Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320851 Rosa chinensis HOM05D004477 ORTHO05D005615 5.2e-57 224.2 114 100.0
FAN06G1855 Fragaria x ananassa HOM05D004477 ORTHO05D005615 6.6e-28 127.5 64 92.2
FvH4_7g02470 Fragaria vesca HOM05D004477 ORTHO05D005615 1.1e-27 126.7 64 92.2
FAN10G1920 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.5e-27 126.3 64 90.6
RcHm_v2.0_Chr1g0320641 Rosa chinensis HOM05D004477 ORTHO05D005615 1.9e-27 125.9 64 92.2
RcHm_v2.0_Chr1g0321121 Rosa chinensis HOM05D004477 ORTHO05D005615 1.9e-27 125.9 78 80.8
RcHm_v2.0_Chr1g0320961 Rosa chinensis HOM05D004477 ORTHO05D005615 3.3e-27 125.2 63 93.7
FAN03G0199 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.6e-26 122.9 63 88.9
RcHm_v2.0_Chr1g0319831 Rosa chinensis HOM05D004477 ORTHO05D005615 2.1e-26 122.5 78 79.5
FAN03G1284 Fragaria x ananassa HOM05D004477 ORTHO05D005615 2.8e-26 122.1 64 89.1
Duzib128G1167 Durio zibethinus HOM05D004477 ORTHO05D005615 1.8e-25 119.4 64 81.2
Ciclev10032276m.g Citrus clementina HOM05D004477 ORTHO05D005615 4.0e-25 118.2 64 82.8
PSO017G0587 Papaver somniferum HOM05D004477 ORTHO05D005615 4.0e-25 118.2 64 81.2
PSO478G1616 Papaver somniferum HOM05D004477 ORTHO05D005615 4.0e-25 118.2 64 81.2
Lj3g0011019 Lotus japonicus HOM05D004477 ORTHO05D005615 6.9e-25 117.5 64 81.2
FvH4_7g04360 Fragaria vesca HOM05D004477 ORTHO05D005615 1.2e-24 116.7 78 74.4
Glyma.11G152600 Glycine max HOM05D004477 ORTHO05D005615 1.2e-24 116.7 64 82.8
Prupe.2G030400 Prunus persica HOM05D004477 ORTHO05D005615 1.2e-24 116.7 64 81.2
vmacro13733 Vaccinium macrocarpon HOM05D004477 ORTHO05D005615 1.2e-24 116.7 64 81.2
Eucgr.G03251 Eucalyptus grandis HOM05D004477 ORTHO05D005615 1.5e-24 116.3 64 78.1
Prupe.2G030500 Prunus persica HOM05D004477 ORTHO05D005615 1.5e-24 116.3 64 81.2
Cpa.g.sc51.97 Carica papaya HOM05D004477 ORTHO05D005615 2.0e-24 115.9 64 81.2
Phvul.005G031000 Phaseolus vulgaris HOM05D004477 ORTHO05D005615 2.0e-24 115.9 64 81.2
Thecc.10G006900 Theobroma cacao HOM05D004477 ORTHO05D005615 2.0e-24 115.9 64 79.7
VMungo1080G0371 Vigna mungo HOM05D004477 ORTHO05D005615 2.0e-24 115.9 64 81.2
Atru.chr3.2871 Acer truncatum HOM05D004477 ORTHO05D005615 2.6e-24 115.5 64 81.2
arahy.Tifrunner.gnm1.ann1.95EFUZ Arachis hypogaea HOM05D004477 ORTHO05D005615 2.6e-24 115.5 65 78.5
Haze_07686 Corylus avellana HOM05D004477 ORTHO05D005615 2.6e-24 115.5 64 78.1
PGR031G2712 Punica granatum HOM05D004477 ORTHO05D005615 2.6e-24 115.5 64 81.2
GSVIVG01000834001 Vitis vinifera HOM05D004477 ORTHO05D005615 2.6e-24 115.5 64 78.1
Gohir.A06G159200 Gossypium hirsutum HOM05D004477 ORTHO05D005615 3.4e-24 115.2 78 69.2
Gohir.D06G165100 Gossypium hirsutum HOM05D004477 ORTHO05D005615 3.4e-24 115.2 78 69.2
Gohir.D12G108500 Gossypium hirsutum HOM05D004477 ORTHO05D005615 3.4e-24 115.2 78 69.2
Gorai.010G192500 Gossypium raimondii HOM05D004477 ORTHO05D005615 3.4e-24 115.2 78 69.2
