Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0324801 Rosa chinensis HOM05D001374 ORTHO05D004296 7.6e-152 540.4 266 100.0
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.7e-143 512.7 266 94.0
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 5.0e-143 511.1 266 93.6
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 6.5e-143 510.8 266 94.0
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 1.1e-142 510.0 266 93.6
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 1.4e-142 509.6 266 93.6
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 1.9e-142 509.2 266 92.9
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 6.1e-141 504.2 266 92.1
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.5e-136 489.6 266 90.6
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 7.5e-115 417.5 268 77.2
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 1.1e-113 413.7 268 77.2
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 4.1e-113 411.8 268 76.9
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 1.9e-110 402.9 270 74.1
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 2.5e-110 402.5 271 74.5
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 7.2e-110 401.0 268 73.5
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 9.5e-110 400.6 270 74.1
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 9.5e-110 400.6 268 73.5
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 9.5e-110 400.6 271 74.2
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 2.1e-109 399.4 270 73.0
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 2.1e-109 399.4 270 73.7
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 2.8e-109 399.1 266 73.7
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 6.1e-109 397.9 268 73.9
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 6.1e-109 397.9 271 74.2
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 8.0e-109 397.5 271 72.7
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 1.0e-108 397.1 268 73.5
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 1.0e-108 397.1 271 73.4
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 1.0e-108 397.1 270 73.0
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 1.4e-108 396.7 271 74.2
CSS0016974 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 1.8e-108 396.4 271 74.2
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.8e-108 396.4 270 72.6
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 1.8e-108 396.4 268 73.1
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 2.3e-108 396.0 270 72.6
Actinidia14906 Actinidia chinensis HOM05D001374 ORTHO05D004296 3.0e-108 395.6 271 73.1
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 3.0e-108 395.6 270 72.6
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 5.2e-108 394.8 268 73.9
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 1.2e-107 393.7 271 73.4
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 1.2e-107 393.7 271 72.3
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 1.2e-107 393.7 268 73.5
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 2.6e-107 392.5 268 73.1
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 4.4e-107 391.7 271 72.0
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 7.5e-107 391.0 271 73.1
Dinv21063 Davidia involucrata HOM05D001374 ORTHO05D004296 7.5e-107 391.0 268 72.0
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 7.5e-107 391.0 268 73.5
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 1.3e-106 390.2 268 72.8
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 1.3e-106 390.2 271 73.8
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 1.7e-106 389.8 269 73.6
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 2.2e-106 389.4 271 73.1
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 2.2e-106 389.4 271 71.2
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 2.2e-106 389.4 272 72.4
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 3.7e-106 388.7 297 68.0
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 4.9e-106 388.3 268 72.0
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 6.3e-106 387.9 268 71.6
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 1.1e-105 387.1 268 71.6
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 1.1e-105 387.1 271 72.0
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 1.4e-105 386.7 271 72.3
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 1.8e-105 386.3 268 72.0
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 2.4e-105 386.0 271 70.1
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 2.4e-105 386.0 265 73.2
