Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0342131 Rosa chinensis HOM05D000809 ORTHO05D007733 2.8e-70 268.5 133 100.0
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 5.7e-23 111.3 109 57.8
RcHm_v2.0_Chr2g0091011 Rosa chinensis HOM05D000809 ORTHO05D007733 9.8e-23 110.5 93 64.5
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 1.7e-22 109.8 109 56.9
FvH4_1g05310 Fragaria vesca HOM05D000809 ORTHO05D007733 4.8e-22 108.2 82 68.3
CANSAT56G3015 Cannabis sativa HOM05D000809 ORTHO05D007733 3.8e-19 98.6 79 67.1
FAN19G0453 Fragaria x ananassa HOM05D000809 ORTHO05D007733 5.0e-19 98.2 103 55.3
Cfa003287 Carpinus fangiana HOM05D000809 ORTHO05D007733 4.2e-18 95.1 66 69.7
CiPaw.03G234800 Carya illinoinensis HOM05D000809 ORTHO05D007733 7.2e-18 94.4 68 70.6
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 9.5e-18 94.0 105 49.5
Haze_25686 Corylus avellana HOM05D000809 ORTHO05D007733 1.2e-17 93.6 66 68.2
QL02p085975 Quercus lobata HOM05D000809 ORTHO05D007733 2.1e-17 92.8 79 62.0
Dinv36606 Davidia involucrata HOM05D000809 ORTHO05D007733 4.7e-17 91.7 97 53.6
MD15G1189200 Malus domestica HOM05D000809 ORTHO05D007733 2.3e-16 89.4 71 67.6
Oeu000378.3 Olea europaea HOM05D000809 ORTHO05D007733 2.3e-16 89.4 76 63.2
Thecc.09G114200 Theobroma cacao HOM05D000809 ORTHO05D007733 4.0e-16 88.6 79 62.0
CSS0005642 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 5.2e-16 88.2 105 49.5
Oeu013437.1 Olea europaea HOM05D000396 ORTHO05D007733 5.2e-16 88.2 76 61.8
Actinidia07419 Actinidia chinensis HOM05D000809 ORTHO05D007733 1.5e-15 86.7 59 74.6
CsaV3_1G030840 Cucumis sativus L. HOM05D000809 ORTHO05D007733 2.0e-15 86.3 80 58.8
MD02G1056300 Malus domestica HOM05D000809 ORTHO05D007733 2.0e-15 86.3 71 64.8
Duzib168G1885 Durio zibethinus HOM05D000809 ORTHO05D007733 3.4e-15 85.5 79 57.0
Cc06_g09380 Coffea canephora HOM05D000809 ORTHO05D007733 4.4e-15 85.1 80 57.5
CSS0004763 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 5.7e-15 84.7 92 52.2
MELO3C025316.2 Cucumis melo HOM05D000809 ORTHO05D007733 7.5e-15 84.3 80 57.5
Eucgr.C04131 Eucalyptus grandis HOM05D000809 ORTHO05D007733 9.8e-15 84.0 77 59.7
RcHm_v2.0_Chr5g0051771 Rosa chinensis HOM05D000809 ORTHO05D344884 9.8e-15 84.0 46 82.6
Aqoxy7G01822 Aquilegia oxysepala HOM05D000809 ORTHO05D007733 2.2e-14 82.8 76 59.2
Gohir.A05G021400 Gossypium hirsutum HOM05D000809 ORTHO05D007733 2.2e-14 82.8 66 62.1
Gohir.D05G022900 Gossypium hirsutum HOM05D000809 ORTHO05D007733 2.2e-14 82.8 66 62.1
Gorai.009G023100 Gossypium raimondii HOM05D000809 ORTHO05D007733 2.2e-14 82.8 66 62.1
ClCG06G010380 Citrullus lanatus HOM05D000809 ORTHO05D007733 2.8e-14 82.4 80 56.2
Eucgr.C03953 Eucalyptus grandis HOM05D000809 ORTHO05D007733 2.8e-14 82.4 77 58.4
EL10Ac8g18530 Beta vulgaris HOM05D000809 ORTHO05D007733 3.7e-14 82.0 59 69.5
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 6.3e-14 81.3 97 46.4
GSVIVG01015424001 Vitis vinifera HOM05D000809 ORTHO05D007733 6.3e-14 81.3 72 63.9
