Gene: Solyc11g065980.3

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc11g065980.3
Transcript Identifier Solyc11g065980.3.1
Gene Type Coding gene
Location SL4.0ch11 : 49642848-49646420 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D004477
#Genes/#Species 161/97
Phylogenetic origin

ID ORTHO05D005615
#Genes/#Species 155/97
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Solyc11g065980.3.1
uniprot A0A3Q7IZA5
gene_id Solyc11g065980

Descriptions

Short descriptions
Ortholog descriptions

Description U3 small nucleolar ribonucleoprotein imp4 (BRIX domain-containing protein) (AHRD V3.3 *** A0A166XUR7_9PEZI)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006364	IBA IEA	GOA Database	rRNA processing
GO:0006364	IEA	InterPro	rRNA processing

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0019843	IEA	GOA Database	rRNA binding
GO:0019843	IEA	InterPro	rRNA binding
GO:0042134	IEA	GOA Database	rRNA primary transcript binding
GO:0042134	IEA	InterPro	rRNA primary transcript binding
GO:0030515	IBA	GOA Database	snoRNA binding
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT1G63780

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0034457	IBA	GOA Database	Mpp10 complex
GO:0032040	IBA	GOA Database	small-subunit processome
GO:0005730	IBA	GOA Database	nucleolus
GO:0015030	ISO	PLAZA Integrative Orthology	Cajal body	AT1G63780
GO:0016363	ISO	PLAZA Integrative Orthology	nuclear matrix	AT1G63780
GO:0005732	ISO	PLAZA Integrative Orthology	sno(s)RNA-containing ribonucleoprotein complex	AT1G63780

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR007109	Brix domain
IPR044281	U3 snoRNP protein/Ribosome production factor 1

Mapman id	Description
17.1.3.2.1.1.2	Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.MPP10 module.assembly factor (Imp4)