Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320871 Rosa chinensis HOM05D004477 ORTHO05D005615 3.9e-40 167.5 78 100.0
RcHm_v2.0_Chr1g0319831 Rosa chinensis HOM05D004477 ORTHO05D005615 2.2e-22 108.6 75 72.0
RcHm_v2.0_Chr1g0320961 Rosa chinensis HOM05D004477 ORTHO05D005615 2.2e-22 108.6 75 72.0
RcHm_v2.0_Chr1g0321121 Rosa chinensis HOM05D004477 ORTHO05D005615 2.2e-22 108.6 75 72.0
FvH4_7g02470 Fragaria vesca HOM05D004477 ORTHO05D005615 6.3e-22 107.1 75 70.7
FAN06G1855 Fragaria x ananassa HOM05D004477 ORTHO05D005615 6.3e-22 107.1 75 70.7
FAN10G1920 Fragaria x ananassa HOM05D004477 ORTHO05D005615 6.3e-22 107.1 75 70.7
FAN03G1284 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.1e-21 106.3 70 74.3
RcHm_v2.0_Chr1g0320641 Rosa chinensis HOM05D004477 ORTHO05D005615 1.8e-21 105.5 75 70.7
Eucgr.G03251 Eucalyptus grandis HOM05D004477 ORTHO05D005615 1.7e-19 99.0 75 62.7
Prupe.2G030400 Prunus persica HOM05D004477 ORTHO05D005615 1.7e-19 99.0 75 62.7
Atru.chr3.2871 Acer truncatum HOM05D004477 ORTHO05D005615 2.3e-19 98.6 75 62.7
CSS0003663 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 2.9e-19 98.2 75 61.3
CSS0028927 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 2.9e-19 98.2 75 61.3
Lj7A582G32 Lonicera japonica HOM05D004477 ORTHO05D005615 3.8e-19 97.8 75 61.3
Manes.11G003480 Manihot esculenta HOM05D004477 ORTHO05D005615 3.8e-19 97.8 75 60.0
Rhsim07G0063100 Rhododendron simsii HOM05D004477 ORTHO05D005615 5.0e-19 97.4 74 60.8
vmacro13733 Vaccinium macrocarpon HOM05D004477 ORTHO05D005615 6.6e-19 97.1 75 60.0
FvH4_7g04360 Fragaria vesca HOM05D004477 ORTHO05D005615 8.6e-19 96.7 75 64.0
Actinidia06268 Actinidia chinensis HOM05D004477 ORTHO05D005615 1.1e-18 96.3 75 60.0
Glyma.04G139900 Glycine max HOM05D004477 ORTHO05D005615 1.1e-18 96.3 70 64.3
MSTRG.2896 Avicennia marina HOM05D004477 ORTHO05D005615 1.5e-18 95.9 75 58.7
ClCG01G007690 Citrullus lanatus HOM05D004477 ORTHO05D005615 1.9e-18 95.5 75 57.3
MELO3C005127.2 Cucumis melo HOM05D004477 ORTHO05D005615 1.9e-18 95.5 75 57.3
Cc06_g06430 Coffea canephora HOM05D004477 ORTHO05D005615 2.5e-18 95.1 75 57.3
MD05G1030400 Malus domestica HOM05D004477 ORTHO05D005615 2.5e-18 95.1 70 62.9
Nn7g36505 Nelumbo nucifera HOM05D004477 ORTHO05D005615 2.5e-18 95.1 75 60.0
Oeu049664.1 Olea europaea HOM05D004477 ORTHO05D005615 2.5e-18 95.1 75 57.3
Prupe.2G030500 Prunus persica HOM05D004477 ORTHO05D005615 2.5e-18 95.1 75 60.0
arahy.Tifrunner.gnm1.ann1.5IKX6D Arachis hypogaea HOM05D004477 ORTHO05D005615 4.2e-18 94.4 75 60.0
arahy.Tifrunner.gnm1.ann1.8LX4B2 Arachis hypogaea HOM05D004477 ORTHO05D005615 4.2e-18 94.4 75 60.0
arahy.Tifrunner.gnm1.ann1.T70L3V Arachis hypogaea HOM05D004477 ORTHO05D005615 4.2e-18 94.4 75 60.0
Dinv32044 Davidia involucrata HOM05D004477 ORTHO05D005615 4.2e-18 94.4 74 58.1
Glyma.11G152600 Glycine max HOM05D004477 ORTHO05D005615 4.2e-18 94.4 70 62.9