Lalb_Chr20g0109051 Lupinus albus HOM05D004477 ORTHO05D005615 3.4e-24 115.2 64 79.7
arahy.Tifrunner.gnm1.ann1.5IKX6D Arachis hypogaea HOM05D004477 ORTHO05D005615 4.4e-24 114.8 64 79.7
arahy.Tifrunner.gnm1.ann1.8LX4B2 Arachis hypogaea HOM05D004477 ORTHO05D005615 4.4e-24 114.8 64 79.7
arahy.Tifrunner.gnm1.ann1.T70L3V Arachis hypogaea HOM05D004477 ORTHO05D005615 4.4e-24 114.8 64 79.7
CSS0003663 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 4.4e-24 114.8 64 79.7
CSS0028927 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 4.4e-24 114.8 64 79.7
CiPaw.11G047300 Carya illinoinensis HOM05D004477 ORTHO05D005615 5.8e-24 114.4 64 79.7
Dinv32044 Davidia involucrata HOM05D004477 ORTHO05D005615 5.8e-24 114.4 64 81.2
MD05G1030400 Malus domestica HOM05D004477 ORTHO05D005615 5.8e-24 114.4 78 71.8
MD10G1031800 Malus domestica HOM05D004477 ORTHO05D005615 5.8e-24 114.4 78 71.8
Manes.11G003480 Manihot esculenta HOM05D004477 ORTHO05D005615 5.8e-24 114.4 64 78.1
Potri.001G024500 Populus trichocarpa HOM05D004477 ORTHO05D005615 5.8e-24 114.4 64 78.1
Potri.003G201100 Populus trichocarpa HOM05D004477 ORTHO05D005615 5.8e-24 114.4 64 78.1
QL04p014055 Quercus lobata HOM05D004477 ORTHO05D005615 5.8e-24 114.4 78 70.5
Rhsim07G0063100 Rhododendron simsii HOM05D004477 ORTHO05D005615 7.6e-24 114.0 78 71.8
Ca_14282_v3 Cicer arietinum L. HOM05D004477 ORTHO05D005615 9.9e-24 113.6 64 78.1
Medtr3g019370 Medicago truncatula HOM05D004477 ORTHO05D005615 9.9e-24 113.6 64 78.1
Solyc01g007250.4 Solanum lycopersicum HOM05D004477 ORTHO05D005615 9.9e-24 113.6 64 76.6
Solyc11g065980.3 Solanum lycopersicum HOM05D004477 ORTHO05D005615 9.9e-24 113.6 64 76.6
Sopen01g003240 Solanum pennellii HOM05D004477 ORTHO05D005615 9.9e-24 113.6 64 76.6
Sopen11g025700 Solanum pennellii HOM05D004477 ORTHO05D005615 9.9e-24 113.6 64 76.6
Actinidia06268 Actinidia chinensis HOM05D004477 ORTHO05D005615 1.3e-23 113.2 78 71.8
Sabra03G0148700 Salix brachista HOM05D004477 ORTHO05D005615 1.3e-23 113.2 64 78.1
TWI15G0640 Tripterygium wilfordii HOM05D004477 ORTHO05D005615 1.3e-23 113.2 64 78.1
ClCG01G007690 Citrullus lanatus HOM05D004477 ORTHO05D005615 1.7e-23 112.8 64 78.1
MELO3C005127.2 Cucumis melo HOM05D004477 ORTHO05D005615 1.7e-23 112.8 64 78.1
CsaV3_5G024730 Cucumis sativus L. HOM05D004477 ORTHO05D005615 1.7e-23 112.8 64 78.1
Gorai.008G117500 Gossypium raimondii HOM05D004477 ORTHO05D005615 1.7e-23 112.8 78 67.9
Lj7A582G32 Lonicera japonica HOM05D004477 ORTHO05D005615 1.7e-23 112.8 64 78.1
Hund13333 Selenicereus undatus HOM05D004477 ORTHO05D005615 1.7e-23 112.8 78 69.2
TAR633G1412 Trochodendron aralioides HOM05D004477 ORTHO05D005615 1.7e-23 112.8 78 67.9
AUR62026831 Chenopodium quinoa HOM05D004477 ORTHO05D005615 2.2e-23 112.5 78 69.2
AUR62037222 Chenopodium quinoa HOM05D004477 ORTHO05D005615 2.2e-23 112.5 78 69.2
TAR623G1431 Trochodendron aralioides HOM05D004477 ORTHO05D005615 2.2e-23 112.5 78 67.9
