Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322251 Rosa chinensis HOM05D002650 ORTHO05D002924 1.2e-92 343.2 173 100.0
RcHm_v2.0_Chr4g0386441 Rosa chinensis HOM05D002650 ORTHO05D002924 2.1e-86 322.4 167 96.4
FAN17G0389 Fragaria x ananassa HOM05D002650 ORTHO05D002924 6.0e-81 304.3 170 89.4
FAN22G1889 Fragaria x ananassa HOM05D002650 ORTHO05D002924 3.9e-80 301.6 165 90.3
FvH4_4g00720 Fragaria vesca HOM05D002650 ORTHO05D002924 5.1e-80 301.2 169 89.9
MD13G1197200 Malus domestica HOM05D002650 ORTHO05D002924 3.1e-69 265.4 169 78.7
TAR362G0085 Trochodendron aralioides HOM05D002650 ORTHO05D002924 5.8e-68 261.2 169 78.7
Atru.chr4.2421 Acer truncatum HOM05D002650 ORTHO05D002924 3.8e-67 258.5 162 79.0
QL06p001588 Quercus lobata HOM05D002650 ORTHO05D002924 1.9e-66 256.1 162 78.4
CiPaw.01G197800 Carya illinoinensis HOM05D002650 ORTHO05D002924 7.1e-66 254.2 169 75.7
Duzib052G0834 Durio zibethinus HOM05D002650 ORTHO05D002924 1.6e-65 253.1 169 74.0
Prupe.1G018300 Prunus persica HOM05D002650 ORTHO05D002924 2.7e-65 252.3 158 79.7
CANSAT78G1249 Cannabis sativa HOM05D002650 ORTHO05D002924 3.5e-65 251.9 169 75.1
Cfa008466 Carpinus fangiana HOM05D002650 ORTHO05D002924 3.5e-65 251.9 158 78.5
CSS0049240 Camellia sinensis var. sinensis HOM05D002650 ORTHO05D002924 7.9e-65 250.8 161 76.4
Nn1g02387 Nelumbo nucifera HOM05D002650 ORTHO05D002924 7.9e-65 250.8 169 76.3
Lj3A731G60 Lonicera japonica HOM05D002650 ORTHO05D002924 1.0e-64 250.4 160 77.5
FAN12G3299 Fragaria x ananassa HOM05D002650 ORTHO05D002924 1.8e-64 249.6 129 93.8
Actinidia08479 Actinidia chinensis HOM05D002650 ORTHO05D002924 6.7e-64 247.7 169 74.0
Nitab4.5_0000085g0370 Nicotiana tabacum HOM05D002650 ORTHO05D002924 8.7e-64 247.3 165 73.9
Potri.010G084100 Populus trichocarpa HOM05D002650 ORTHO05D002924 1.1e-63 246.9 172 71.5
COL.COLO4_21524 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.5e-63 246.5 168 70.8
LjContig00408g0012632 Lotus japonicus HOM05D002650 ORTHO05D002924 4.3e-63 245.0 169 72.8
Rhsim02G0027100 Rhododendron simsii HOM05D002650 ORTHO05D002924 5.6e-63 244.6 162 74.1
Sabra10G0058900 Salix brachista HOM05D002650 ORTHO05D002924 9.6e-63 243.8 164 73.2
Ca_24415_v3 Cicer arietinum L. HOM05D002650 ORTHO05D002924 1.3e-62 243.4 163 72.4
Glyma.01G235700 Glycine max HOM05D002650 ORTHO05D002924 1.3e-62 243.4 161 73.3
Manes.03G175500 Manihot esculenta HOM05D002650 ORTHO05D002924 1.3e-62 243.4 169 72.2
Phvul.002G043200 Phaseolus vulgaris HOM05D002650 ORTHO05D002924 2.1e-62 242.7 168 71.4
