Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0380651 Rosa chinensis HOM05D002263 ORTHO05D003537 5.0e-151 537.7 269 100.0
FAN25G0983 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-105 386.3 258 78.3
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 2.6e-59 233.0 305 46.6
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 3.4e-59 232.6 301 45.8
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 4.5e-59 232.3 305 46.6
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 1.4e-57 227.3 305 44.9
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.7e-56 222.2 305 43.9
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.7e-56 222.2 305 43.9
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.7e-56 222.2 305 43.9
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 7.9e-56 221.5 305 43.6
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.3e-55 219.9 305 43.6
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 7.4e-54 214.9 299 43.5
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.8e-53 213.0 299 43.1
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 4.1e-52 209.1 274 46.4
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.2e-51 207.6 305 43.0
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 5.9e-51 205.3 277 44.0
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 1.3e-50 204.1 305 41.3
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 3.8e-50 202.6 299 41.5
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 6.5e-50 201.8 193 56.5
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.5e-49 200.7 307 40.4
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.5e-49 200.7 307 40.4
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 1.5e-49 200.7 312 40.4
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.2e-48 197.6 303 40.9
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.6e-48 197.2 309 40.1
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 8.0e-48 194.9 309 39.8
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 1.0e-47 194.5 309 40.5
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 2.3e-47 193.4 310 39.4
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 4.0e-47 192.6 299 39.8
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 4.0e-47 192.6 300 40.3
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 4.0e-47 192.6 300 40.3
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 5.2e-47 192.2 301 40.9
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 6.7e-47 191.8 299 39.8
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 6.7e-47 191.8 295 39.0
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 1.2e-46 191.0 309 41.1
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 2.0e-46 190.3 299 40.8
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 2.6e-46 189.9 310 39.7
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 3.3e-46 189.5 300 39.3
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 4.4e-46 189.1 311 37.0
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 9.7e-46 188.0 306 36.6
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 4.8e-45 185.7 294 37.1
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 6.3e-45 185.3 301 39.5
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 8.2e-45 184.9 307 36.8
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 8.2e-45 184.9 308 38.6
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.1e-44 184.5 300 38.7
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 1.1e-44 184.5 307 36.8
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 1.8e-44 183.7 300 39.7
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 3.1e-44 183.0 298 39.3
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 4.1e-44 182.6 304 38.2
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.1e-44 182.6 303 38.9
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 5.3e-44 182.2 290 39.0
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 5.3e-44 182.2 308 39.6
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.0e-43 180.3 308 36.4
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 2.0e-43 180.3 311 38.9
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 2.0e-43 180.3 313 38.7
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 3.5e-43 179.5 274 39.4
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 7.7e-43 178.3 305 37.0
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 1.0e-42 177.9 309 37.5
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 1.3e-42 177.6 295 39.0
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.3e-42 177.6 304 38.2
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 1.3e-42 177.6 297 38.7
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.7e-42 177.2 294 38.1
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.7e-42 177.2 299 39.8
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 3.8e-42 176.0 294 37.4
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 5.0e-42 175.6 306 37.6
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 1.1e-41 174.5 309 36.9
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 1.1e-41 174.5 310 36.5
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 1.9e-41 173.7 298 39.6
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.9e-41 173.7 305 37.4
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 5.5e-41 172.2 279 37.6
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 9.4e-41 171.4 298 38.6
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 1.6e-40 170.6 304 34.2
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 1.6e-40 170.6 329 35.0
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 4.7e-40 169.1 301 36.5
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 4.7e-40 169.1 307 35.8
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 6.1e-40 168.7 304 35.2
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 6.1e-40 168.7 308 34.7
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 6.1e-40 168.7 308 34.7
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 6.1e-40 168.7 308 34.7
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 6.1e-40 168.7 337 35.6
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.0e-39 167.9 308 36.0
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 1.4e-39 167.5 294 39.1
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 1.4e-39 167.5 309 36.9
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 1.8e-39 167.2 300 37.0
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 2.3e-39 166.8 302 35.4
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 2.3e-39 166.8 303 36.3
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 3.0e-39 166.4 314 35.0
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 4.0e-39 166.0 302 36.4
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 5.2e-39 165.6 308 35.7
