Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320631 Rosa chinensis HOM05D004477 ORTHO05D347681 4.2e-50 201.1 101 100.0
RcHm_v2.0_Chr1g0321121 Rosa chinensis HOM05D004477 ORTHO05D005615 1.3e-11 73.2 35 97.1
RcHm_v2.0_Chr1g0320511 Rosa chinensis HOM05D004477 ORTHO05D345531 2.9e-11 72.0 69 62.3
FvH4_7g02470 Fragaria vesca HOM05D004477 ORTHO05D005615 8.5e-11 70.5 35 91.4
FAN03G1284 Fragaria x ananassa HOM05D004477 ORTHO05D005615 8.5e-11 70.5 35 91.4
FAN06G1855 Fragaria x ananassa HOM05D004477 ORTHO05D005615 8.5e-11 70.5 35 91.4
FAN10G1920 Fragaria x ananassa HOM05D004477 ORTHO05D005615 8.5e-11 70.5 35 91.4
RcHm_v2.0_Chr1g0319831 Rosa chinensis HOM05D004477 ORTHO05D005615 3.2e-10 68.6 36 94.4
FvH4_7g04360 Fragaria vesca HOM05D004477 ORTHO05D005615 9.4e-10 67.0 35 88.6
Prupe.2G030400 Prunus persica HOM05D004477 ORTHO05D005615 2.1e-09 65.9 35 82.9
Sabra03G0148700 Salix brachista HOM05D004477 ORTHO05D005615 3.6e-09 65.1 33 87.9
Potri.001G024500 Populus trichocarpa HOM05D004477 ORTHO05D005615 1.0e-08 63.5 33 84.8
Potri.003G201100 Populus trichocarpa HOM05D004477 ORTHO05D005615 1.0e-08 63.5 33 84.8
Prupe.2G030500 Prunus persica HOM05D004477 ORTHO05D005615 1.0e-08 63.5 33 84.8
Prupe.8G084800 Prunus persica HOM05D004477 ORTHO05D005615 1.0e-08 63.5 33 84.8
MD05G1030400 Malus domestica HOM05D004477 ORTHO05D005615 1.8e-08 62.8 35 74.3
MD10G1031800 Malus domestica HOM05D004477 ORTHO05D005615 1.8e-08 62.8 35 74.3
ATR0307G081 Amborella trichopoda HOM05D004477 ORTHO05D005615 2.3e-08 62.4 33 81.8
Sc10g0004300 Simmondsia chinensis HOM05D004477 ORTHO05D005615 3.0e-08 62.0 33 81.8
Ah.03g137500 Amaranthus hybridus HOM05D004477 ORTHO05D005615 5.2e-08 61.2 33 78.8
EL10Ac2g02848 Beta vulgaris HOM05D004477 ORTHO05D005615 5.2e-08 61.2 33 78.8
AUR62026831 Chenopodium quinoa HOM05D004477 ORTHO05D005615 5.2e-08 61.2 33 78.8
AUR62037222 Chenopodium quinoa HOM05D004477 ORTHO05D005615 5.2e-08 61.2 33 78.8
Prupe.8G084400 Prunus persica HOM05D004477 ORTHO05D005615 5.2e-08 61.2 33 81.8
Carub.0002s0106 Capsella rubella HOM05D004477 ORTHO05D005615 6.7e-08 60.8 33 75.8
CDE05G2398 Ceratophyllum demersum HOM05D004477 ORTHO05D005615 6.7e-08 60.8 33 75.8
Nitab4.5_0001311g0150 Nicotiana tabacum HOM05D004477 ORTHO05D005615 6.7e-08 60.8 33 75.8
DCAR_030970 Daucus carota HOM05D004477 ORTHO05D005615 8.8e-08 60.5 33 75.8
Hund13333 Selenicereus undatus HOM05D004477 ORTHO05D005615 8.8e-08 60.5 31 80.6
TWI15G0640 Tripterygium wilfordii HOM05D004477 ORTHO05D005615 8.8e-08 60.5 33 78.8
CiPaw.11G047300 Carya illinoinensis HOM05D004477 ORTHO05D005615 1.1e-07 60.1 33 75.8
Oeu049664.1 Olea europaea HOM05D004477 ORTHO05D005615 1.1e-07 60.1 42 61.9
CANSAT80G2023 Cannabis sativa HOM05D004477 ORTHO05D005615 2.0e-07 59.3 35 71.4
Ciclev10032276m.g Citrus clementina HOM05D004477 ORTHO05D005615 2.0e-07 59.3 33 75.8
Eucgr.G03251 Eucalyptus grandis HOM05D004477 ORTHO05D005615 2.0e-07 59.3 33 75.8
SGA_v2.0_scaffold15G07263 Striga asiatica HOM05D004477 ORTHO05D005615 2.0e-07 59.3 33 72.7
HPP92_017907 Vanilla planifolia HOM05D004477 ORTHO05D005615 2.0e-07 59.3 35 68.6
Atru.chr3.2871 Acer truncatum HOM05D004477 ORTHO05D005615 2.6e-07 58.9 33 72.7
Cfa019303 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.6e-07 58.9 33 72.7
Cfa019574 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.6e-07 58.9 33 72.7
Haze_09336 Corylus avellana HOM05D004477 ORTHO05D005615 2.6e-07 58.9 33 72.7
THA.LOC104824184 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 2.6e-07 58.9 33 78.8