Eucgr.B01054 Eucalyptus grandis HOM05D002650 ORTHO05D002924 4.8e-62 241.5 160 72.5
Psat2g190360 Pisum sativum HOM05D002650 ORTHO05D002924 6.2e-62 241.1 169 69.8
Ciclev10004646m.g Citrus clementina HOM05D002650 ORTHO05D002924 8.1e-62 240.7 158 73.4
Cc03_g04080 Coffea canephora HOM05D002650 ORTHO05D002924 8.1e-62 240.7 170 72.4
VMungo1215G1359 Vigna mungo HOM05D002650 ORTHO05D002924 1.8e-61 239.6 169 70.4
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 2.4e-61 239.2 148 78.4
TPR.G37883 Trifolium pratense HOM05D002650 ORTHO05D002924 2.4e-61 239.2 162 71.6
Peaxi162Scf00092g00119 Petunia axillaris HOM05D002650 ORTHO05D002924 3.1e-61 238.8 169 70.4
Oeu010308.1 Olea europaea HOM05D002650 ORTHO05D002924 5.3e-61 238.0 162 72.8
ClCG05G005000 Citrullus lanatus HOM05D002650 ORTHO05D002924 6.9e-61 237.7 162 75.3
CAN.G1476.5 Capsicum annuum HOM05D002650 ORTHO05D002924 9.0e-61 237.3 163 71.2
Lalb_Chr09g0319991 Lupinus albus HOM05D002650 ORTHO05D002924 1.5e-60 236.5 169 71.6
Hma1.2p1_1572F.1_g291490 Hydrangea macrophylla HOM05D002650 ORTHO05D002924 2.6e-60 235.7 162 72.8
Aqoxy5G00427 Aquilegia oxysepala HOM05D002650 ORTHO05D002924 3.4e-60 235.3 162 71.0
Sc13g0004600 Simmondsia chinensis HOM05D002650 ORTHO05D002924 2.9e-59 232.3 150 75.3
GSVIVG01018014001 Vitis vinifera HOM05D002650 ORTHO05D002924 4.9e-59 231.5 164 71.3
Lsat_1_v5_gn_4_29301 Lactuca sativa HOM05D002650 ORTHO05D002924 6.5e-59 231.1 146 76.0
Sopen09g031260 Solanum pennellii HOM05D002650 ORTHO05D002924 6.5e-59 231.1 162 70.4
Medtr5g006660 Medicago truncatula HOM05D002650 ORTHO05D002924 8.4e-59 230.7 162 67.9
PSO832G4510 Papaver somniferum HOM05D002650 ORTHO05D002924 8.4e-59 230.7 152 72.4
Gohir.D09G220400 Gossypium hirsutum HOM05D002650 ORTHO05D002924 1.1e-58 230.3 169 68.0
Gorai.006G241400 Gossypium raimondii HOM05D002650 ORTHO05D002924 1.1e-58 230.3 169 68.0
TWI09G0495 Tripterygium wilfordii HOM05D002650 ORTHO05D002924 1.9e-58 229.6 159 71.1
Sed0009300 Sechium edule HOM05D002650 ORTHO05D002924 3.2e-58 228.8 153 72.5
PSO210G7121 Papaver somniferum HOM05D002650 ORTHO05D002924 5.5e-58 228.0 150 72.0
EL10Ac3g06476 Beta vulgaris HOM05D002650 ORTHO05D002924 9.3e-58 227.3 178 65.7
MELO3C006514.2 Cucumis melo HOM05D002650 ORTHO05D002924 2.1e-57 226.1 156 70.5
CsaV3_3G013050 Cucumis sativus L. HOM05D002650 ORTHO05D002924 2.1e-57 226.1 162 69.8
Gohir.A09G217900 Gossypium hirsutum HOM05D002650 ORTHO05D002924 3.5e-57 225.3 169 67.5
HanXRQChr17g0564431 Helianthus annuus HOM05D002650 ORTHO05D002924 6.0e-57 224.6 150 71.3