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 3.1e-105 385.6 271 73.8
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 3.1e-105 385.6 268 70.9
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 3.1e-105 385.6 268 71.6
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 4.1e-105 385.2 297 67.7
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 7.0e-105 384.4 271 71.2
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 7.0e-105 384.4 268 71.3
EL10Ac7g17806 Beta vulgaris HOM05D001374 ORTHO05D004296 7.0e-105 384.4 268 71.3
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 9.2e-105 384.0 268 70.9
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 9.2e-105 384.0 271 71.2
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 1.2e-104 383.6 271 70.5
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.2e-104 383.6 268 71.3
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 1.6e-104 383.3 271 71.6
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 1.6e-104 383.3 271 70.5
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 1.6e-104 383.3 265 72.1
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 1.6e-104 383.3 271 71.6
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 1.6e-104 383.3 268 70.1
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 2.0e-104 382.9 266 71.1
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 2.0e-104 382.9 265 70.6
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 2.0e-104 382.9 271 70.5
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 2.7e-104 382.5 265 71.3
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 1.3e-103 380.2 268 70.9
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 1.3e-103 380.2 291 67.7
CDE06G1000 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 1.7e-103 379.8 265 72.1
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 1.7e-103 379.8 271 70.8
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 2.3e-103 379.4 272 71.0
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 2.9e-103 379.0 272 71.0
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 2.9e-103 379.0 271 71.2
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 3.8e-103 378.6 272 71.0
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 3.8e-103 378.6 272 71.0
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 6.6e-103 377.9 272 71.0
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 8.6e-103 377.5 272 70.6
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 8.6e-103 377.5 265 71.7
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 8.6e-103 377.5 268 68.7
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 1.5e-102 376.7 269 70.3
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 1.5e-102 376.7 272 71.3
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.5e-102 376.7 268 70.5
Glyma.20G117100 Glycine max HOM05D001374 ORTHO05D004296 1.5e-102 376.7 268 69.0
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 1.5e-102 376.7 268 70.9
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 1.5e-102 376.7 265 71.3
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 1.9e-102 376.3 268 69.8
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 2.5e-102 375.9 271 69.0
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 3.3e-102 375.6 266 70.7
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 4.3e-102 375.2 272 70.6
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 4.3e-102 375.2 271 69.7
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 7.3e-102 374.4 265 70.6
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 7.3e-102 374.4 268 70.9
Atru.chr7.1031 Acer truncatum HOM05D001374 ORTHO05D004296 9.5e-102 374.0 269 71.0
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 9.5e-102 374.0 272 70.2
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 9.5e-102 374.0 271 70.8
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 1.2e-101 373.6 268 68.3
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 1.6e-101 373.2 272 70.2
Lj6C756T1 Lonicera japonica HOM05D001374 ORTHO05D004296 1.6e-101 373.2 268 67.9
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 2.1e-101 372.9 266 70.3
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 2.8e-101 372.5 271 68.6
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 3.6e-101 372.1 268 68.3
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 8.0e-101 370.9 268 68.7
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 6.8e-100 367.9 268 67.5
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 1.2e-99 367.1 265 68.7
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 2.6e-99 365.9 285 67.7
