Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0120051 Rosa chinensis HOM05D000725 ORTHO05D003141 5.5e-49 197.2 92 100.0
FvH4_2g09760 Fragaria vesca HOM05D000725 ORTHO05D003141 4.4e-22 107.8 90 61.1
FAN15G1535 Fragaria x ananassa HOM05D000725 ORTHO05D003141 4.4e-22 107.8 90 61.1
FAN24G2419 Fragaria x ananassa HOM05D000725 ORTHO05D003141 4.4e-22 107.8 90 61.1
FAN27G2965 Fragaria x ananassa HOM05D000725 ORTHO05D003141 4.4e-22 107.8 90 61.1
CiPaw.06G132300 Carya illinoinensis HOM05D000725 ORTHO05D003141 7.5e-22 107.1 90 58.9
RcHm_v2.0_Chr6g0266061 Rosa chinensis HOM05D000725 ORTHO05D003141 9.8e-22 106.7 90 61.1
QL11p045293 Quercus lobata HOM05D000725 ORTHO05D003141 1.3e-21 106.3 90 60.0
Manes.11G082500 Manihot esculenta HOM05D000725 ORTHO05D003141 3.7e-21 104.8 90 60.0
CiPaw.05G070200 Carya illinoinensis HOM05D000725 ORTHO05D003141 1.1e-20 103.2 90 56.7
CANSAT11G1287 Cannabis sativa HOM05D000725 ORTHO05D003141 1.4e-20 102.8 90 57.8
Eucgr.G01701 Eucalyptus grandis HOM05D000725 ORTHO05D003141 1.4e-20 102.8 89 58.4
Manes.04G086500 Manihot esculenta HOM05D000725 ORTHO05D003141 1.4e-20 102.8 90 56.7
Potri.009G120700 Populus trichocarpa HOM05D000725 ORTHO05D003141 1.8e-20 102.4 90 57.8
ClCG11G004110 Citrullus lanatus HOM05D000725 ORTHO05D003141 4.1e-20 101.3 90 57.8
MD10G1068100 Malus domestica HOM05D000725 ORTHO05D003141 4.1e-20 101.3 90 55.6
Potri.004G159000 Populus trichocarpa HOM05D000725 ORTHO05D003141 4.1e-20 101.3 115 49.6
Glyma.13G201800 Glycine max HOM05D000725 ORTHO05D003141 7.0e-20 100.5 90 57.8
TAR625G0592 Trochodendron aralioides HOM05D000725 ORTHO05D003141 7.0e-20 100.5 90 57.8
Prupe.8G090000 Prunus persica HOM05D000725 ORTHO05D003141 9.1e-20 100.1 90 56.7
TPR.G23932 Trifolium pratense HOM05D000725 ORTHO05D003141 9.1e-20 100.1 90 58.9
AUR62016778 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.2e-19 99.8 90 55.6
MELO3C023332.2 Cucumis melo HOM05D000725 ORTHO05D003141 1.2e-19 99.8 90 56.7
CsaV3_2G015070 Cucumis sativus L. HOM05D000725 ORTHO05D003141 1.2e-19 99.8 90 56.7
PSO782G2318 Papaver somniferum HOM05D000725 ORTHO05D003141 1.2e-19 99.8 89 57.3
QL11p045305 Quercus lobata HOM05D000725 ORTHO05D003141 1.2e-19 99.8 90 57.8
TWI75G0750 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 1.2e-19 99.8 90 53.3
vmacro02076 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 1.2e-19 99.8 90 54.4
TAR381G0568 Trochodendron aralioides HOM05D000725 ORTHO05D003141 1.6e-19 99.4 90 54.4
Gohir.A13G032200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 2.0e-19 99.0 90 55.6
Gohir.D13G030500 Gossypium hirsutum HOM05D000725 ORTHO05D003141 2.0e-19 99.0 90 55.6
Gorai.013G034700 Gossypium raimondii HOM05D000725 ORTHO05D003141 2.0e-19 99.0 90 55.6
Medtr2g437480 Medicago truncatula HOM05D000725 ORTHO05D003141 2.0e-19 99.0 90 60.0
AUR62011279 Chenopodium quinoa HOM05D000725 ORTHO05D003141 2.7e-19 98.6 90 54.4
Medtr8g037345 Medicago truncatula HOM05D000725 ORTHO05D003141 2.7e-19 98.6 90 58.9