arahy.Tifrunner.gnm1.ann1.K69D77 Arachis hypogaea HOM05D002650 ORTHO05D002924 7.9e-57 224.2 161 72.0
AUR62033652 Chenopodium quinoa HOM05D002650 ORTHO05D002924 1.3e-56 223.4 170 63.5
Zm00001eb057040 Zea mays HOM05D002650 ORTHO05D002924 1.3e-56 223.4 143 71.3
arahy.Tifrunner.gnm1.ann1.4M845G Arachis hypogaea HOM05D002650 ORTHO05D002924 2.3e-56 222.6 159 71.7
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.0e-56 222.2 161 69.6
MSTRG.24731 Avicennia marina HOM05D002650 ORTHO05D002924 6.7e-56 221.1 159 69.2
Dinv14024 Davidia involucrata HOM05D002650 ORTHO05D002924 8.7e-56 220.7 129 82.2
ECA234G0728 Erigeron canadensis HOM05D002650 ORTHO05D002924 1.1e-55 220.3 149 71.8
HPP92_026615 Vanilla planifolia HOM05D002650 ORTHO05D002924 1.5e-55 219.9 156 67.9
Os03g0746500 Oryza sativa ssp. japonica HOM05D002650 ORTHO05D002924 1.9e-55 219.5 146 70.5
HPP92_024843 Vanilla planifolia HOM05D002650 ORTHO05D002924 2.5e-55 219.2 156 67.9
PGR129G0015 Punica granatum HOM05D002650 ORTHO05D002924 9.6e-55 217.2 150 67.3
PGR142G2346 Punica granatum HOM05D002650 ORTHO05D002924 9.6e-55 217.2 150 67.3
Glyma.11G007500 Glycine max HOM05D002650 ORTHO05D002924 1.3e-54 216.9 143 74.8
AUR62042447 Chenopodium quinoa HOM05D002650 ORTHO05D002924 1.6e-54 216.5 189 57.7
Migut.N00200 Erythranthe guttata HOM05D002650 ORTHO05D002924 1.6e-54 216.5 146 72.6
Cpa.g.sc58.68 Carica papaya HOM05D002650 ORTHO05D002924 3.7e-54 215.3 149 72.5
THA.LOC104808563 Tarenaya hassleriana HOM05D002650 ORTHO05D002924 1.4e-53 213.4 165 66.1
vmacro15359 Vaccinium macrocarpon HOM05D002650 ORTHO05D002924 3.4e-52 208.8 169 64.5
AT4G14790 Arabidopsis thaliana HOM05D002650 ORTHO05D002924 5.0e-51 204.9 136 71.3
unitig_46.g18610 Utricularia gibba HOM05D002650 ORTHO05D002924 1.9e-50 203.0 162 61.7
Sp7g12920 Schrenkiella parvula HOM05D002650 ORTHO05D002924 2.5e-50 202.6 149 65.1
Carub.0007s2734 Capsella rubella HOM05D002650 ORTHO05D002924 1.2e-49 200.3 136 69.1
AL7G41080 Arabidopsis lyrata HOM05D002650 ORTHO05D002924 2.7e-49 199.1 136 68.4
BcaC09g50160 Brassica carinata HOM05D002650 ORTHO05D002924 2.7e-49 199.1 156 62.8
C01p28320 Brassica napus HOM05D002650 ORTHO05D002924 2.7e-49 199.1 156 62.8
BolC1t02761H Brassica oleracea HOM05D002650 ORTHO05D002924 2.7e-49 199.1 156 62.8
A01p22760 Brassica napus HOM05D002650 ORTHO05D002924 3.5e-49 198.7 156 62.8
BraA01t02188Z Brassica rapa HOM05D002650 ORTHO05D002924 3.5e-49 198.7 156 62.8
AUR62034732 Chenopodium quinoa HOM05D002650 ORTHO05D002924 4.6e-49 198.4 188 55.3
