Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0324531 Rosa chinensis HOM05D001374 ORTHO05D004296 2.5e-26 121.3 59 100.0
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 5.1e-24 113.6 55 96.4
RcHm_v2.0_Chr1g0324791 Rosa chinensis HOM05D001374 ORTHO05D004296 1.1e-23 112.5 55 94.5
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 1.5e-23 112.1 55 94.5
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.5e-23 112.1 55 94.5
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.5e-23 112.1 55 94.5
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.5e-23 112.1 55 94.5
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.5e-23 112.1 55 94.5
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.5e-23 112.1 55 94.5
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 1.5e-23 112.1 55 94.5
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 2.5e-23 111.3 55 94.5
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 2.5e-23 111.3 55 94.5
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 2.5e-23 111.3 55 94.5
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 2.5e-23 111.3 55 94.5
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 3.3e-23 110.9 55 92.7
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 5.7e-23 110.2 55 92.7
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 9.7e-23 109.4 55 90.9
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 9.7e-23 109.4 55 90.9
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 9.7e-23 109.4 55 90.9
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 1.3e-22 109.0 55 90.9
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 1.3e-22 109.0 55 90.9
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 1.3e-22 109.0 55 90.9
Atru.chr11.140 Acer truncatum HOM05D001374 ORTHO05D004296 1.6e-22 108.6 55 90.9
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 1.6e-22 108.6 55 89.1
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 1.6e-22 108.6 55 89.1
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 1.6e-22 108.6 55 89.1
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 1.6e-22 108.6 55 89.1
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 2.2e-22 108.2 55 89.1
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 2.8e-22 107.8 55 87.3
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 2.8e-22 107.8 55 87.3
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 2.8e-22 107.8 55 89.1
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 2.8e-22 107.8 55 89.1
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 3.7e-22 107.5 55 87.3
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 3.7e-22 107.5 55 87.3
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 3.7e-22 107.5 55 87.3
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 3.7e-22 107.5 55 89.1
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 3.7e-22 107.5 54 88.9
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 3.7e-22 107.5 55 87.3
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 3.7e-22 107.5 55 87.3
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 3.7e-22 107.5 55 89.1
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 3.7e-22 107.5 55 90.9
Actinidia14906 Actinidia chinensis HOM05D001374 ORTHO05D004296 4.8e-22 107.1 55 87.3
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 4.8e-22 107.1 54 88.9
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 4.8e-22 107.1 54 90.7
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 4.8e-22 107.1 55 87.3
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 4.8e-22 107.1 55 87.3
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 4.8e-22 107.1 54 88.9
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 4.8e-22 107.1 55 87.3
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 87.3
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 89.1
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 87.3
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 87.3
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 87.3
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 87.3
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 87.3
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 6.3e-22 106.7 54 88.9
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 87.3
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 85.5
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 6.3e-22 106.7 55 87.3
CSS0016974 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 8.2e-22 106.3 55 85.5
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 8.2e-22 106.3 55 85.5
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 8.2e-22 106.3 55 87.3
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 8.2e-22 106.3 55 85.5
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 8.2e-22 106.3 55 89.1
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 8.2e-22 106.3 55 85.5
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 1.1e-21 105.9 55 85.5
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 1.1e-21 105.9 55 85.5
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 1.4e-21 105.5 55 85.5
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.4e-21 105.5 55 85.5
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 1.4e-21 105.5 55 89.1
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 1.4e-21 105.5 55 87.3
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 1.4e-21 105.5 55 85.5
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 1.8e-21 105.1 54 85.2
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 1.8e-21 105.1 56 85.7
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 1.8e-21 105.1 56 85.7
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 2.4e-21 104.8 55 87.3
SalBow8G5161 Salvia bowleyana HOM05D001374 ORTHO05D004296 2.4e-21 104.8 55 85.5
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 3.1e-21 104.4 55 85.5
