Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0332211 Rosa chinensis HOM05D001184 ORTHO05D017717 7.9e-61 236.9 116 100.0
FvH4_4g13560 Fragaria vesca HOM05D001184 ORTHO05D003397 1.3e-10 70.1 40 82.5
FAN07G0119 Fragaria x ananassa HOM05D001184 ORTHO05D003397 1.3e-10 70.1 40 82.5
FAN12G0346 Fragaria x ananassa HOM05D001184 ORTHO05D003397 1.3e-10 70.1 40 82.5
FAN17G0017 Fragaria x ananassa HOM05D001184 ORTHO05D003397 1.3e-10 70.1 40 82.5
FAN22G0763 Fragaria x ananassa HOM05D001184 ORTHO05D003397 1.3e-10 70.1 40 82.5
CANSAT78G2277 Cannabis sativa HOM05D001184 ORTHO05D003397 2.8e-10 68.9 41 80.5
RcHm_v2.0_Chr4g0414311 Rosa chinensis HOM05D001184 ORTHO05D003397 1.1e-09 67.0 40 80.0
TWI18G0923 Tripterygium wilfordii HOM05D001184 ORTHO05D003397 1.4e-09 66.6 41 75.6
Manes.15G055300 Manihot esculenta HOM05D001184 ORTHO05D003397 1.8e-09 66.2 41 75.6
Eucgr.H00043 Eucalyptus grandis HOM05D001184 ORTHO05D003397 2.4e-09 65.9 41 70.7
Potri.001G317500 Populus trichocarpa HOM05D001184 ORTHO05D003397 2.4e-09 65.9 41 75.6
Sabra16G0200900 Salix brachista HOM05D001184 ORTHO05D003397 2.4e-09 65.9 41 75.6
TAR362G0810 Trochodendron aralioides HOM05D001184 ORTHO05D003397 4.1e-09 65.1 40 70.0
TAR633G0494 Trochodendron aralioides HOM05D001184 ORTHO05D003397 4.1e-09 65.1 41 70.7
Lj3g0023242 Lotus japonicus HOM05D001184 ORTHO05D003397 5.4e-09 64.7 41 70.7
Rhsim02G0172200 Rhododendron simsii HOM05D001184 ORTHO05D003397 5.4e-09 64.7 41 70.7
vmacro11026 Vaccinium macrocarpon HOM05D001184 ORTHO05D003397 5.4e-09 64.7 41 70.7
GSVIVG01020924001 Vitis vinifera HOM05D001184 ORTHO05D003397 5.4e-09 64.7 41 73.2
Cpa.g.sc83.20 Carica papaya HOM05D001184 ORTHO05D003397 7.0e-09 64.3 41 73.2
PSO339G1617 Papaver somniferum HOM05D001184 ORTHO05D003397 7.0e-09 64.3 41 73.2
PSO384G1210 Papaver somniferum HOM05D001184 ORTHO05D003397 7.0e-09 64.3 41 73.2
arahy.Tifrunner.gnm1.ann1.28RW3P Arachis hypogaea HOM05D001184 ORTHO05D003397 9.1e-09 63.9 41 68.3
arahy.Tifrunner.gnm1.ann1.P6K76F Arachis hypogaea HOM05D001184 ORTHO05D003397 9.1e-09 63.9 41 68.3
COL.COLO4_20192 Corchorus olitorius HOM05D001184 ORTHO05D003397 9.1e-09 63.9 41 73.2
Nn3g19994 Nelumbo nucifera HOM05D001184 ORTHO05D003397 9.1e-09 63.9 41 73.2
QL10p065779 Quercus lobata HOM05D001184 ORTHO05D003397 9.1e-09 63.9 41 70.7
Sed0027305 Sechium edule HOM05D001184 ORTHO05D003397 9.1e-09 63.9 41 70.7
THA.LOC104808703 Tarenaya hassleriana HOM05D001184 ORTHO05D003397 9.1e-09 63.9 41 68.3
TWI12G1242 Tripterygium wilfordii HOM05D001184 ORTHO05D003397 9.1e-09 63.9 41 73.2
CSS0018170 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D003397 1.2e-08 63.5 41 70.7
CSS0036533 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D003397 1.2e-08 63.5 41 70.7
CiPaw.02G065500 Carya illinoinensis HOM05D001184 ORTHO05D003397 1.6e-08 63.2 41 68.3