COL.COLO4_25996 Corchorus olitorius HOM05D000725 ORTHO05D003141 3.5e-19 98.2 90 53.3
Haze_02328 Corylus avellana HOM05D000725 ORTHO05D003141 3.5e-19 98.2 117 47.0
Lalb_Chr01g0008001 Lupinus albus HOM05D000725 ORTHO05D003141 3.5e-19 98.2 90 57.8
SHI05568 Sapria himalayana HOM05D000725 ORTHO05D003141 3.5e-19 98.2 91 53.8
Ah.01g019080 Amaranthus hybridus HOM05D000725 ORTHO05D003141 4.5e-19 97.8 90 55.6
CSS0026816 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 4.5e-19 97.8 90 55.6
CSS0026935 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 4.5e-19 97.8 90 55.6
ECA234G1026 Erigeron canadensis HOM05D000725 ORTHO05D003141 4.5e-19 97.8 90 55.6
HanXRQChr12g0374341 Helianthus annuus HOM05D000725 ORTHO05D003141 4.5e-19 97.8 90 53.3
Lalb_Chr19g0132271 Lupinus albus HOM05D000725 ORTHO05D003141 4.5e-19 97.8 90 57.8
EL10Ac9g21686 Beta vulgaris HOM05D000725 ORTHO05D003141 5.9e-19 97.4 90 55.6
Haze_02322 Corylus avellana HOM05D000725 ORTHO05D003141 5.9e-19 97.4 90 54.4
Haze_02329 Corylus avellana HOM05D000725 ORTHO05D003141 5.9e-19 97.4 90 54.4
Gohir.A12G042200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 5.9e-19 97.4 90 53.3
Gohir.D12G030100 Gossypium hirsutum HOM05D000725 ORTHO05D003141 5.9e-19 97.4 90 53.3
Gorai.008G031000 Gossypium raimondii HOM05D000725 ORTHO05D003141 5.9e-19 97.4 90 53.3
vmacro17927 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 5.9e-19 97.4 90 54.4
Ca_23901_v3 Cicer arietinum L. HOM05D000725 ORTHO05D003141 7.7e-19 97.1 90 57.8
PSO063G2790 Papaver somniferum HOM05D000725 ORTHO05D003141 7.7e-19 97.1 89 56.2
Psat4g193880 Pisum sativum HOM05D000725 ORTHO05D003141 7.7e-19 97.1 90 56.7
PGR042G0782 Punica granatum HOM05D000725 ORTHO05D003141 7.7e-19 97.1 90 54.4
TPR.G1890 Trifolium pratense HOM05D000725 ORTHO05D003141 7.7e-19 97.1 86 59.3
Cc02_g17200 Coffea canephora HOM05D000725 ORTHO05D003141 1.0e-18 96.7 90 53.3
Psat7g126840 Pisum sativum HOM05D000725 ORTHO05D003141 1.0e-18 96.7 90 58.9
Thecc.02G079900 Theobroma cacao HOM05D000725 ORTHO05D003141 1.0e-18 96.7 90 54.4
vmacro17455 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 1.0e-18 96.7 90 54.4
Lsat_1_v5_gn_9_107821 Lactuca sativa HOM05D000725 ORTHO05D003141 1.3e-18 96.3 90 54.4
Rhsim05G0070700 Rhododendron simsii HOM05D000725 ORTHO05D003141 1.3e-18 96.3 90 54.4
Sed0003616 Sechium edule HOM05D000725 ORTHO05D003141 1.3e-18 96.3 90 56.7
TWI79G0585 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 1.3e-18 96.3 90 53.3
arahy.Tifrunner.gnm1.ann1.S1J40P Arachis hypogaea HOM05D000725 ORTHO05D003141 1.7e-18 95.9 90 56.7
arahy.Tifrunner.gnm1.ann1.XRRC6E Arachis hypogaea HOM05D000725 ORTHO05D003141 1.7e-18 95.9 90 56.7
Glyma.12G236100 Glycine max HOM05D000725 ORTHO05D003141 1.7e-18 95.9 90 55.6
PGR042G3366 Punica granatum HOM05D000725 ORTHO05D003141 1.7e-18 95.9 90 53.3
Duzib248G0474 Durio zibethinus HOM05D000725 ORTHO05D003141 2.2e-18 95.5 90 54.4
Lj7A123T31 Lonicera japonica HOM05D000725 ORTHO05D003141 2.2e-18 95.5 90 53.3
PSO832G3117 Papaver somniferum HOM05D000725 ORTHO05D003141 2.2e-18 95.5 89 55.1
