Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 0.0e+00 2714.1 1377 100.0
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 0.0e+00 2101.6 1384 80.8
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 2070.0 1384 79.8
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 2031.1 1379 79.0
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 2028.4 1384 78.9
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1996.9 1428 75.9
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1965.3 1372 77.0
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 0.0e+00 1692.6 1395 66.5
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 0.0e+00 1553.1 1428 61.7
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1476.1 994 80.3
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 1.3e-306 1057.0 1691 42.1
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 4.0e-305 1052.0 1412 47.6
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 2.5e-291 1006.1 1704 40.9
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.7e-290 1003.4 1402 45.8
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 6.1e-285 984.9 1456 44.4
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 8.2e-282 974.5 1408 45.2
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 1.4e-273 947.2 1089 53.6
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 1.2e-267 927.5 1405 44.1
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 2.6e-267 926.4 1684 39.3
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 3.3e-254 882.9 1628 38.7
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 4.0e-252 875.9 1701 38.2
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 6.4e-242 842.0 1662 38.4
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 7.8e-240 835.1 1403 40.7
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.4e-236 824.3 1675 36.7
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 4.0e-236 822.8 1481 39.7
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 5.0e-231 805.8 1715 36.9
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.3e-230 802.0 492 83.7
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 8.1e-229 798.5 1402 39.6
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.1e-228 796.6 1752 36.0
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 1.2e-224 784.6 1530 39.0
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 2.7e-224 783.5 1754 36.0
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 8.4e-218 761.9 721 58.4
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 7.1e-217 758.8 1635 35.9
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 1.7e-207 727.6 1638 35.2
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 6.6e-207 725.7 1634 34.9
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 4.0e-204 716.5 1576 36.4
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 4.5e-203 713.0 723 56.7
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 9.9e-203 711.8 1648 35.3
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 4.9e-202 709.5 1562 36.3
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 2.4e-201 707.2 1656 35.3
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 2.7e-200 703.7 1683 34.8
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 6.7e-199 699.1 1641 34.8
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 2.1e-197 694.1 1666 33.7
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 4.6e-192 676.4 1583 35.9
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 8.2e-189 665.6 1422 36.4
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.6e-187 660.6 1367 36.6
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 2.9e-186 657.1 1670 33.9
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 1.4e-185 654.8 1417 34.7
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 4.2e-185 653.3 1693 31.8
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 2.7e-184 650.6 1208 38.9
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 7.9e-184 649.0 1728 32.1
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.3e-183 648.3 721 52.0
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 3.0e-183 647.1 1417 34.7
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 5.1e-183 646.4 1209 38.7
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 8.7e-183 645.6 1654 34.2
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 2.8e-181 640.6 719 52.0
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 4.8e-181 639.8 1652 33.1
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 1.1e-180 638.6 1648 32.6
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 1.4e-180 638.3 1676 32.1
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.8e-180 637.9 1664 32.3
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 4.1e-180 636.7 1292 37.3
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 4.5e-179 633.3 1648 33.0
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 2.2e-178 630.9 1568 33.5
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 1.4e-177 628.2 1638 32.6
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.0e-175 622.1 1641 32.2
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 1.7e-173 614.8 1657 32.2
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 3.7e-173 613.6 1314 35.8
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 3.4e-171 607.1 1426 35.0
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 5.9e-171 606.3 1642 31.7
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 7.7e-171 605.9 1454 35.6
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 2.2e-170 604.4 1457 34.2
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.4e-169 601.7 1457 34.0
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 1.2e-168 598.6 1658 32.1
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 1.2e-168 598.6 723 50.9
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 1.8e-167 594.7 1655 31.7
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 8.8e-167 592.4 1650 32.1
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 2.6e-166 590.9 1642 31.9
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 5.7e-166 589.7 1639 31.9
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 4.8e-165 586.6 1644 31.8
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 8.5e-162 575.9 1653 31.3
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 1.1e-161 575.5 1646 31.8
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 3.2e-161 573.9 1717 31.3
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.2e-160 572.0 1432 33.3
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 3.3e-158 563.9 1710 30.6
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 2.4e-156 557.8 1463 32.8
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 5.3e-156 556.6 1710 30.5
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 2.6e-155 554.3 1456 31.7
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 3.0e-151 540.8 1661 31.1
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.0e-150 538.1 1408 33.4
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 1.1e-148 532.3 1223 34.9
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 2.0e-139 501.5 650 47.1
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 2.7e-139 501.1 720 44.0
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 6.6e-138 496.5 643 47.1
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 2.5e-137 494.6 1668 30.2
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 9.8e-126 456.1 1218 33.6
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 6.0e-99 367.1 788 36.0
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 4.4e-94 350.9 526 42.6
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 2.5e-89 335.1 1109 29.9
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 5.1e-82 310.8 1764 25.2
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 1.0e-74 286.6 295 59.3
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 2.4e-71 275.4 1397 25.0
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 2.2e-69 268.9 316 47.8
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 5.7e-65 254.2 513 37.8
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 1.8e-58 232.6 1078 26.5
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 2.3e-58 232.3 842 27.6
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 3.9e-58 231.5 468 35.5
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 1.1e-55 223.4 206 59.2
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.3e-53 216.5 576 31.4
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.1e-44 186.8 147 67.3
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 3.9e-42 178.3 233 42.1
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.4e-41 174.9 191 59.7
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 6.5e-37 161.0 373 31.4
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 5.2e-34 151.4 585 26.2
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 9.8e-33 147.1 127 69.3
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 8.3e-32 144.1 228 35.1
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.6e-30 139.8 213 42.7
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 2.5e-28 132.5 271 34.3
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.5e-28 131.3 115 68.7
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 9.8e-25 120.6 109 66.1
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 9.5e-20 104.0 210 40.0
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 4.7e-19 101.7 166 47.0
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 2.9e-16 92.4 218 36.7
FvH4_6g30770 Fragaria vesca HOM05D005579 ORTHO05D045462 8.0e-11 74.3 62 64.5
Ah.07g206970 Amaranthus hybridus HOM05D005579 ORTHO05D006775 1.0e-10 73.9 155 35.5
FAN16G1139 Fragaria x ananassa HOM05D005579 ORTHO05D045462 6.8e-10 71.2 59 64.4
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 6.8e-10 71.2 135 32.6
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 1.2e-09 70.5 137 36.5
MBI17_g46440_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D048546 3.4e-09 68.9 134 37.3
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 8.3e-08 64.3 145 30.3
Medtr6g045353 Medicago truncatula HOM05D005579 ORTHO05D006775 1.2e-06 60.5 86 40.7
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 3.5e-06 58.9 89 42.7
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 3.5e-06 58.9 269 24.5


User provided reference genes

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