arahy.Tifrunner.gnm1.ann1.JACH1V Arachis hypogaea HOM05D000809 ORTHO05D007733 8.3e-14 80.9 95 47.4
Ca_25514_v3 Cicer arietinum L. HOM05D000809 ORTHO05D007733 1.4e-13 80.1 96 50.0
Medtr6g086600 Medicago truncatula HOM05D000809 ORTHO05D007733 1.4e-13 80.1 78 56.4
Atru.chr7.1304 Acer truncatum HOM05D000809 ORTHO05D007733 2.4e-13 79.3 78 59.0
Lj7C645G9 Lonicera japonica HOM05D000809 ORTHO05D007733 2.4e-13 79.3 111 45.0
PGR102G2432 Punica granatum HOM05D000809 ORTHO05D007733 2.4e-13 79.3 71 62.0
Lj2g0016022 Lotus japonicus HOM05D000809 ORTHO05D007733 4.1e-13 78.6 99 47.5
Nitab4.5_0001672g0130 Nicotiana tabacum HOM05D000809 ORTHO05D007733 4.1e-13 78.6 71 66.2
Migut.K00460 Erythranthe guttata HOM05D000809 ORTHO05D007733 5.4e-13 78.2 72 58.3
AUR62011020 Chenopodium quinoa HOM05D000809 ORTHO05D007733 1.6e-12 76.6 59 66.1
AUR62033393 Chenopodium quinoa HOM05D000809 ORTHO05D007733 1.6e-12 76.6 59 66.1
Ciclev10007988m.g Citrus clementina HOM05D000809 ORTHO05D007733 1.6e-12 76.6 78 56.4
Sc08g0007210 Simmondsia chinensis HOM05D000809 ORTHO05D007733 1.6e-12 76.6 72 58.3
PGSC0003DMG400000383 Solanum tuberosum HOM05D000809 ORTHO05D007733 2.0e-12 76.3 51 78.4
Nitab4.5_0003537g0040 Nicotiana tabacum HOM05D000809 ORTHO05D007733 2.7e-12 75.9 90 51.1
PSO063G5751 Papaver somniferum HOM05D000809 ORTHO05D007733 2.7e-12 75.9 83 48.2
PSO782G1122 Papaver somniferum HOM05D000809 ORTHO05D007733 2.7e-12 75.9 83 48.2
THA.LOC104808749 Tarenaya hassleriana HOM05D000809 ORTHO05D007733 2.7e-12 75.9 116 42.2
Glyma.09G187800 Glycine max HOM05D000809 ORTHO05D007733 3.5e-12 75.5 98 46.9
TPR.G31450 Trifolium pratense HOM05D000809 ORTHO05D007733 3.5e-12 75.5 78 55.1
Glyma.07G089200 Glycine max HOM05D000809 ORTHO05D007733 4.5e-12 75.1 91 48.4
Sopen12g002980 Solanum pennellii HOM05D000809 ORTHO05D007733 4.5e-12 75.1 64 68.8
Sed0012141 Sechium edule HOM05D000809 ORTHO05D007733 7.8e-12 74.3 80 51.2
Lalb_Chr24g0397641 Lupinus albus HOM05D000809 ORTHO05D007733 1.0e-11 73.9 95 45.3
Nn2g11810 Nelumbo nucifera HOM05D000809 ORTHO05D007733 1.3e-11 73.6 92 47.8
Lsat_1_v5_gn_8_93401 Lactuca sativa HOM05D000809 ORTHO05D007733 1.7e-11 73.2 92 46.7
Phvul.004G160900 Phaseolus vulgaris HOM05D000809 ORTHO05D007733 2.3e-11 72.8 95 48.4
CAN.G1710.9 Capsicum annuum HOM05D000809 ORTHO05D007733 2.9e-11 72.4 51 74.5
HanXRQChr05g0137991 Helianthus annuus HOM05D000809 ORTHO05D007733 2.9e-11 72.4 75 53.3
Nn8g39257 Nelumbo nucifera HOM05D000809 ORTHO05D007733 2.9e-11 72.4 66 62.1
Gohir.D05G022766 Gossypium hirsutum HOM05D000809 ORTHO05D007733 3.9e-11 72.0 46 76.1
Solyc12g007010.2 Solanum lycopersicum HOM05D000809 ORTHO05D007733 5.0e-11 71.6 51 74.5
Potri.018G076600 Populus trichocarpa HOM05D000809 ORTHO05D007733 1.9e-10 69.7 43 79.1
Prupe.7G227600 Prunus persica HOM05D000809 ORTHO05D007733 1.9e-10 69.7 52 73.1
VMungo0464G1974 Vigna mungo HOM05D000809 ORTHO05D007733 1.9e-10 69.7 82 50.0
TWI34G1334 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 2.5e-10 69.3 105 44.8