Lalb_Chr20g0109051 Lupinus albus HOM05D004477 ORTHO05D005615 4.2e-18 94.4 70 62.9
VMungo1080G0371 Vigna mungo HOM05D004477 ORTHO05D005615 4.2e-18 94.4 70 62.9
Cpa.g.sc51.97 Carica papaya HOM05D004477 ORTHO05D005615 5.5e-18 94.0 74 60.8
CsaV3_5G024730 Cucumis sativus L. HOM05D004477 ORTHO05D005615 5.5e-18 94.0 75 56.0
MD10G1031800 Malus domestica HOM05D004477 ORTHO05D005615 5.5e-18 94.0 70 61.4
arahy.Tifrunner.gnm1.ann1.95EFUZ Arachis hypogaea HOM05D004477 ORTHO05D005615 7.2e-18 93.6 70 62.9
Potri.003G201100 Populus trichocarpa HOM05D004477 ORTHO05D005615 7.2e-18 93.6 75 57.3
Prupe.8G084800 Prunus persica HOM05D004477 ORTHO05D005615 7.2e-18 93.6 75 58.7
PGR031G2712 Punica granatum HOM05D004477 ORTHO05D005615 7.2e-18 93.6 75 56.0
Duzib128G1167 Durio zibethinus HOM05D004477 ORTHO05D005615 9.5e-18 93.2 75 57.3
Gohir.A06G159200 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.2e-17 92.8 75 57.3
Gohir.D12G108500 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.2e-17 92.8 75 57.3
Gorai.010G192500 Gossypium raimondii HOM05D004477 ORTHO05D005615 1.2e-17 92.8 75 57.3
Sabra03G0148700 Salix brachista HOM05D004477 ORTHO05D005615 1.2e-17 92.8 70 60.0
Ca_14282_v3 Cicer arietinum L. HOM05D004477 ORTHO05D005615 1.6e-17 92.4 75 56.0
FAN03G0199 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.6e-17 92.4 75 61.3
Lj3g0011019 Lotus japonicus HOM05D004477 ORTHO05D005615 1.6e-17 92.4 75 56.0
Phvul.005G031000 Phaseolus vulgaris HOM05D004477 ORTHO05D005615 1.6e-17 92.4 70 60.0
Sed0015395 Sechium edule HOM05D004477 ORTHO05D005615 2.1e-17 92.0 75 56.0
Gorai.008G117500 Gossypium raimondii HOM05D004477 ORTHO05D005615 2.8e-17 91.7 75 56.0
Psat4g015320 Pisum sativum HOM05D004477 ORTHO05D005615 2.8e-17 91.7 75 56.0
Psat5g217400 Pisum sativum HOM05D004477 ORTHO05D005615 2.8e-17 91.7 75 54.7
Potri.001G024500 Populus trichocarpa HOM05D004477 ORTHO05D005615 2.8e-17 91.7 75 57.3
GSVIVG01000834001 Vitis vinifera HOM05D004477 ORTHO05D005615 2.8e-17 91.7 75 57.3
DCAR_030970 Daucus carota HOM05D004477 ORTHO05D005615 3.6e-17 91.3 75 56.0
Gohir.D06G165100 Gossypium hirsutum HOM05D004477 ORTHO05D005615 3.6e-17 91.3 75 56.0
SMO118G0432 Selaginella moellendorffii HOM05D004477 ORTHO05D005615 3.6e-17 91.3 70 57.1
SGA_v2.0_scaffold15G07263 Striga asiatica HOM05D004477 ORTHO05D005615 3.6e-17 91.3 75 56.0
HPP92_017907 Vanilla planifolia HOM05D004477 ORTHO05D005615 3.6e-17 91.3 75 57.3
SalBow7G4685 Salvia bowleyana HOM05D004477 ORTHO05D005615 4.7e-17 90.9 75 56.0
Nitab4.5_0000624g0090 Nicotiana tabacum HOM05D004477 ORTHO05D005615 6.1e-17 90.5 75 54.7
CANSAT80G2023 Cannabis sativa HOM05D004477 ORTHO05D005615 8.0e-17 90.1 70 60.0
Ciclev10032276m.g Citrus clementina HOM05D004477 ORTHO05D005615 8.0e-17 90.1 75 56.0
Peaxi162Scf00211g01210 Petunia axillaris HOM05D004477 ORTHO05D005615 8.0e-17 90.1 75 54.7