CDE06G0050 Ceratophyllum demersum HOM05D001184 ORTHO05D003397 1.6e-08 63.2 41 68.3
DCAR_023870 Daucus carota HOM05D001184 ORTHO05D003397 1.6e-08 63.2 41 70.7
Duzib212G0797 Durio zibethinus HOM05D001184 ORTHO05D003397 1.6e-08 63.2 41 68.3
Gohir.A09G206100 Gossypium hirsutum HOM05D001184 ORTHO05D003397 1.6e-08 63.2 41 70.7
Gohir.D09G199700 Gossypium hirsutum HOM05D001184 ORTHO05D003397 1.6e-08 63.2 41 70.7
Gorai.006G223400 Gossypium raimondii HOM05D001184 ORTHO05D003397 1.6e-08 63.2 41 70.7
AL7G42740 Arabidopsis lyrata HOM05D001184 ORTHO05D003397 2.0e-08 62.8 40 70.0
ClCG06G008040 Citrullus lanatus HOM05D001184 ORTHO05D003397 2.0e-08 62.8 45 66.7
Potri.017G057700 Populus trichocarpa HOM05D001184 ORTHO05D003397 2.0e-08 62.8 41 73.2
Sabra17G0050800 Salix brachista HOM05D001184 ORTHO05D003397 2.0e-08 62.8 41 73.2
VMungo1309G2214 Vigna mungo HOM05D001184 ORTHO05D017717 2.0e-08 62.8 41 70.7
Carub.0007s2868 Capsella rubella HOM05D001184 ORTHO05D003397 2.7e-08 62.4 40 70.0
DCAR_026633 Daucus carota HOM05D001184 ORTHO05D003397 2.7e-08 62.4 41 70.7
Glyma.12G018400 Glycine max HOM05D001184 ORTHO05D003397 2.7e-08 62.4 41 68.3
Lalb_Chr19g0139901 Lupinus albus HOM05D001184 ORTHO05D003397 2.7e-08 62.4 41 63.4
Prupe.1G159500 Prunus persica HOM05D001184 ORTHO05D003397 2.7e-08 62.4 40 72.5
PGR142G4368 Punica granatum HOM05D001184 ORTHO05D003397 2.7e-08 62.4 41 63.4
Thecc.04G199200 Theobroma cacao HOM05D001184 ORTHO05D003397 2.7e-08 62.4 41 70.7
TPR.G34293 Trifolium pratense HOM05D001184 ORTHO05D003397 2.7e-08 62.4 41 70.7
CDE08G1095 Ceratophyllum demersum HOM05D001184 ORTHO05D003397 3.5e-08 62.0 41 68.3
Ciclev10004343m.g Citrus clementina HOM05D001184 ORTHO05D003397 3.5e-08 62.0 41 65.9
Mapoly0045s0011 Marchantia polymorpha HOM05D001184 ORTHO05D003397 3.5e-08 62.0 45 57.8
Medtr4g077700 Medicago truncatula HOM05D001184 ORTHO05D003397 3.5e-08 62.0 41 68.3
Ah.13g078060 Amaranthus hybridus HOM05D001184 ORTHO05D003397 4.5e-08 61.6 41 68.3
AT4G13780 Arabidopsis thaliana HOM05D001184 ORTHO05D003397 4.5e-08 61.6 40 67.5
Peaxi162Scf00423g00134 Petunia axillaris HOM05D001184 ORTHO05D003397 4.5e-08 61.6 41 65.9
Psat4g022000 Pisum sativum HOM05D001184 ORTHO05D003397 4.5e-08 61.6 41 68.3
QL10p064653 Quercus lobata HOM05D001184 ORTHO05D003397 4.5e-08 61.6 41 68.3
SalBow8G1842 Salvia bowleyana HOM05D001184 ORTHO05D003397 4.5e-08 61.6 41 65.9
SalBow8G3376 Salvia bowleyana HOM05D001184 ORTHO05D003397 4.5e-08 61.6 41 65.9
SGA_v2.0_scaffold299G47730 Striga asiatica HOM05D001184 ORTHO05D003397 4.5e-08 61.6 41 68.3
CSS0035920 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D017717 5.9e-08 61.2 40 67.5
Ca_04924_v3 Cicer arietinum L. HOM05D001184 ORTHO05D003397 5.9e-08 61.2 41 68.3
Lalb_Chr01g0000971 Lupinus albus HOM05D001184 ORTHO05D003397 5.9e-08 61.2 41 65.9