Cfa019303 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.9e-23 112.1 64 76.6
Cfa019574 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.9e-23 112.1 64 76.6
Haze_09336 Corylus avellana HOM05D004477 ORTHO05D005615 2.9e-23 112.1 64 76.6
Zm00001eb226560 Zea mays HOM05D004477 ORTHO05D005615 3.8e-23 111.7 78 65.4
EL10Ac2g02848 Beta vulgaris HOM05D004477 ORTHO05D005615 4.9e-23 111.3 78 67.9
Sed0014614 Sechium edule HOM05D004477 ORTHO05D005615 4.9e-23 111.3 64 75.0
Nitab4.5_0000624g0090 Nicotiana tabacum HOM05D004477 ORTHO05D005615 6.4e-23 110.9 78 67.9
Nitab4.5_0001311g0150 Nicotiana tabacum HOM05D004477 ORTHO05D005615 6.4e-23 110.9 78 67.9
Nitab4.5_0006654g0020 Nicotiana tabacum HOM05D004477 ORTHO05D005615 6.4e-23 110.9 78 67.9
Ah.03g137500 Amaranthus hybridus HOM05D004477 ORTHO05D005615 8.4e-23 110.5 78 66.7
ATR0307G081 Amborella trichopoda HOM05D004477 ORTHO05D005615 1.1e-22 110.2 78 66.7
Glyma.04G139900 Glycine max HOM05D004477 ORTHO05D005615 1.1e-22 110.2 64 76.6
Peaxi162Scf01810g00112 Petunia axillaris HOM05D004477 ORTHO05D005615 1.1e-22 110.2 78 66.7
Sc10g0004300 Simmondsia chinensis HOM05D004477 ORTHO05D005615 1.1e-22 110.2 78 66.7
HPP92_017907 Vanilla planifolia HOM05D004477 ORTHO05D005615 1.1e-22 110.2 78 65.4
Cc06_g06430 Coffea canephora HOM05D004477 ORTHO05D005615 1.4e-22 109.8 78 67.9
Sed0015395 Sechium edule HOM05D004477 ORTHO05D005615 1.9e-22 109.4 64 73.4
SGA_v2.0_scaffold15G07263 Striga asiatica HOM05D004477 ORTHO05D005615 1.9e-22 109.4 78 67.9
COL.COLO4_25826 Corchorus olitorius HOM05D004477 ORTHO05D005615 2.4e-22 109.0 78 65.4
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 2.4e-22 109.0 64 75.0
CANSAT80G2023 Cannabis sativa HOM05D004477 ORTHO05D005615 3.2e-22 108.6 64 75.0
Lsat_1_v5_gn_5_69441 Lactuca sativa HOM05D004477 ORTHO05D005615 3.2e-22 108.6 64 73.4
Aqoxy7G00557 Aquilegia oxysepala HOM05D004477 ORTHO05D005615 4.2e-22 108.2 64 73.4
MSTRG.2896 Avicennia marina HOM05D004477 ORTHO05D005615 4.2e-22 108.2 64 79.7
DCAR_030970 Daucus carota HOM05D004477 ORTHO05D005615 4.2e-22 108.2 78 65.4
Prupe.8G084800 Prunus persica HOM05D004477 ORTHO05D005615 4.2e-22 108.2 78 67.9
ECA233G2007 Erigeron canadensis HOM05D004477 ORTHO05D005615 7.1e-22 107.5 64 71.9
HanXRQChr15g0469031 Helianthus annuus HOM05D004477 ORTHO05D005615 7.1e-22 107.5 64 71.9
SalBow7G4685 Salvia bowleyana HOM05D004477 ORTHO05D005615 7.1e-22 107.5 66 77.3
Peaxi162Scf00211g01210 Petunia axillaris HOM05D004477 ORTHO05D005615 9.3e-22 107.1 64 71.9
Psat4g015320 Pisum sativum HOM05D004477 ORTHO05D005615 1.2e-21 106.7 64 71.9
Os08g0155000 Oryza sativa ssp. japonica HOM05D004477 ORTHO05D005615 1.6e-21 106.3 77 62.3
Prupe.8G084400 Prunus persica HOM05D004477 ORTHO05D005615 1.6e-21 106.3 78 66.7
CAN.G574.29 Capsicum annuum HOM05D004477 ORTHO05D005615 2.1e-21 105.9 78 64.1
CDE05G2398 Ceratophyllum demersum HOM05D004477 ORTHO05D005615 2.1e-21 105.9 78 62.8