QL04p014055 Quercus lobata HOM05D004477 ORTHO05D005615 8.0e-17 90.1 75 54.7
Sed0014614 Sechium edule HOM05D004477 ORTHO05D005615 8.0e-17 90.1 75 54.7
Thecc.10G006900 Theobroma cacao HOM05D004477 ORTHO05D005615 8.0e-17 90.1 75 57.3
TWI15G0640 Tripterygium wilfordii HOM05D004477 ORTHO05D005615 8.0e-17 90.1 75 54.7
Medtr3g019370 Medicago truncatula HOM05D004477 ORTHO05D005615 1.0e-16 89.7 75 53.3
Os08g0155000 Oryza sativa ssp. japonica HOM05D004477 ORTHO05D005615 1.0e-16 89.7 75 56.0
Hund13333 Selenicereus undatus HOM05D004477 ORTHO05D005615 1.8e-16 89.0 75 54.7
CDE05G2398 Ceratophyllum demersum HOM05D004477 ORTHO05D005615 2.3e-16 88.6 75 53.3
Mapoly0031s0129 Marchantia polymorpha HOM05D004477 ORTHO05D005615 2.3e-16 88.6 75 52.0
ATR0307G081 Amborella trichopoda HOM05D004477 ORTHO05D005615 5.2e-16 87.4 75 52.0
HanXRQChr15g0469031 Helianthus annuus HOM05D004477 ORTHO05D005615 5.2e-16 87.4 75 53.3
TAR623G1431 Trochodendron aralioides HOM05D004477 ORTHO05D005615 5.2e-16 87.4 75 53.3
TAR633G1412 Trochodendron aralioides HOM05D004477 ORTHO05D005615 5.2e-16 87.4 75 53.3
Aa31LG2G960 Aethionema arabicum HOM05D004477 ORTHO05D005615 6.8e-16 87.0 69 58.0
Ah.03g137500 Amaranthus hybridus HOM05D004477 ORTHO05D005615 6.8e-16 87.0 75 54.7
CiPaw.11G047300 Carya illinoinensis HOM05D004477 ORTHO05D005615 8.9e-16 86.7 75 52.0
TAR130G0001 Trochodendron aralioides HOM05D004477 ORTHO05D005615 8.9e-16 86.7 70 55.7
AL2G11360 Arabidopsis lyrata HOM05D004477 ORTHO05D005615 1.2e-15 86.3 72 55.6
EL10Ac2g02848 Beta vulgaris HOM05D004477 ORTHO05D005615 1.2e-15 86.3 70 55.7
PSO017G0587 Papaver somniferum HOM05D004477 ORTHO05D005615 1.2e-15 86.3 75 52.0
PSO478G1616 Papaver somniferum HOM05D004477 ORTHO05D005615 1.2e-15 86.3 75 52.0
Peaxi162Scf01810g00112 Petunia axillaris HOM05D004477 ORTHO05D005615 1.2e-15 86.3 75 52.0
Psat4g000640 Pisum sativum HOM05D004477 ORTHO05D005615 1.2e-15 86.3 75 52.0
THA.LOC104800270 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 1.2e-15 86.3 69 58.0
Nitab4.5_0001311g0150 Nicotiana tabacum HOM05D004477 ORTHO05D005615 1.5e-15 85.9 75 52.0
AT1G63780 Arabidopsis thaliana HOM05D004477 ORTHO05D005615 2.6e-15 85.1 72 54.2
CARHR047410 Cardamine hirsuta HOM05D004477 ORTHO05D005615 2.6e-15 85.1 69 56.5
Zm00001eb226560 Zea mays HOM05D004477 ORTHO05D005615 2.6e-15 85.1 75 52.0
Migut.H00453 Erythranthe guttata HOM05D004477 ORTHO05D005615 3.4e-15 84.7 75 52.0
Lsat_1_v5_gn_5_69441 Lactuca sativa HOM05D004477 ORTHO05D005615 3.4e-15 84.7 75 52.0
Sc10g0004300 Simmondsia chinensis HOM05D004477 ORTHO05D005615 3.4e-15 84.7 74 54.1
Solyc01g007250.4 Solanum lycopersicum HOM05D004477 ORTHO05D005615 3.4e-15 84.7 75 50.7
Solyc11g065980.3 Solanum lycopersicum HOM05D004477 ORTHO05D005615 3.4e-15 84.7 75 50.7
Sopen01g003240 Solanum pennellii HOM05D004477 ORTHO05D005615 3.4e-15 84.7 75 50.7
