Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 2.9e-100 368.6 196 100.0
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 5.5e-91 337.8 196 93.4
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 2.7e-85 318.9 196 88.3
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.7e-85 318.9 196 88.3
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.9e-84 315.5 196 86.2
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.9e-83 312.8 196 86.2
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.8e-82 308.9 196 85.7
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 1.4e-78 296.6 196 83.7
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 1.4e-78 296.6 188 85.6
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 8.6e-76 287.3 196 81.1
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 1.1e-67 260.4 193 75.6
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 1.9e-67 259.6 192 76.0
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 1.9e-67 259.6 186 77.4
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 9.5e-67 257.3 195 72.3
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 2.8e-66 255.8 190 74.7
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 6.2e-66 254.6 187 74.9
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 1.1e-65 253.8 196 73.5
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 2.3e-65 252.7 193 73.1
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 2.3e-65 252.7 193 74.6
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 4.0e-65 251.9 184 75.0
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 4.0e-65 251.9 188 73.9
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 6.8e-65 251.1 193 73.1
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 1.5e-64 250.0 186 73.1
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 2.0e-64 249.6 186 74.7
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 3.4e-64 248.8 196 72.4
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 3.4e-64 248.8 184 75.0
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 4.4e-64 248.4 186 74.7
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 4.4e-64 248.4 185 74.6
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 9.9e-64 247.3 192 70.8
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 1.3e-63 246.9 181 76.2
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 1.7e-63 246.5 189 71.4
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 1.7e-63 246.5 186 73.1
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 1.7e-63 246.5 184 76.1
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 1.7e-63 246.5 181 76.2
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 1.7e-63 246.5 198 70.2
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 2.2e-63 246.1 192 69.3
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 2.2e-63 246.1 198 70.2
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 2.9e-63 245.7 189 72.0
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 6.4e-63 244.6 195 70.8
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 6.4e-63 244.6 181 75.1
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 1.4e-62 243.4 187 72.2
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 1.4e-62 243.4 193 71.5
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 1.9e-62 243.0 201 70.1
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 2.4e-62 242.7 186 73.1
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 4.1e-62 241.9 186 72.6
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 5.4e-62 241.5 184 73.9
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 7.1e-62 241.1 179 76.0
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 7.1e-62 241.1 192 70.8
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 9.2e-62 240.7 188 72.3
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 1.6e-61 240.0 184 73.4
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 1.6e-61 240.0 219 64.4
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 2.1e-61 239.6 223 63.2
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 2.7e-61 239.2 185 72.4
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 7.8e-61 237.7 186 71.5
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 7.8e-61 237.7 180 73.9
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 2.3e-60 236.1 186 72.0
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 3.9e-60 235.3 194 69.1
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 6.6e-60 234.6 186 71.0
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 1.1e-59 233.8 186 71.0
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 1.9e-59 233.0 193 67.9
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 4.3e-59 231.9 188 69.1
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 7.3e-59 231.1 184 71.7
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 1.2e-58 230.3 188 68.6
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 1.6e-58 229.9 181 70.7
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 1.6e-58 229.9 187 69.5
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 2.8e-58 229.2 188 67.0
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 2.8e-58 229.2 181 69.6
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 3.6e-58 228.8 189 68.3
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 4.7e-58 228.4 192 68.8
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 4.7e-58 228.4 192 67.7
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 6.2e-58 228.0 184 71.2
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 1.4e-57 226.9 181 70.7
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 1.4e-57 226.9 181 70.7
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 1.8e-57 226.5 191 67.5
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 1.8e-57 226.5 190 69.5
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 2.4e-57 226.1 184 69.6
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 3.1e-57 225.7 187 69.0
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 4.0e-57 225.3 180 68.9
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 6.8e-57 224.6 192 64.6
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 6.8e-57 224.6 194 67.0
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 6.8e-57 224.6 186 68.8
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 6.8e-57 224.6 188 67.6
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 8.9e-57 224.2 180 70.0
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 1.5e-56 223.4 185 68.1
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 3.8e-55 218.8 190 67.9
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 8.4e-55 217.6 204 62.3
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 1.4e-54 216.9 141 80.1
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 5.4e-54 214.9 165 71.5
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 5.1e-52 208.4 193 61.7
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 1.5e-51 206.8 153 75.8
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 1.9e-51 206.5 219 56.2
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 3.3e-51 205.7 193 61.7
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 3.6e-50 202.2 191 58.6
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 2.6e-48 196.1 184 61.4
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 2.2e-47 193.0 178 63.5
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 5.4e-46 188.3 196 51.0
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 2.1e-34 149.8 130 63.8
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 8.4e-31 137.9 194 42.3
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 5.5e-30 135.2 189 43.4
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 2.3e-28 129.8 186 41.4
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 3.0e-20 102.8 145 44.8
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 7.4e-19 98.2 87 64.4
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 1.4e-14 84.0 193 34.7
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 4.3e-11 72.4 53 67.9
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 4.1e-09 65.9 85 49.4
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 5.9e-08 62.0 191 31.9
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.0e-07 61.2 79 46.8
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 3.2e-06 56.2 185 29.2


User provided reference genes

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