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.2e-147 524.2 365 84.1
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.1e-146 522.7 337 80.4
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 2.1e-146 522.7 338 86.7
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 2.1e-146 522.7 338 86.7
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 2.7e-146 522.3 355 82.8
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 2.7e-146 522.3 355 82.8
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.7e-146 522.3 338 86.7
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.7e-146 522.3 338 86.7
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 6.1e-146 521.2 337 86.9
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 1.4e-145 520.0 338 85.8
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 2.3e-145 519.2 339 85.5
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 3.0e-145 518.8 340 84.7
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 5.1e-145 518.1 340 86.2
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 6.7e-145 517.7 338 84.0
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 8.8e-145 517.3 340 86.2
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 2.0e-144 516.2 337 86.4
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 2.6e-144 515.8 339 85.3
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 9.7e-144 513.8 339 85.5
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 9.7e-144 513.8 337 85.5
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.1e-142 510.4 365 79.7
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.1e-142 510.4 321 87.5
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.1e-142 510.4 359 81.9
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 9.1e-142 507.3 330 85.5
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.5e-141 506.5 338 82.5
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.5e-141 506.5 338 82.5
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 4.5e-141 505.0 330 87.0
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 2.2e-140 502.7 377 77.2
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.9e-140 502.3 346 82.1
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.5e-139 500.0 337 84.3
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.5e-139 499.2 321 86.9
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.2e-139 498.8 337 83.7
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 4.2e-139 498.4 349 81.4
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 4.2e-139 498.4 338 83.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.7e-138 495.7 337 77.7
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 3.6e-138 495.4 352 80.7
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 6.1e-138 494.6 337 81.3
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.0e-138 494.2 337 81.6
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.0e-137 493.8 347 79.8
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.0e-137 493.8 321 86.0
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.3e-137 492.7 340 78.8
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 4.0e-137 491.9 333 83.5
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 8.8e-137 490.7 349 80.5
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 1.5e-136 490.0 337 81.0
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 9.1e-134 480.7 337 74.5
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.0e-133 479.6 368 75.8
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 4.5e-133 478.4 325 83.7
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 4.5e-133 478.4 325 83.7
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 5.5e-131 471.5 337 79.5
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 1.8e-129 466.5 305 86.9
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.0e-124 450.7 338 77.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.9e-123 446.4 337 76.6
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 4.9e-119 431.8 334 78.1
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.1e-118 427.6 340 78.8
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.2e-117 427.2 352 71.9
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.2e-117 427.2 274 90.1
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.0e-117 426.4 284 84.5
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 3.8e-116 422.2 516 53.9
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 8.3e-111 404.4 223 87.0
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 5.6e-107 391.7 321 74.8
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 5.8e-104 381.7 320 74.1
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.5e-104 381.3 337 70.6
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.3e-100 370.5 255 85.9
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.3e-95 354.0 277 74.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 6.0e-93 345.1 337 65.6
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 8.9e-89 331.3 381 48.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.6e-82 310.5 330 53.3
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 5.8e-80 302.0 147 94.6
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 5.1e-68 262.3 183 71.6
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 6.9e-65 251.9 211 76.8
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.0e-60 238.0 326 45.7
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 6.7e-52 208.8 116 82.8
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 6.5e-47 192.2 165 67.9
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.3e-43 179.5 82 98.8
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.4e-38 164.5 91 87.9
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.6e-37 161.0 90 95.6
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.1e-35 154.8 90 90.0
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 5.0e-23 112.8 64 93.8
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 2.5e-22 110.5 55 92.7
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.8e-17 94.4 233 29.6
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 4.1e-17 93.2 201 28.4
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.5e-15 85.5 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.2e-12 76.3 78 79.5
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.2e-11 75.1 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 2.0e-11 74.3 41 87.8
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 8.3e-10 68.9 30 93.3


User provided reference genes

Program Settings