Oeu055765.1 Olea europaea HOM05D001184 ORTHO05D003397 5.9e-08 61.2 41 68.3
Prupe.2G130800 Prunus persica HOM05D001184 ORTHO05D003397 5.9e-08 61.2 40 70.0
Sed0003636 Sechium edule HOM05D001184 ORTHO05D003397 5.9e-08 61.2 41 70.7
VMungo1127G0354 Vigna mungo HOM05D001184 ORTHO05D003397 5.9e-08 61.2 41 68.3
Haze_03548 Corylus avellana HOM05D001184 ORTHO05D003397 7.7e-08 60.8 41 65.9
Lj7C738G14 Lonicera japonica HOM05D000109 ORTHO05D000210 7.7e-08 60.8 41 68.3
Peaxi162Scf00324g00227 Petunia axillaris HOM05D001184 ORTHO05D003397 7.7e-08 60.8 41 63.4
ATR0987G002 Amborella trichopoda HOM05D001184 ORTHO05D003397 1.0e-07 60.5 40 67.5
MD04G1013400 Malus domestica HOM05D001184 ORTHO05D003397 1.0e-07 60.5 40 70.0
Nitab4.5_0002889g0080 Nicotiana tabacum HOM05D001184 ORTHO05D003397 1.0e-07 60.5 41 63.4
Nitab4.5_0009377g0030 Nicotiana tabacum HOM05D001184 ORTHO05D003397 1.0e-07 60.5 41 63.4
PSO339G2903 Papaver somniferum HOM05D001184 ORTHO05D003397 1.0e-07 60.5 40 72.5
Aa31LG9G3730 Aethionema arabicum HOM05D001184 ORTHO05D003397 1.3e-07 60.1 41 63.4
CAN.G305.8 Capsicum annuum HOM05D001184 ORTHO05D003397 1.3e-07 60.1 41 63.4
CARHR219660 Cardamine hirsuta HOM05D001184 ORTHO05D003397 1.3e-07 60.1 40 67.5
Phvul.011G020800 Phaseolus vulgaris HOM05D001184 ORTHO05D003397 1.3e-07 60.1 41 68.3
Duzib268G0787 Durio zibethinus HOM05D001184 ORTHO05D003397 1.7e-07 59.7 41 65.9
Nitab4.5_0000366g0090 Nicotiana tabacum HOM05D001184 ORTHO05D003397 1.7e-07 59.7 40 65.0
Nitab4.5_0002204g0040 Nicotiana tabacum HOM05D001184 ORTHO05D017717 1.7e-07 59.7 40 65.0
Nitab4.5_0002365g0060 Nicotiana tabacum HOM05D001184 ORTHO05D003397 1.7e-07 59.7 40 65.0
Psat7g142560 Pisum sativum HOM05D001184 ORTHO05D003397 1.7e-07 59.7 41 65.9
Psat7g171920 Pisum sativum HOM05D001184 ORTHO05D003397 1.7e-07 59.7 41 65.9
Atru.chr13.1877 Acer truncatum HOM05D001184 ORTHO05D003397 2.3e-07 59.3 41 63.4
Thhalv10024450m.g Eutrema salsugineum HOM05D001184 ORTHO05D003397 2.3e-07 59.3 40 62.5
ECA247G2182 Erigeron canadensis HOM05D001184 ORTHO05D003397 2.9e-07 58.9 41 63.4
Migut.O00219 Erythranthe guttata HOM05D001184 ORTHO05D003397 2.9e-07 58.9 41 68.3
Medtr4g122580 Medicago truncatula HOM05D001184 ORTHO05D003397 2.9e-07 58.9 41 65.9
Atru.chr4.1616 Acer truncatum HOM05D001184 ORTHO05D003397 3.8e-07 58.5 41 61.0
Sopen07g004890 Solanum pennellii HOM05D001184 ORTHO05D003397 3.8e-07 58.5 41 63.4
PGSC0003DMG400028753 Solanum tuberosum HOM05D001184 ORTHO05D003397 3.8e-07 58.5 41 63.4
GSVIVG01038361001 Vitis vinifera HOM05D001184 ORTHO05D003397 3.8e-07 58.5 41 65.9
MBI03_g42549_MAGBIO Magnolia biondii HOM05D001184 ORTHO05D003397 5.0e-07 58.2 41 65.9
SEGI_18693 Sequoiadendron giganteum HOM05D001184 ORTHO05D003397 5.0e-07 58.2 40 62.5
HPP92_023535 Vanilla planifolia HOM05D001184 ORTHO05D003397 5.0e-07 58.2 41 65.9