VMungo1127G0892 Vigna mungo HOM05D000725 ORTHO05D003141 2.2e-18 95.5 90 55.6
Lsat_1_v5_gn_5_120421 Lactuca sativa HOM05D000725 ORTHO05D003141 2.9e-18 95.1 90 55.6
Actinidia11756 Actinidia chinensis HOM05D000725 ORTHO05D003141 3.8e-18 94.7 90 53.3
Actinidia27876 Actinidia chinensis HOM05D000725 ORTHO05D003141 3.8e-18 94.7 90 53.3
THA.LOC104819623 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 5.0e-18 94.4 90 52.2
Dinv23485 Davidia involucrata HOM05D000725 ORTHO05D003141 6.5e-18 94.0 90 52.2
Sed0009304 Sechium edule HOM05D000725 ORTHO05D003141 6.5e-18 94.0 89 52.8
Lj1g0015165 Lotus japonicus HOM05D000725 ORTHO05D003141 8.5e-18 93.6 90 55.6
Lj5g0003943 Lotus japonicus HOM05D000725 ORTHO05D003141 8.5e-18 93.6 90 55.6
Lj5g0009315 Lotus japonicus HOM05D000725 ORTHO05D003141 8.5e-18 93.6 90 55.6
Lj5g0015696 Lotus japonicus HOM05D000725 ORTHO05D003141 8.5e-18 93.6 90 55.6
Lj6g0007539 Lotus japonicus HOM05D000725 ORTHO05D003141 8.5e-18 93.6 90 55.6
PSO210G6882 Papaver somniferum HOM05D000725 ORTHO05D003141 8.5e-18 93.6 89 53.9
AT2G16390 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 1.1e-17 93.2 90 53.3
HanXRQChr03g0069421 Helianthus annuus HOM05D000725 ORTHO05D003141 1.1e-17 93.2 90 52.2
Phvul.011G210600 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 1.1e-17 93.2 90 54.4
CANSAT11G1508 Cannabis sativa HOM05D000725 ORTHO05D003141 1.5e-17 92.8 90 53.3
Lj5A193T102 Lonicera japonica HOM05D000725 ORTHO05D003141 1.5e-17 92.8 90 52.2
QL11p045326 Quercus lobata HOM05D000725 ORTHO05D003141 1.5e-17 92.8 90 52.2
HanXRQChr03g0069371 Helianthus annuus HOM05D000725 ORTHO05D003141 1.9e-17 92.4 90 53.3
Nitab4.5_0003234g0070 Nicotiana tabacum HOM05D000725 ORTHO05D003141 1.9e-17 92.4 90 53.3
Nitab4.5_0012853g0020 Nicotiana tabacum HOM05D000725 ORTHO05D003141 1.9e-17 92.4 90 53.3
Lj3g0000422 Lotus japonicus HOM05D000725 ORTHO05D003141 2.5e-17 92.0 90 54.4
Nn1g05795 Nelumbo nucifera HOM05D000725 ORTHO05D003141 2.5e-17 92.0 90 52.2
RcHm_v2.0_Chr1g0330461 Rosa chinensis HOM05D000725 ORTHO05D003141 2.5e-17 92.0 90 54.4
BcaB08g34646 Brassica carinata HOM05D000725 ORTHO05D003141 3.2e-17 91.7 90 52.2
CAN.G1544.11 Capsicum annuum HOM05D000725 ORTHO05D003141 3.2e-17 91.7 90 51.1
Dinv42034 Davidia involucrata HOM05D000725 ORTHO05D003141 3.2e-17 91.7 90 48.9
Thhalv10022532m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 3.2e-17 91.7 90 52.2
Rhsim11G0180800 Rhododendron simsii HOM05D000725 ORTHO05D003141 3.2e-17 91.7 90 52.2
Sp3g29660 Schrenkiella parvula HOM05D000725 ORTHO05D003141 3.2e-17 91.7 90 52.2
SGA_v2.0_scaffold58G20498 Striga asiatica HOM05D000725 ORTHO05D003141 3.2e-17 91.7 90 54.4
Oeu041616.1 Olea europaea HOM05D000725 ORTHO05D003141 4.2e-17 91.3 90 53.3
Ciclev10027795m.g Citrus clementina HOM05D000725 ORTHO05D003141 5.5e-17 90.9 90 51.1
Migut.B00205 Erythranthe guttata HOM05D000725 ORTHO05D003141 5.5e-17 90.9 90 50.0
Atru.chr5.3086 Acer truncatum HOM05D000725 ORTHO05D003141 7.2e-17 90.5 86 53.5