Sopen11g025700 Solanum pennellii HOM05D004477 ORTHO05D005615 3.4e-15 84.7 75 50.7
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 4.4e-15 84.3 68 54.4
CAN.G574.29 Capsicum annuum HOM05D004477 ORTHO05D005615 5.7e-15 84.0 69 55.1
PGSC0003DMG400016389 Solanum tuberosum HOM05D004477 ORTHO05D005615 5.7e-15 84.0 70 52.9
Carub.0002s0106 Capsella rubella HOM05D004477 ORTHO05D005615 7.5e-15 83.6 72 54.2
AUR62026831 Chenopodium quinoa HOM05D004477 ORTHO05D005615 7.5e-15 83.6 70 55.7
AUR62037222 Chenopodium quinoa HOM05D004477 ORTHO05D005615 7.5e-15 83.6 70 55.7
THA.LOC104824184 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 9.8e-15 83.2 68 57.4
COL.COLO4_25826 Corchorus olitorius HOM05D004477 ORTHO05D005615 1.7e-14 82.4 75 50.7
Pp3c25_4340 Physcomitrium patens HOM05D004477 ORTHO05D005615 1.7e-14 82.4 75 50.7
Pp3c25_4350 Physcomitrium patens HOM05D004477 ORTHO05D005615 1.7e-14 82.4 75 50.7
Cfa019303 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.2e-14 82.0 75 48.0
Cfa019574 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.9e-14 81.6 75 48.0
Haze_09336 Corylus avellana HOM05D004477 ORTHO05D005615 2.9e-14 81.6 75 48.0
Aqoxy7G00557 Aquilegia oxysepala HOM05D004477 ORTHO05D005615 6.3e-14 80.5 75 49.3
ECA233G2007 Erigeron canadensis HOM05D004477 ORTHO05D005615 1.1e-13 79.7 75 50.7
CBR_g37218 Chara braunii HOM05D004477 ORTHO05D005615 1.8e-13 79.0 70 48.6
Haze_07686 Corylus avellana HOM05D004477 ORTHO05D005615 3.2e-13 78.2 75 46.7
Cre10.g454100 Chlamydomonas reinhardtii HOM05D004477 ORTHO05D005615 1.2e-12 76.3 79 44.3
MCO12G196 Micromonas commoda HOM05D004477 ORTHO05D005615 1.7e-11 72.4 69 49.3
AagrBONN_evm.TU.Sc2ySwM_228.4108 Anthoceros agrestis HOM05D004477 ORTHO05D005615 2.3e-11 72.0 69 46.4
Thhalv10023618m.g Eutrema salsugineum HOM05D004477 ORTHO05D005615 2.9e-11 71.6 69 49.3
Sp2g00900 Schrenkiella parvula HOM05D004477 ORTHO05D005615 2.9e-11 71.6 69 47.8
BcaB07g31550 Brassica carinata HOM05D004477 ORTHO05D005615 6.6e-11 70.5 69 47.8
BcaB07g31410 Brassica carinata HOM05D004477 ORTHO05D005615 3.3e-10 68.2 69 46.4
BcaC04g22503 Brassica carinata HOM05D004477 ORTHO05D005615 3.3e-10 68.2 69 46.4
A09p15310 Brassica napus HOM05D004477 ORTHO05D005615 3.3e-10 68.2 69 46.4
C09p18580 Brassica napus HOM05D004477 ORTHO05D005615 3.3e-10 68.2 69 46.4
BolC9t54754H Brassica oleracea HOM05D004477 ORTHO05D005615 3.3e-10 68.2 69 46.4
BraA09t37176Z Brassica rapa HOM05D004477 ORTHO05D005615 3.3e-10 68.2 69 46.4
Nitab4.5_0006654g0020 Nicotiana tabacum HOM05D004477 ORTHO05D005615 3.3e-10 68.2 65 49.2
PRCOL_00000378 Prasinoderma coloniale HOM05D004477 ORTHO05D005615 5.6e-10 67.4 69 47.8
SHI14075 Sapria himalayana HOM05D004477 ORTHO05D005615 3.1e-08 61.6 56 51.8
Haze_26453 Corylus avellana HOM05D004477 ORTHO05D005615 8.9e-08 60.1 77 40.3


User provided reference genes

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