BcaNung00333 Brassica carinata HOM05D002650 ORTHO05D002924 7.9e-49 197.6 139 66.9
Aa31LG9G2580 Aethionema arabicum HOM05D002650 ORTHO05D002924 1.0e-48 197.2 138 68.8
Nitab4.5_0001547g0040 Nicotiana tabacum HOM05D002650 ORTHO05D002924 1.5e-47 193.4 165 61.8
Thhalv10025349m.g Eutrema salsugineum HOM05D002650 ORTHO05D002924 2.5e-47 192.6 136 67.6
ATR0665G409 Amborella trichopoda HOM05D002650 ORTHO05D002924 7.4e-47 191.0 129 69.0
RcHm_v2.0_Chr1g0322241 Rosa chinensis HOM05D002650 ORTHO05D002924 7.2e-42 174.5 95 94.7
Hund12093 Selenicereus undatus HOM05D002650 ORTHO05D002924 9.1e-37 157.5 162 53.7
Oeu010309.1 Olea europaea HOM05D000352 ORTHO05D002924 2.7e-33 146.0 105 66.7
SGA_v2.0_scaffold79G25580 Striga asiatica HOM05D002650 ORTHO05D002924 6.1e-33 144.8 142 52.8
MD16G1197400 Malus domestica HOM05D002650 ORTHO05D002924 4.8e-30 135.2 129 55.0
SMO196G0191 Selaginella moellendorffii HOM05D002650 ORTHO05D002924 2.6e-28 129.4 127 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3584 Anthoceros agrestis HOM05D002650 ORTHO05D002924 7.7e-28 127.9 125 44.8
DCAR_024182 Daucus carota HOM05D002650 ORTHO05D002924 2.0e-23 113.2 133 49.6
Haze_11208 Corylus avellana HOM05D002650 ORTHO05D002924 2.2e-19 99.8 93 61.3
MCO16G401 Micromonas commoda HOM05D002650 ORTHO05D002924 1.5e-15 87.0 128 35.2
SMO196G0155 Selaginella moellendorffii HOM05D019491 ORTHO05D375064 7.0e-13 78.2 108 39.8
Aqoxy3G00648 Aquilegia oxysepala HOM05D002650 ORTHO05D002924 1.1e-10 70.9 142 31.7
HanXRQChr16g0529961 Helianthus annuus HOM05D002650 ORTHO05D002924 1.9e-10 70.1 159 31.4
Actinidia06482 Actinidia chinensis HOM05D002650 ORTHO05D002924 2.5e-10 69.7 158 31.0
Os04g0459800 Oryza sativa ssp. japonica HOM05D002650 ORTHO05D002924 2.5e-10 69.7 158 31.0
CDE04G2869 Ceratophyllum demersum HOM05D002650 ORTHO05D002924 3.2e-10 69.3 43 69.8
AT5G39840 Arabidopsis thaliana HOM05D002650 ORTHO05D002924 4.2e-10 68.9 155 27.7
Manes.01G090100 Manihot esculenta HOM05D002650 ORTHO05D002924 4.2e-10 68.9 142 31.7
Rhsim10G0180200 Rhododendron simsii HOM05D002650 ORTHO05D002924 4.2e-10 68.9 154 30.5
Ciclev10011090m.g Citrus clementina HOM05D002650 ORTHO05D002924 5.5e-10 68.6 120 34.2
Sed0002537 Sechium edule HOM05D002650 ORTHO05D002924 5.5e-10 68.6 154 29.2
Duzib147G0083 Durio zibethinus HOM05D002650 ORTHO05D002924 7.2e-10 68.2 120 34.2
MBI06_g06491_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 7.2e-10 68.2 152 29.6
A07p03670 Brassica napus HOM05D002650 ORTHO05D002924 9.4e-10 67.8 55 63.6