Aa31LG8G13750 Aethionema arabicum HOM05D000725 ORTHO05D003141 7.2e-17 90.5 90 51.1
PSO731G0040 Papaver somniferum HOM05D000725 ORTHO05D003141 7.2e-17 90.5 89 51.7
Peaxi162Scf00016g00426 Petunia axillaris HOM05D000725 ORTHO05D003141 7.2e-17 90.5 90 50.0
Phvul.011G210800 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 7.2e-17 90.5 88 52.3
Solyc01g109970.3 Solanum lycopersicum HOM05D000725 ORTHO05D003141 7.2e-17 90.5 90 51.1
Sopen01g052160 Solanum pennellii HOM05D000725 ORTHO05D003141 7.2e-17 90.5 90 51.1
VMungo1127G1148 Vigna mungo HOM05D000725 ORTHO05D003141 7.2e-17 90.5 88 52.3
BcaC01g03023 Brassica carinata HOM05D000394 ORTHO05D003141 9.5e-17 90.1 90 51.1
A03p45780 Brassica napus HOM05D000394 ORTHO05D003141 9.5e-17 90.1 90 51.1
C03p57010 Brassica napus HOM05D000394 ORTHO05D003141 9.5e-17 90.1 90 51.1
BolC3t17979H Brassica oleracea HOM05D000394 ORTHO05D003141 9.5e-17 90.1 90 51.1
BraA03t13708Z Brassica rapa HOM05D000394 ORTHO05D003141 9.5e-17 90.1 90 51.1
DCAR_003655 Daucus carota HOM05D000725 ORTHO05D003141 1.2e-16 89.7 90 52.2
Sc14g0002030 Simmondsia chinensis HOM05D000725 ORTHO05D003141 1.2e-16 89.7 90 50.0
PGSC0003DMG400030952 Solanum tuberosum HOM05D000725 ORTHO05D003141 1.2e-16 89.7 90 50.0
Carub.0003s3016 Capsella rubella HOM05D000725 ORTHO05D003141 1.6e-16 89.4 90 51.1
Ah.01g009440 Amaranthus hybridus HOM05D000725 ORTHO05D003141 2.8e-16 88.6 90 45.6
PSO700G0205 Papaver somniferum HOM05D000725 ORTHO05D003141 2.8e-16 88.6 89 50.6
CARHR106640 Cardamine hirsuta HOM05D000725 ORTHO05D003141 3.6e-16 88.2 90 50.0
Lj6g0012773 Lotus japonicus HOM05D000725 ORTHO05D003141 3.6e-16 88.2 86 55.8
Sabra04G0106400 Salix brachista HOM05D000725 ORTHO05D003141 3.6e-16 88.2 90 51.1
Hund06399 Selenicereus undatus HOM05D000725 ORTHO05D003141 4.7e-16 87.8 90 47.8
GSVIVG01024225001 Vitis vinifera HOM05D000725 ORTHO05D003141 1.4e-15 86.3 80 53.8
AUR62010106 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.8e-15 85.9 90 44.4
AUR62013100 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.8e-15 85.9 90 44.4
COL.COLO4_15200 Corchorus olitorius HOM05D000725 ORTHO05D003141 1.8e-15 85.9 90 47.8
MSTRG.16829 Avicennia marina HOM05D000725 ORTHO05D003141 2.3e-15 85.5 90 50.0
EL10Ac9g21454 Beta vulgaris HOM05D000725 ORTHO05D003141 4.0e-15 84.7 90 45.6
Hund06249 Selenicereus undatus HOM05D000725 ORTHO05D003141 8.8e-15 83.6 89 47.2
AT2G21450 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 2.6e-14 82.0 83 50.6
Os06g0255700 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 3.4e-14 81.6 90 47.8
Os07g0434500 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 3.4e-14 81.6 90 47.8
Aqoxy5G01538 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 4.4e-14 81.3 90 45.6
AL4G10630 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 4.4e-14 81.3 90 46.7
Prupe.8G089900 Prunus persica HOM05D000725 ORTHO05D003141 7.5e-14 80.5 90 46.7
Carub.0004s0050 Capsella rubella HOM05D000725 ORTHO05D003141 9.8e-14 80.1 64 56.2