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 3.7e-98 362.1 268 67.9
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 4.9e-98 361.7 268 67.5
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 6.4e-98 361.3 265 67.2
BcaC01g01691 Brassica carinata HOM05D001374 ORTHO05D004296 1.1e-97 360.5 274 67.9
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 1.1e-97 360.5 271 68.3
Zm00001eb337800 Zea mays HOM05D001374 ORTHO05D004296 1.1e-97 360.5 265 67.5
BolC3t19594H Brassica oleracea HOM05D001374 ORTHO05D004296 1.4e-97 360.1 271 67.5
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 1.8e-97 359.8 265 67.5
C03p72940 Brassica napus HOM05D001374 ORTHO05D004296 3.2e-97 359.0 272 67.3
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 3.2e-97 359.0 271 66.8
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 4.1e-97 358.6 253 71.1
AL6G31240 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 7.0e-97 357.8 269 66.9
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 7.0e-97 357.8 265 69.1
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 1.6e-96 356.7 265 68.3
Carub.0003s3008 Capsella rubella HOM05D001374 ORTHO05D004296 1.7e-95 353.2 268 67.9
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 2.3e-95 352.8 264 65.5
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.9e-94 349.7 242 72.3
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 5.6e-94 348.2 269 67.7
BcaB03g12026 Brassica carinata HOM05D001374 ORTHO05D004296 1.6e-93 346.7 265 65.3
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 4.6e-88 328.6 266 62.0
Mapoly0039s0055 Marchantia polymorpha HOM05D001374 ORTHO05D004296 7.8e-88 327.8 266 61.7
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 8.6e-87 324.3 267 64.8
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 7.5e-83 311.2 233 66.1
BcaB03g12025 Brassica carinata HOM05D001374 ORTHO05D004296 5.4e-81 305.1 234 63.7
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 7.1e-81 304.7 262 62.2
Peaxi162Scf00753g00332 Petunia axillaris HOM05D001374 ORTHO05D004296 7.3e-78 294.7 200 72.5
SalBow8G5161 Salvia bowleyana HOM05D001374 ORTHO05D004296 6.4e-74 281.6 195 72.3
Nn4g23889 Nelumbo nucifera HOM05D001374 ORTHO05D004296 3.3e-70 269.2 256 58.2
Cre14.g614900 Chlamydomonas reinhardtii HOM05D001374 ORTHO05D004296 8.1e-69 264.6 265 52.1
SEGI_13900 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 3.1e-68 262.7 192 64.1
SMO361G0624 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 9.0e-68 261.2 263 52.9
SMO361G0577 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 3.4e-67 259.2 263 52.9
Atru.chr11.140 Acer truncatum HOM05D001374 ORTHO05D004296 1.4e-65 253.8 180 70.0
AUR62037316 Chenopodium quinoa HOM05D001374 ORTHO05D004296 4.3e-62 242.3 160 73.1
PRCOL_00001723 Prasinoderma coloniale HOM05D001374 ORTHO05D004296 5.6e-62 241.9 267 48.7
Potri.010G122932 Populus trichocarpa HOM05D001374 ORTHO05D004296 1.6e-56 223.8 165 69.7
SGA_v2.0_scaffold32G13114 Striga asiatica HOM05D001374 ORTHO05D004296 2.4e-52 209.9 205 56.1
AT5G19720 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 4.5e-51 205.7 196 54.6
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 2.7e-48 196.4 267 44.2
BraA08t34642Z Brassica rapa HOM05D001374 ORTHO05D004296 9.6e-46 188.0 154 63.6
RcHm_v2.0_Chr6g0267571 Rosa chinensis HOM05D001374 ORTHO05D004296 2.9e-42 176.4 139 69.8
A08p26960 Brassica napus HOM05D001374 ORTHO05D004296 1.1e-38 164.5 140 60.7
CDE07G1238 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 4.8e-37 159.1 100 76.0
MCO01G766 Micromonas commoda HOM05D001374 ORTHO05D004296 3.4e-35 152.9 285 37.9
AagrBONN_evm.TU.Sc2ySwM_117.3741 Anthoceros agrestis HOM05D001374 ORTHO05D004296 4.2e-33 146.0 127 59.8
Cfa026985 Carpinus fangiana HOM05D000278 ORTHO05D004673 2.1e-32 143.7 291 36.1
Haze_26608 Corylus avellana HOM05D001374 ORTHO05D004296 4.8e-29 132.5 266 33.5
Atru.chr11.139 Acer truncatum HOM05D001374 ORTHO05D004296 4.8e-21 105.9 77 70.1
CARHR061020 Cardamine hirsuta HOM05D001374 ORTHO05D031706 6.3e-21 105.5 66 81.8
CARHR061010 Cardamine hirsuta HOM05D001374 ORTHO05D004296 4.1e-20 102.8 77 66.2
Lalb_Chr21g0308841 Lupinus albus HOM05D001374 ORTHO05D004296 6.5e-18 95.5 137 46.7
BcaB06g26059 Brassica carinata HOM05D001374 ORTHO05D031706 3.3e-14 83.2 72 58.3
AT1G68325 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 7.4e-14 82.0 69 60.9
DCAR_007251 Daucus carota HOM05D001374 ORTHO05D004296 5.9e-11 72.4 87 48.3
RcHm_v2.0_Chr1g0324551 Rosa chinensis HOM05D001374 ORTHO05D031706 1.9e-09 67.4 38 89.5


User provided reference genes

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