MELO3C021203.2 Cucumis melo HOM05D002650 ORTHO05D002924 9.4e-10 67.8 119 33.6
Prupe.3G268500 Prunus persica HOM05D002650 ORTHO05D002924 9.4e-10 67.8 120 34.2
MBI05_g08280_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.2e-09 67.4 127 32.3
Haze_26870 Corylus avellana HOM05D002650 ORTHO05D002924 1.6e-09 67.0 111 30.6
Eucgr.E04299 Eucalyptus grandis HOM05D002650 ORTHO05D002924 1.6e-09 67.0 120 33.3
HanXRQChr07g0191751 Helianthus annuus HOM05D002650 ORTHO05D002924 1.6e-09 67.0 159 30.2
Lsat_1_v5_gn_2_68300 Lactuca sativa HOM05D002650 ORTHO05D002924 1.6e-09 67.0 159 31.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.1e-09 66.6 120 33.3
CsaV3_6G000630 Cucumis sativus L. HOM05D002650 ORTHO05D002924 2.7e-09 66.2 119 33.6
FAN02G3124 Fragaria x ananassa HOM05D002650 ORTHO05D002924 2.7e-09 66.2 120 34.2
Lalb_Chr02g0159671 Lupinus albus HOM05D002650 ORTHO05D002924 2.7e-09 66.2 154 29.9
MD17G1050500 Malus domestica HOM05D002650 ORTHO05D002924 2.7e-09 66.2 130 31.5
SMO356G0765 Selaginella moellendorffii HOM05D002650 ORTHO05D002924 2.7e-09 66.2 156 29.5
TWI60G0183 Tripterygium wilfordii HOM05D002650 ORTHO05D002924 2.7e-09 66.2 120 32.5
Aqoxy3G03365 Aquilegia oxysepala HOM05D002650 ORTHO05D002924 3.6e-09 65.9 126 31.7
Ca_20736_v3 Cicer arietinum L. HOM05D002650 ORTHO05D002924 3.6e-09 65.9 164 29.9
TAR629G2089 Trochodendron aralioides HOM05D002650 ORTHO05D002924 3.6e-09 65.9 120 31.7
TAR629G3266 Trochodendron aralioides HOM05D002650 ORTHO05D002924 3.6e-09 65.9 120 31.7
Cfa007541 Carpinus fangiana HOM05D002650 ORTHO05D002924 4.7e-09 65.5 159 28.3
Gohir.A09G017050 Gossypium hirsutum HOM05D002650 ORTHO05D002924 4.7e-09 65.5 120 32.5
Thecc.04G080400 Theobroma cacao HOM05D002650 ORTHO05D002924 4.7e-09 65.5 120 33.3
ATR0564G515 Amborella trichopoda HOM05D002650 ORTHO05D002924 6.1e-09 65.1 136 31.6
Dinv19048 Davidia involucrata HOM05D002650 ORTHO05D002924 6.1e-09 65.1 131 32.1
Psat1g074520 Pisum sativum HOM05D002650 ORTHO05D002924 6.1e-09 65.1 140 30.7
vmacro20586 Vaccinium macrocarpon HOM05D002650 ORTHO05D002924 6.1e-09 65.1 120 32.5
Haze_14545 Corylus avellana HOM05D002650 ORTHO05D002924 1.0e-08 64.3 120 31.7
ECA238G2441 Erigeron canadensis HOM05D002650 ORTHO05D002924 1.0e-08 64.3 159 28.9
FvH4_6g26790 Fragaria vesca HOM05D002650 ORTHO05D002924 1.0e-08 64.3 120 33.3
FAN14G0746 Fragaria x ananassa HOM05D002650 ORTHO05D002924 1.0e-08 64.3 120 33.3
Gohir.D09G015700 Gossypium hirsutum HOM05D002650 ORTHO05D002924 1.0e-08 64.3 120 32.5