Cc00_g19470 Coffea canephora HOM05D000725 ORTHO05D003141 9.8e-14 80.1 64 59.4
unitig_21.g20795 Utricularia gibba HOM05D000725 ORTHO05D003141 9.8e-14 80.1 64 60.9
COL.COLO4_25997 Corchorus olitorius HOM05D000725 ORTHO05D003141 1.3e-13 79.7 90 46.7
Thhalv10000722m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 1.3e-13 79.7 64 57.8
Sp4g15610 Schrenkiella parvula HOM05D000725 ORTHO05D003141 1.3e-13 79.7 64 57.8
Aa31LG7G15070 Aethionema arabicum HOM05D000725 ORTHO05D003141 1.7e-13 79.3 84 50.0
MBI11_g32386_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D003141 1.7e-13 79.3 90 46.7
MD05G1059900 Malus domestica HOM05D000725 ORTHO05D003141 1.7e-13 79.3 90 45.6
Aqoxy5G01532 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 2.2e-13 79.0 89 46.1
BcaC02g07841 Brassica carinata HOM05D000725 ORTHO05D003141 2.8e-13 78.6 64 56.2
C04p62740 Brassica napus HOM05D000725 ORTHO05D003141 2.8e-13 78.6 64 56.2
BolC4t27758H Brassica oleracea HOM05D000725 ORTHO05D003141 2.8e-13 78.6 64 56.2
BraA04t18064Z Brassica rapa HOM05D000725 ORTHO05D003141 2.8e-13 78.6 64 57.8
DCAR_001556 Daucus carota HOM05D000725 ORTHO05D003141 2.8e-13 78.6 64 54.7
CDE06G0228 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 4.9e-13 77.8 90 41.1
A04p25600 Brassica napus HOM05D000725 ORTHO05D003141 6.3e-13 77.4 64 56.2
Zm00001eb173050 Zea mays HOM05D000725 ORTHO05D003141 6.3e-13 77.4 90 44.4
Os03g0165266 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 1.1e-12 76.6 90 44.4
CARHR112360 Cardamine hirsuta HOM05D000725 ORTHO05D003141 1.4e-12 76.3 64 53.1
CDE03G0361 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 1.4e-12 76.3 90 40.0
DCAR_028963 Daucus carota HOM05D000725 ORTHO05D003141 1.8e-12 75.9 90 47.8
Os08g0243866 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 4.1e-12 74.7 64 56.2
Zm00001eb416780 Zea mays HOM05D000725 ORTHO05D003141 7.0e-12 73.9 90 43.3
THA.LOC104807870 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 2.7e-11 72.0 90 45.6
BcaB06g28665 Brassica carinata HOM05D000725 ORTHO05D003141 4.5e-11 71.2 64 53.1
RcHm_v2.0_Chr6g0266081 Rosa chinensis HOM05D000725 ORTHO05D003141 1.3e-10 69.7 83 44.6
ATR0665G425 Amborella trichopoda HOM05D000725 ORTHO05D003141 1.7e-10 69.3 90 40.0
AL3G52560 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 5.0e-10 67.8 70 51.4
HPP92_022391 Vanilla planifolia HOM05D000725 ORTHO05D003141 1.6e-08 62.8 47 55.3
Rhsim04G0037100 Rhododendron simsii HOM05D000725 ORTHO05D003141 1.0e-07 60.1 43 60.5
SEGI_23418 Sequoiadendron giganteum HOM05D000725 ORTHO05D003141 3.0e-07 58.5 79 41.8
Mapoly0043s0033 Marchantia polymorpha HOM05D000725 ORTHO05D003141 4.4e-06 54.7 64 46.9
CDE04G0926 Ceratophyllum demersum HOM05D000725 ORTHO05D004053 7.5e-06 53.9 59 45.8
ECA240G2411 Erigeron canadensis HOM05D000725 ORTHO05D003141 7.5e-06 53.9 39 59.0
Pp3c1_36240 Physcomitrium patens HOM05D000725 ORTHO05D003141 7.5e-06 53.9 54 50.0
Aqoxy7G00421 Aquilegia oxysepala HOM05D000725 ORTHO05D004053 9.8e-06 53.5 59 44.1


User provided reference genes

Program Settings