TAR626G0858 Trochodendron aralioides HOM05D000809 ORTHO05D007733 3.3e-10 68.9 133 36.1
Peaxi162Scf00546g00322 Petunia axillaris HOM05D000809 ORTHO05D007733 5.6e-10 68.2 54 70.4
Sabra18G0064600 Salix brachista HOM05D000809 ORTHO05D007733 5.6e-10 68.2 65 58.5
Manes.16G070800 Manihot esculenta HOM05D000809 ORTHO05D007733 7.3e-10 67.8 53 66.0
Hund09189 Selenicereus undatus HOM05D000809 ORTHO05D007733 7.3e-10 67.8 61 59.0
SGA_v2.0_scaffold109G31030 Striga asiatica HOM05D000809 ORTHO05D007733 9.5e-10 67.4 62 61.3
arahy.Tifrunner.gnm1.ann1.G2DL39 Arachis hypogaea HOM05D000809 ORTHO05D007733 1.2e-09 67.0 120 37.5
MSTRG.10680 Avicennia marina HOM05D000809 ORTHO05D007733 2.8e-09 65.9 72 54.2
CDE06G2677 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 2.8e-09 65.9 46 69.6
CARHR100520 Cardamine hirsuta HOM05D000809 ORTHO05D007733 3.6e-09 65.5 107 42.1
ECA238G4585 Erigeron canadensis HOM05D000809 ORTHO05D007733 3.6e-09 65.5 47 68.1
SalBow1G2443 Salvia bowleyana HOM05D000809 ORTHO05D007733 3.6e-09 65.5 59 59.3
ATR0037G048 Amborella trichopoda HOM05D000809 ORTHO05D007733 4.7e-09 65.1 63 58.7
Cpa.g.sc23.132 Carica papaya HOM05D000809 ORTHO05D007733 4.7e-09 65.1 122 34.4
TWI63G1087 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 6.1e-09 64.7 62 62.9
AL3G39860 Arabidopsis lyrata HOM05D000809 ORTHO05D007733 8.0e-09 64.3 115 42.6
Sp3g24440 Schrenkiella parvula HOM05D000809 ORTHO05D007733 8.0e-09 64.3 93 43.0
BcaC06g32603 Brassica carinata HOM05D000809 ORTHO05D007733 1.0e-08 63.9 66 59.1
SEGI_18085 Sequoiadendron giganteum HOM05D000809 ORTHO05D007733 1.8e-08 63.2 49 67.3
AT3G24430 Arabidopsis thaliana HOM05D000809 ORTHO05D007733 4.0e-08 62.0 60 60.0
Carub.0003s2473 Capsella rubella HOM05D000809 ORTHO05D007733 5.2e-08 61.6 73 53.4
vmacro20666 Vaccinium macrocarpon HOM05D000809 ORTHO05D007733 5.2e-08 61.6 43 69.8
unitig_899.g15426 Utricularia gibba HOM05D000809 ORTHO05D007733 1.2e-07 60.5 55 61.8
Thhalv10002483m.g Eutrema salsugineum HOM05D000809 ORTHO05D007733 1.5e-07 60.1 75 48.0
Aa31LG8G11120 Aethionema arabicum HOM05D000809 ORTHO05D007733 2.0e-07 59.7 52 63.5
A03p58410 Brassica napus HOM05D000809 ORTHO05D007733 2.6e-07 59.3 66 57.6
BraA03t14902Z Brassica rapa HOM05D000809 ORTHO05D007733 2.6e-07 59.3 66 57.6
HPP92_006444 Vanilla planifolia HOM05D000809 ORTHO05D007733 2.6e-07 59.3 34 82.4
Rhsim01G0091800 Rhododendron simsii HOM05D000809 ORTHO05D007733 3.4e-07 58.9 47 66.0
BolC7t46122H Brassica oleracea HOM05D000809 ORTHO05D007733 1.7e-06 56.6 64 56.2
AUR62029038 Chenopodium quinoa HOM05D000809 ORTHO05D001691 1.7e-06 56.6 52 57.7
C07p56430 Brassica napus HOM05D000809 ORTHO05D007733 3.7e-06 55.5 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.454 Anthoceros agrestis HOM05D000809 ORTHO05D007733 4.9e-06 55.1 56 53.6
DCAR_012086 Daucus carota HOM05D000809 ORTHO05D007733 6.4e-06 54.7 35 71.4
Mapoly0100s0060 Marchantia polymorpha HOM05D000809 ORTHO05D007733 8.3e-06 54.3 56 53.6


User provided reference genes

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