Gorai.006G017900 Gossypium raimondii HOM05D002650 ORTHO05D002924 1.0e-08 64.3 120 32.5
FAN05G0367 Fragaria x ananassa HOM05D002650 ORTHO05D002924 1.4e-08 63.9 120 33.3
QL01p016137 Quercus lobata HOM05D002650 ORTHO05D002924 1.8e-08 63.5 119 32.8
QL11p025200 Quercus lobata HOM05D002650 ORTHO05D002924 1.8e-08 63.5 119 32.8
QL12p000968 Quercus lobata HOM05D002650 ORTHO05D002924 1.8e-08 63.5 119 32.8
RcHm_v2.0_Chr2g0168661 Rosa chinensis HOM05D002650 ORTHO05D002924 1.8e-08 63.5 120 33.3
SMO196G0031 Selaginella moellendorffii HOM05D019491 ORTHO05D377240 1.8e-08 63.5 164 26.2
CDE04G1324 Ceratophyllum demersum HOM05D002650 ORTHO05D002924 2.3e-08 63.2 155 29.0
FvH4_7g07700 Fragaria vesca HOM05D002650 ORTHO05D002924 2.3e-08 63.2 120 32.5
PSO675G8623 Papaver somniferum HOM05D002650 ORTHO05D002924 2.3e-08 63.2 131 30.5
Atru.chr8.143 Acer truncatum HOM05D002650 ORTHO05D002924 3.0e-08 62.8 119 31.1
CANSAT64G1048 Cannabis sativa HOM05D002650 ORTHO05D002924 3.0e-08 62.8 120 31.7
Lj4P259T23 Lonicera japonica HOM05D002650 ORTHO05D002924 3.0e-08 62.8 153 29.4
Aa31LG9G16330 Aethionema arabicum HOM05D002650 ORTHO05D002924 4.0e-08 62.4 156 27.6
AL7G50400 Arabidopsis lyrata HOM05D002650 ORTHO05D002924 4.0e-08 62.4 157 26.1
Cre06.g270900 Chlamydomonas reinhardtii HOM05D002650 ORTHO05D002924 4.0e-08 62.4 107 34.6
PSO832G1866 Papaver somniferum HOM05D002650 ORTHO05D002924 4.0e-08 62.4 124 30.6
Zm00001eb080820 Zea mays HOM05D002650 ORTHO05D002924 4.0e-08 62.4 126 31.0
CARHR262390 Cardamine hirsuta HOM05D002650 ORTHO05D002924 6.8e-08 61.6 146 28.8
Haze_11209 Corylus avellana HOM05D002650 ORTHO05D013293 6.8e-08 61.6 77 44.2
SHI06833 Sapria himalayana HOM05D002650 ORTHO05D002924 6.8e-08 61.6 155 27.1
SEGI_36430 Sequoiadendron giganteum HOM05D002650 ORTHO05D002924 8.8e-08 61.2 43 58.1
CDE07G1280 Ceratophyllum demersum HOM05D002650 ORTHO05D002924 1.5e-07 60.5 154 28.6
Potri.017G081900 Populus trichocarpa HOM05D002650 ORTHO05D002924 2.0e-07 60.1 124 31.5
Sabra17G0072900 Salix brachista HOM05D002650 ORTHO05D002924 2.0e-07 60.1 124 31.5
FAN06G5007 Fragaria x ananassa HOM05D002650 ORTHO05D002924 4.4e-07 58.9 120 31.7
Pp3c11_24680 Physcomitrium patens HOM05D002650 ORTHO05D002924 5.7e-07 58.5 129 27.1
GSVIVG01018016001 Vitis vinifera HOM05D002650 ORTHO05D002924 5.7e-07 58.5 57 56.1
CiPaw.04G017900 Carya illinoinensis HOM05D002650 ORTHO05D002924 7.5e-07 58.2 121 30.6


User provided reference genes

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