Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1618.6 809 100.0
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1494.9 811 92.2
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1467.2 809 90.6
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1464.5 809 90.6
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1448.0 809 90.0
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1396.7 811 87.4
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1286.2 808 80.1
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1266.5 808 79.3
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1178.7 812 73.0
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1171.4 806 72.3
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1159.8 812 72.4
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1158.7 806 72.8
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1152.1 621 93.6
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1151.7 620 93.5
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1151.7 813 70.8
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1146.3 808 70.9
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1144.8 811 71.9
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1144.4 811 71.1
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1142.9 812 71.7
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1142.5 813 70.5
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1138.3 809 71.1
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1137.5 813 70.4
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1136.3 814 70.5
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1126.3 820 69.0
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1119.4 620 91.5
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1117.1 809 69.0
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1100.5 813 68.3
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1096.3 811 67.4
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1089.7 833 65.9
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 0.0e+00 1084.7 871 66.0
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 5.5e-312 1074.7 810 66.5
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 6.6e-311 1070.5 818 67.0
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 4.2e-310 1067.8 819 67.0
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 5.5e-310 1067.4 815 66.4
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 2.3e-308 1062.0 813 65.9
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 5.1e-308 1060.8 813 66.3
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 6.3e-306 1053.9 812 66.9
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 3.1e-305 1051.6 821 66.7
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 2.9e-303 1045.0 786 67.9
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.9e-302 1042.3 792 67.7
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 2.5e-302 1042.0 813 65.1
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 5.5e-302 1040.8 812 66.3
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 7.2e-302 1040.4 800 66.9
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 9.3e-302 1040.0 812 66.3
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 6.1e-301 1037.3 798 66.8
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 3.0e-300 1035.0 821 63.8
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 8.7e-300 1033.5 821 63.3
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 4.3e-299 1031.2 808 65.7
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 7.4e-299 1030.4 800 66.1
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 9.7e-299 1030.0 834 63.4
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 8.2e-298 1026.9 817 64.4
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 4.1e-297 1024.6 732 70.8
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.6e-296 1021.9 795 66.0
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 1.0e-295 1020.0 793 66.1
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.1e-294 1016.5 786 64.6
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.4e-294 1016.1 816 65.0
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 1.6e-293 1012.7 809 64.8
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 2.1e-293 1012.3 829 61.6
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 4.6e-293 1011.1 811 64.1
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.5e-291 1006.1 796 65.7
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.0e-291 1005.7 814 63.6
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 2.0e-291 1005.7 811 64.4
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.3e-290 1003.0 816 63.5
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 4.8e-290 1001.1 810 62.6
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 6.3e-290 1000.7 820 64.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.8e-289 999.2 811 62.3
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 9.1e-289 996.9 810 62.5
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 9.1e-289 996.9 827 61.8
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 4.5e-288 994.6 793 63.3
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.3e-287 993.0 813 62.6
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 6.5e-287 990.7 834 61.0
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.4e-286 989.6 811 61.7
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 3.2e-286 988.4 813 62.1
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 3.2e-286 988.4 812 62.2
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 4.7e-285 984.6 811 62.0
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.9e-284 981.5 786 62.8
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 5.2e-284 981.1 811 61.7
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 6.7e-284 980.7 839 60.5
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.1e-281 973.4 822 61.9
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 3.1e-281 971.8 817 61.2
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.6e-280 968.8 740 67.6
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 9.7e-275 950.3 821 60.2
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 9.1e-273 943.7 821 61.5
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 4.2e-270 934.9 811 59.9
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 1.6e-264 916.4 809 58.8
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.3e-263 912.5 858 57.9
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 1.8e-257 892.9 638 71.2
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 2.7e-256 889.0 877 54.3
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.5e-256 888.6 736 62.0
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 2.5e-254 882.5 821 56.8
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 6.2e-237 824.7 764 57.7
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 6.0e-232 808.1 593 69.6
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 3.3e-230 802.4 618 67.8
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 2.8e-221 772.7 625 64.6
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.1e-212 744.2 720 53.6
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 2.7e-200 703.0 796 49.5
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 4.0e-196 689.1 775 49.7
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 8.2e-189 664.8 816 45.1
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.6e-184 650.6 722 48.3
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 1.2e-179 634.4 549 62.5
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.6e-163 580.1 483 64.6
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 2.5e-161 573.5 405 70.4
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 4.4e-158 562.8 551 54.1
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 3.1e-156 556.6 475 59.6
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 4.5e-147 526.2 396 69.7
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 9.8e-142 508.4 330 72.1
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.9e-130 469.9 395 63.3
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.4e-126 456.8 341 64.8
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.8e-126 456.1 338 64.8
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.1e-124 451.8 775 37.0
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 2.5e-121 440.7 778 36.1
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.5e-113 414.8 782 35.3
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 9.9e-102 375.6 483 47.6
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.1e-98 363.2 458 43.4
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 1.3e-93 348.6 279 65.6
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-92 345.1 189 87.8
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 2.6e-86 324.3 238 64.7
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.9e-81 308.1 295 55.6
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.4e-78 297.4 381 48.6
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 4.5e-78 297.0 860 29.5
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.7e-73 280.0 183 71.6
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.7e-66 256.5 323 44.9
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.3e-65 254.2 310 45.5
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 8.8e-58 229.6 177 68.9
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.5e-57 228.8 230 50.4
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.3e-55 220.3 144 71.5
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.6e-46 191.4 159 58.5
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 4.5e-46 190.7 233 51.9
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.7e-46 189.9 168 60.7
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.2e-44 183.3 168 58.9
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.2e-37 161.8 221 41.6
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.5e-36 159.1 150 54.0
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 8.0e-35 153.3 219 42.9
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 3.7e-32 144.4 144 54.9
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-17 95.1 105 45.7
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 1.3e-16 92.8 822 22.5
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.1e-12 79.7 103 43.7
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.9e-12 79.0 402 23.4
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 8.9e-10 70.1 95 44.2
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 2.2e-08 65.5 36 86.1
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-07 62.8 43 69.8


User provided reference genes

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