Hma1.2p1_0187F.1_g082410 Hydrangea macrophylla HOM05D001184 ORTHO05D003397 6.6e-07 57.8 41 65.9
Nn1g07935 Nelumbo nucifera HOM05D001184 ORTHO05D003397 6.6e-07 57.8 41 65.9
Actinidia29359 Actinidia chinensis HOM05D001184 ORTHO05D003397 8.6e-07 57.4 41 63.4
HanXRQChr15g0488241 Helianthus annuus HOM05D001184 ORTHO05D003397 8.6e-07 57.4 43 65.1
Psat7g142400 Pisum sativum HOM05D001184 ORTHO05D003397 8.6e-07 57.4 41 63.4
Aa31LG4G12540 Aethionema arabicum HOM05D001184 ORTHO05D003397 1.5e-06 56.6 41 58.5
MSTRG.4233 Avicennia marina HOM05D001184 ORTHO05D003397 1.5e-06 56.6 41 63.4
CARHR054020 Cardamine hirsuta HOM05D001184 ORTHO05D003397 1.5e-06 56.6 40 60.0
MD04G1013000 Malus domestica HOM05D001184 ORTHO05D017717 1.5e-06 56.6 40 65.0
unitig_32.g10864 Utricularia gibba HOM05D001184 ORTHO05D003397 1.5e-06 56.6 41 61.0
Sp7g11570 Schrenkiella parvula HOM05D001184 ORTHO05D003397 1.9e-06 56.2 40 60.0
HPP92_020335 Vanilla planifolia HOM05D001184 ORTHO05D003397 1.9e-06 56.2 41 61.0
Aa31LG9G3770 Aethionema arabicum HOM05D001184 ORTHO05D007940 2.5e-06 55.8 41 58.5
EL10Ac3g07475 Beta vulgaris HOM05D001184 ORTHO05D003397 2.5e-06 55.8 41 61.0
Lsat_1_v5_gn_2_46341 Lactuca sativa HOM05D001184 ORTHO05D003397 2.5e-06 55.8 41 61.0
MBI06_g27434_MAGBIO Magnolia biondii HOM05D001184 ORTHO05D003397 2.5e-06 55.8 41 63.4
Hund18999 Selenicereus undatus HOM05D001184 ORTHO05D003397 2.5e-06 55.8 41 63.4
AUR62020841 Chenopodium quinoa HOM05D001184 ORTHO05D003397 3.3e-06 55.5 41 61.0
SHI11900 Sapria himalayana HOM05D001184 ORTHO05D003397 3.3e-06 55.5 41 63.4
BcaB02g08652 Brassica carinata HOM05D001184 ORTHO05D003397 4.2e-06 55.1 40 62.5
BcaC07g37333 Brassica carinata HOM05D001184 ORTHO05D003397 4.2e-06 55.1 40 62.5
C08p07710 Brassica napus HOM05D001184 ORTHO05D003397 4.2e-06 55.1 40 62.5
BolC8t47619H Brassica oleracea HOM05D001184 ORTHO05D003397 4.2e-06 55.1 40 62.5
AUR62018575 Chenopodium quinoa HOM05D001184 ORTHO05D003397 4.2e-06 55.1 41 61.0
A08p06650 Brassica napus HOM05D001184 ORTHO05D003397 5.5e-06 54.7 40 62.5
MELO3C020358.2 Cucumis melo HOM05D001184 ORTHO05D003397 5.5e-06 54.7 41 65.9
Pp3c13_2300 Physcomitrium patens HOM05D001184 ORTHO05D003397 5.5e-06 54.7 40 60.0
Pp3c3_5590 Physcomitrium patens HOM05D001184 ORTHO05D003397 5.5e-06 54.7 40 55.0
Cc03_g08090 Coffea canephora HOM05D001184 ORTHO05D003397 7.2e-06 54.3 41 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3561 Anthoceros agrestis HOM05D001184 ORTHO05D003397 9.5e-06 53.9 40 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2232 Anthoceros agrestis HOM05D001184 ORTHO05D003397 9.5e-06 53.9 40 60.0
THA.LOC104804806 Tarenaya hassleriana HOM05D001184 ORTHO05D003397 9.5e-06 53.9 41 61.0


User provided reference genes

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