FvH4_3g01730 Fragaria vesca HOM05D002263 ORTHO05D003537 8.8e-39 164.9 97 82.5
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 8.8e-39 164.9 305 34.8
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 5.7e-38 162.2 300 34.0
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 5.7e-38 162.2 310 36.1
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 9.8e-38 161.4 191 47.1
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 1.3e-37 161.0 303 33.7
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.3e-37 161.0 297 35.0
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 1.7e-37 160.6 317 35.0
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.7e-37 159.5 297 34.7
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 6.3e-37 158.7 300 35.0
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.4e-36 157.5 311 33.1
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 1.8e-36 157.1 298 35.2
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 1.8e-36 157.1 324 34.6
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 4.1e-36 156.0 322 33.9
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 4.1e-36 156.0 329 33.4
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 9.1e-36 154.8 311 32.5
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 1.2e-35 154.5 267 37.5
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 2.7e-35 153.3 298 34.6
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 2.7e-35 153.3 192 44.3
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 4.5e-35 152.5 310 33.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 5.9e-35 152.1 316 36.1
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 1.3e-34 151.0 309 34.3
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 1.7e-34 150.6 311 31.8
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 5.0e-34 149.1 283 35.7
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 5.0e-34 149.1 303 33.7
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 5.0e-34 149.1 188 45.2
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 5.0e-34 149.1 196 42.9
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 8.6e-34 148.3 289 36.0
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 8.6e-34 148.3 188 44.7
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 1.5e-33 147.5 192 43.2
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 1.5e-33 147.5 304 32.6
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 4.2e-33 146.0 188 42.0
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.5e-33 145.6 329 31.9
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.2e-32 144.4 318 33.6
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.2e-32 144.4 312 32.4
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 2.8e-32 143.3 220 38.2
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 3.6e-32 142.9 318 34.6
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 8.0e-32 141.7 304 29.9
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 2.3e-31 140.2 161 48.4
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 8.8e-31 138.3 306 33.3
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 8.8e-31 138.3 311 30.2
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 7.5e-30 135.2 305 30.8
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 7.5e-30 135.2 305 30.8
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.1e-28 131.3 300 32.0
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 3.5e-27 126.3 194 38.1
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 1.0e-26 124.8 306 31.7
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 1.3e-26 124.4 301 30.9
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 3.8e-26 122.9 299 31.8
Nn7g36257 Nelumbo nucifera HOM05D002263 ORTHO05D003537 8.6e-26 121.7 252 35.3
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 7.3e-25 118.6 297 31.3
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 9.5e-25 118.2 306 26.8
Nn1g07152 Nelumbo nucifera HOM05D002263 ORTHO05D003537 9.5e-25 118.2 140 52.1
Hma1.2p1_1755F.1_g300980 Hydrangea macrophylla HOM05D002263 ORTHO05D013693 3.4e-22 109.8 179 40.2
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 1.7e-21 107.5 261 32.2
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 1.7e-21 107.5 261 32.2
BcaB01g05526 Brassica carinata HOM05D002263 ORTHO05D003537 2.2e-21 107.1 261 32.2
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 1.1e-20 104.8 136 43.4
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 4.1e-20 102.8 181 34.3
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 3.5e-19 99.8 253 30.4
AL3G19320 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 3.0e-18 96.7 93 53.8
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 6.6e-18 95.5 267 29.6
SEGI_34540 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 4.3e-17 92.8 213 31.5
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 9.5e-17 91.7 266 29.7
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 6.2e-16 89.0 154 37.7
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.2e-16 89.0 295 26.4
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.8e-15 87.4 271 28.0
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 2.3e-15 87.0 143 40.6
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 3.1e-15 86.7 150 35.3
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 3.1e-15 86.7 292 26.4
QL04p008053 Quercus lobata HOM05D002263 ORTHO05D003537 8.9e-15 85.1 75 54.7
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 1.2e-14 84.7 253 29.2
C03p05160 Brassica napus HOM05D002263 ORTHO05D003537 7.5e-14 82.0 286 28.3
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.3e-13 81.3 112 41.1
Lj4A284T34 Lonicera japonica HOM05D002263 ORTHO05D013693 2.9e-13 80.1 185 32.4
Medtr0756s0010 Medicago truncatula HOM05D002263 ORTHO05D003537 1.1e-12 78.2 186 29.0
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 3.0e-10 70.1 77 42.9
MD09G1237200 Malus domestica HOM05D002263 ORTHO05D013693 1.9e-09 67.4 74 45.9
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 7.3e-09 65.5 59 55.9
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.6e-08 64.3 78 46.2
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 3.1e-07 60.1 168 29.2
A03p58620 Brassica napus HOM05D002263 ORTHO05D013693 4.0e-07 59.7 101 31.7
BraA03t14922Z Brassica rapa HOM05D002263 ORTHO05D013693 4.0e-07 59.7 101 31.7
TPR.G32072 Trifolium pratense HOM05D002263 ORTHO05D003537 8.9e-07 58.5 133 29.3
QL10p065355 Quercus lobata HOM05D002263 ORTHO05D029945 3.4e-06 56.6 51 51.0
A03p58560 Brassica napus HOM05D002263 ORTHO05D013693 7.5e-06 55.5 101 30.7
BraA03t14916Z Brassica rapa HOM05D002263 ORTHO05D013693 9.9e-06 55.1 101 30.7
SHI19944 Sapria himalayana HOM05D002263 ORTHO05D003537 9.9e-06 55.1 72 43.1


User provided reference genes

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