Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379331 Rosa chinensis HOM05D002159 ORTHO05D005625 3.6e-21 104.0 52 100.0
RcHm_v2.0_Chr1g0379161 Rosa chinensis HOM05D002159 ORTHO05D005625 1.9e-14 81.6 66 68.2
RcHm_v2.0_Chr1g0377681 Rosa chinensis HOM05D002159 ORTHO05D005625 5.7e-11 70.1 67 58.2
MD01G1203600 Malus domestica HOM05D002159 ORTHO05D005625 9.8e-11 69.3 67 56.7
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 1.7e-10 68.6 67 58.2
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.7e-10 68.6 67 58.2
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.7e-10 68.6 67 58.2
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.7e-10 68.6 67 58.2
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 2.2e-10 68.2 67 55.2
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 3.7e-10 67.4 67 55.2
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 3.7e-10 67.4 67 55.2
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 4.8e-10 67.0 67 55.2
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.3e-10 66.6 66 57.6
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.3e-10 66.6 66 57.6
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Actinidia34126 Actinidia chinensis HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 55.2
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 55.2
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 55.2
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Glyma.11G170601 Glycine max HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Glyma.11G171002 Glycine max HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 55.2
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
VMungo0464G2116 Vigna mungo HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 8.3e-10 66.2 67 53.7
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.1e-09 65.9 67 56.7
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 1.8e-09 65.1 67 52.2
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 1.8e-09 65.1 67 53.7
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 2.4e-09 64.7 67 53.7
Cc02_g02790 Coffea canephora HOM05D002159 ORTHO05D005625 2.4e-09 64.7 67 52.2
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 2.4e-09 64.7 67 53.7
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 3.1e-09 64.3 67 52.2
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 4.1e-09 63.9 67 52.2
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 4.1e-09 63.9 67 52.2
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 4.1e-09 63.9 67 52.2
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 4.1e-09 63.9 67 52.2
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 4.1e-09 63.9 67 52.2
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 4.1e-09 63.9 67 52.2
Oeu028430.1 Olea europaea HOM05D002159 ORTHO05D005625 4.1e-09 63.9 67 52.2
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 4.1e-09 63.9 67 52.2
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 5.4e-09 63.5 47 68.1
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 5.4e-09 63.5 67 52.2
Psat0s2150g0120 Pisum sativum HOM05D002159 ORTHO05D005625 5.4e-09 63.5 67 52.2
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 5.4e-09 63.5 67 52.2
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 7.0e-09 63.2 67 52.2
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 7.0e-09 63.2 63 55.6
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 7.0e-09 63.2 67 52.2
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 7.0e-09 63.2 67 52.2
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 7.0e-09 63.2 67 50.7
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 9.1e-09 62.8 64 53.1
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 9.1e-09 62.8 67 52.2
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 9.1e-09 62.8 67 52.2
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 9.1e-09 62.8 67 52.2
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 1.2e-08 62.4 67 52.2
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 1.2e-08 62.4 67 52.2
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 1.2e-08 62.4 67 52.2
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 1.2e-08 62.4 67 52.2
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 1.2e-08 62.4 67 52.2
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 1.2e-08 62.4 67 50.7
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 1.2e-08 62.4 67 50.7
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 1.2e-08 62.4 67 50.7
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 1.6e-08 62.0 67 52.2
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 1.6e-08 62.0 67 50.7
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 2.0e-08 61.6 67 50.7
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 2.0e-08 61.6 67 49.3
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 2.0e-08 61.6 67 50.7
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 2.7e-08 61.2 67 50.7
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 2.7e-08 61.2 67 50.7
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 2.7e-08 61.2 67 50.7
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 2.7e-08 61.2 67 50.7
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 2.7e-08 61.2 67 50.7
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 2.7e-08 61.2 67 50.7
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 2.7e-08 61.2 67 50.7
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 2.7e-08 61.2 67 50.7
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 3.5e-08 60.8 67 49.3
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 3.5e-08 60.8 67 50.7
BcaNung05470 Brassica carinata HOM05D002159 ORTHO05D005625 4.5e-08 60.5 67 49.3
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 7.7e-08 59.7 66 50.0
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.3e-07 58.9 67 49.3
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 1.3e-07 58.9 67 49.3
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 1.3e-07 58.9 67 49.3
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 1.7e-07 58.5 67 47.8
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 1.7e-07 58.5 67 50.7
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 1.7e-07 58.5 67 49.3
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 2.2e-07 58.2 61 52.5
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 2.9e-07 57.8 67 47.8
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 6.5e-07 56.6 67 46.3
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 1.1e-06 55.8 67 46.3
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 1.1e-06 55.8 67 46.3
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 3.2e-06 54.3 31 77.4
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 3.2e-06 54.3 67 46.3
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 4.2e-06 53.9 64 50.0
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 7.2e-06 53.1 67 40.3
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 7.2e-06 53.1 67 47.8


User provided reference genes

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