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 3.1e-21 104.4 54 87.0
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 3.1e-21 104.4 55 85.5
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 4.1e-21 104.0 55 85.5
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 4.1e-21 104.0 54 85.2
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 4.1e-21 104.0 54 85.2
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 4.1e-21 104.0 55 83.6
Glyma.06G203400 Glycine max HOM05D001374 ORTHO05D004296 4.1e-21 104.0 55 85.5
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 4.1e-21 104.0 55 85.5
Glyma.20G117100 Glycine max HOM05D001374 ORTHO05D004296 4.1e-21 104.0 55 85.5
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 4.1e-21 104.0 55 85.5
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 4.1e-21 104.0 55 81.8
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 4.1e-21 104.0 55 83.6
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 5.3e-21 103.6 54 87.0
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 6.9e-21 103.2 55 83.6
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 6.9e-21 103.2 54 85.2
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 6.9e-21 103.2 55 81.8
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 9.0e-21 102.8 54 83.3
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 9.0e-21 102.8 55 80.0
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 9.0e-21 102.8 55 80.0
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 9.0e-21 102.8 55 80.0
SGA_v2.0_scaffold32G13114 Striga asiatica HOM05D001374 ORTHO05D004296 9.0e-21 102.8 55 83.6
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 9.0e-21 102.8 54 85.2
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 1.2e-20 102.4 54 85.2
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 1.2e-20 102.4 54 87.0
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 1.2e-20 102.4 55 85.5
Dinv21063 Davidia involucrata HOM05D001374 ORTHO05D004296 1.5e-20 102.1 54 85.2
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 2.0e-20 101.7 55 81.8
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 2.0e-20 101.7 55 83.6
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 2.0e-20 101.7 54 83.3
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 2.0e-20 101.7 54 87.0
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 2.6e-20 101.3 54 83.3
EL10Ac7g17806 Beta vulgaris HOM05D001374 ORTHO05D004296 3.4e-20 100.9 57 78.9
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 3.4e-20 100.9 54 83.3
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 3.4e-20 100.9 54 83.3
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 3.4e-20 100.9 54 85.2
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 3.4e-20 100.9 55 85.5
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 4.5e-20 100.5 54 83.3
Carub.0003s3008 Capsella rubella HOM05D001374 ORTHO05D004296 5.9e-20 100.1 55 80.0
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 5.9e-20 100.1 54 85.2
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 5.9e-20 100.1 55 80.0
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 1.0e-19 99.4 54 83.3
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 1.0e-19 99.4 54 83.3
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 1.0e-19 99.4 55 85.5
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 1.0e-19 99.4 55 83.6
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 2.2e-19 98.2 52 80.8
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 6.5e-19 96.7 54 77.8
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 6.5e-19 96.7 54 77.8
AL6G31240 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 1.1e-18 95.9 55 76.4
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 1.1e-18 95.9 55 81.8
Cre14.g614900 Chlamydomonas reinhardtii HOM05D001374 ORTHO05D004296 1.4e-18 95.5 54 75.9
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 1.4e-18 95.5 53 81.1
AagrBONN_evm.TU.Sc2ySwM_117.3741 Anthoceros agrestis HOM05D001374 ORTHO05D004296 5.5e-18 93.6 54 77.8
Mapoly0039s0055 Marchantia polymorpha HOM05D001374 ORTHO05D004296 5.5e-18 93.6 54 79.6
Zm00001eb337800 Zea mays HOM05D001374 ORTHO05D004296 7.2e-18 93.2 55 80.0
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 2.1e-17 91.7 54 75.9
PRCOL_00001723 Prasinoderma coloniale HOM05D001374 ORTHO05D004296 4.6e-17 90.5 54 74.1
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 7.9e-17 89.7 54 74.1
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 5.1e-16 87.0 52 78.8
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 1.1e-15 85.9 49 77.6
Atru.chr7.1031 Acer truncatum HOM05D001374 ORTHO05D004296 1.5e-15 85.5 49 81.6
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 2.5e-15 84.7 49 77.6
Lj6C756T1 Lonicera japonica HOM05D001374 ORTHO05D004296 3.3e-15 84.3 45 80.0
Peaxi162Scf00753g00332 Petunia axillaris HOM05D001374 ORTHO05D004296 3.3e-15 84.3 49 75.5
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 3.3e-15 84.3 52 69.2
SMO361G0577 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 7.4e-15 83.2 55 67.3
SMO361G0624 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 9.7e-15 82.8 55 67.3
CARHR061030 Cardamine hirsuta HOM05D001374 ORTHO05D004296 1.3e-14 82.4 49 75.5
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 1.3e-14 82.4 45 82.2
Glyma.17G205500 Glycine max HOM05D001374 ORTHO05D004296 6.5e-11 70.1 38 81.6
CDE06G1000 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 8.5e-11 69.7 36 88.9
Potri.010G122932 Populus trichocarpa HOM05D001374 ORTHO05D004296 1.2e-09 65.9 36 83.3
Haze_26608 Corylus avellana HOM05D001374 ORTHO05D004296 2.7e-09 64.7 54 57.4
MCO01G766 Micromonas commoda HOM05D001374 ORTHO05D004296 1.8e-08 62.0 53 49.1


User provided reference genes

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