BcaC04g22503 Brassica carinata HOM05D004477 ORTHO05D005615 3.5e-21 105.1 65 73.8
A09p15310 Brassica napus HOM05D004477 ORTHO05D005615 3.5e-21 105.1 65 73.8
C09p18580 Brassica napus HOM05D004477 ORTHO05D005615 3.5e-21 105.1 65 73.8
BolC9t54754H Brassica oleracea HOM05D004477 ORTHO05D005615 3.5e-21 105.1 65 73.8
BraA09t37176Z Brassica rapa HOM05D004477 ORTHO05D005615 3.5e-21 105.1 65 73.8
Mapoly0031s0129 Marchantia polymorpha HOM05D004477 ORTHO05D005615 3.5e-21 105.1 78 65.4
Pp3c25_4340 Physcomitrium patens HOM05D004477 ORTHO05D005615 3.5e-21 105.1 78 62.8
Pp3c25_4350 Physcomitrium patens HOM05D004477 ORTHO05D005615 3.5e-21 105.1 78 62.8
THA.LOC104824184 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 3.5e-21 105.1 79 60.8
Psat5g217400 Pisum sativum HOM05D004477 ORTHO05D005615 4.6e-21 104.8 64 71.9
AT1G63780 Arabidopsis thaliana HOM05D004477 ORTHO05D005615 6.0e-21 104.4 65 72.3
BcaB07g31410 Brassica carinata HOM05D004477 ORTHO05D005615 7.8e-21 104.0 65 72.3
AL2G11360 Arabidopsis lyrata HOM05D004477 ORTHO05D005615 1.0e-20 103.6 65 70.8
Cre10.g454100 Chlamydomonas reinhardtii HOM05D004477 ORTHO05D005615 2.3e-20 102.4 64 75.0
THA.LOC104800270 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 2.3e-20 102.4 78 59.0
Aa31LG2G960 Aethionema arabicum HOM05D004477 ORTHO05D005615 3.9e-20 101.7 64 67.2
Nn7g36505 Nelumbo nucifera HOM05D004477 ORTHO05D005615 3.9e-20 101.7 64 73.4
Carub.0002s0106 Capsella rubella HOM05D004477 ORTHO05D005615 5.1e-20 101.3 79 60.8
CARHR047410 Cardamine hirsuta HOM05D004477 ORTHO05D005615 5.1e-20 101.3 65 69.2
Thhalv10023618m.g Eutrema salsugineum HOM05D004477 ORTHO05D005615 6.6e-20 100.9 65 70.8
Psat4g000640 Pisum sativum HOM05D004477 ORTHO05D005615 2.5e-19 99.0 64 67.2
Migut.H00453 Erythranthe guttata HOM05D004477 ORTHO05D005615 1.6e-18 96.3 78 59.0
BcaB07g31550 Brassica carinata HOM05D004477 ORTHO05D005615 2.1e-18 95.9 79 57.0
Sp2g00900 Schrenkiella parvula HOM05D004477 ORTHO05D005615 8.1e-18 94.0 79 59.5
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.1e-17 93.6 67 65.7
MCO12G196 Micromonas commoda HOM05D004477 ORTHO05D005615 1.1e-17 93.6 64 62.5
PGSC0003DMG400016389 Solanum tuberosum HOM05D004477 ORTHO05D005615 1.8e-17 92.8 109 46.8
SMO118G0432 Selaginella moellendorffii HOM05D004477 ORTHO05D005615 3.4e-16 88.6 73 64.4
PRCOL_00000378 Prasinoderma coloniale HOM05D004477 ORTHO05D005615 1.3e-15 86.7 65 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4108 Anthoceros agrestis HOM05D004477 ORTHO05D005615 5.4e-14 81.3 78 52.6
SHI14075 Sapria himalayana HOM05D004477 ORTHO05D005615 2.1e-10 69.3 133 34.6
Oeu049664.1 Olea europaea HOM05D004477 ORTHO05D005615 3.1e-09 65.5 35 85.7
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.4e-06 55.8 94 38.3
CBR_g37218 Chara braunii HOM05D004477 ORTHO05D005615 3.2e-06 55.5 36 69.4


User provided reference genes

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