AT1G63780 Arabidopsis thaliana HOM05D004477 ORTHO05D005615 3.3e-07 58.5 33 72.7
Cc06_g06430 Coffea canephora HOM05D004477 ORTHO05D005615 3.3e-07 58.5 33 75.8
Haze_07686 Corylus avellana HOM05D004477 ORTHO05D005615 3.3e-07 58.5 33 69.7
Nitab4.5_0000624g0090 Nicotiana tabacum HOM05D004477 ORTHO05D005615 3.3e-07 58.5 33 72.7
Nitab4.5_0006654g0020 Nicotiana tabacum HOM05D004477 ORTHO05D005615 3.3e-07 58.5 33 72.7
Peaxi162Scf01810g00112 Petunia axillaris HOM05D004477 ORTHO05D005615 3.3e-07 58.5 33 72.7
Psat5g217400 Pisum sativum HOM05D004477 ORTHO05D005615 3.3e-07 58.5 33 75.8
AL2G11360 Arabidopsis lyrata HOM05D004477 ORTHO05D005615 4.4e-07 58.2 33 72.7
arahy.Tifrunner.gnm1.ann1.5IKX6D Arachis hypogaea HOM05D004477 ORTHO05D005615 4.4e-07 58.2 33 75.8
CARHR047410 Cardamine hirsuta HOM05D004477 ORTHO05D005615 4.4e-07 58.2 33 72.7
Migut.H00453 Erythranthe guttata HOM05D004477 ORTHO05D005615 4.4e-07 58.2 33 69.7
Manes.11G003480 Manihot esculenta HOM05D004477 ORTHO05D005615 4.4e-07 58.2 33 72.7
Rhsim07G0063100 Rhododendron simsii HOM05D004477 ORTHO05D005615 4.4e-07 58.2 33 69.7
Sed0015395 Sechium edule HOM05D004477 ORTHO05D005615 4.4e-07 58.2 33 72.7
THA.LOC104800270 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 5.7e-07 57.8 33 75.8
VMungo1080G0371 Vigna mungo HOM05D004477 ORTHO05D005615 5.7e-07 57.8 33 75.8
GSVIVG01000834001 Vitis vinifera HOM05D004477 ORTHO05D005615 5.7e-07 57.8 33 72.7
MSTRG.2896 Avicennia marina HOM05D004477 ORTHO05D005615 7.5e-07 57.4 33 69.7
Glyma.11G152600 Glycine max HOM05D004477 ORTHO05D005615 7.5e-07 57.4 33 75.8
Phvul.005G031000 Phaseolus vulgaris HOM05D004477 ORTHO05D005615 7.5e-07 57.4 33 75.8
Sed0014614 Sechium edule HOM05D004477 ORTHO05D005615 7.5e-07 57.4 33 72.7
Actinidia06268 Actinidia chinensis HOM05D004477 ORTHO05D005615 9.7e-07 57.0 33 69.7
COL.COLO4_25826 Corchorus olitorius HOM05D004477 ORTHO05D005615 9.7e-07 57.0 32 68.8
Glyma.04G139900 Glycine max HOM05D004477 ORTHO05D005615 9.7e-07 57.0 33 72.7
Aa31LG2G960 Aethionema arabicum HOM05D004477 ORTHO05D005615 1.3e-06 56.6 31 71.0
BcaC04g22503 Brassica carinata HOM05D004477 ORTHO05D005615 1.3e-06 56.6 33 69.7
A09p15310 Brassica napus HOM05D004477 ORTHO05D005615 1.3e-06 56.6 33 69.7
C09p18580 Brassica napus HOM05D004477 ORTHO05D005615 1.3e-06 56.6 33 69.7
BolC9t54754H Brassica oleracea HOM05D004477 ORTHO05D005615 1.3e-06 56.6 33 69.7
BraA09t37176Z Brassica rapa HOM05D004477 ORTHO05D005615 1.3e-06 56.6 33 69.7
ClCG01G007690 Citrullus lanatus HOM05D004477 ORTHO05D005615 1.3e-06 56.6 31 74.2
MELO3C005127.2 Cucumis melo HOM05D004477 ORTHO05D005615 1.3e-06 56.6 31 74.2
CsaV3_5G024730 Cucumis sativus L. HOM05D004477 ORTHO05D005615 1.3e-06 56.6 31 74.2
Thhalv10023618m.g Eutrema salsugineum HOM05D004477 ORTHO05D005615 1.3e-06 56.6 33 72.7
Gohir.A06G159200 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.7e-06 56.2 32 68.8
Gohir.D06G165100 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.7e-06 56.2 32 68.8
Gohir.D12G108500 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.7e-06 56.2 32 68.8
Gorai.008G117500 Gossypium raimondii HOM05D004477 ORTHO05D005615 1.7e-06 56.2 32 68.8
Gorai.010G192500 Gossypium raimondii HOM05D004477 ORTHO05D005615 1.7e-06 56.2 32 68.8
QL04p014055 Quercus lobata HOM05D004477 ORTHO05D005615 1.7e-06 56.2 32 68.8
arahy.Tifrunner.gnm1.ann1.8LX4B2 Arachis hypogaea HOM05D004477 ORTHO05D005615 2.2e-06 55.8 33 72.7
arahy.Tifrunner.gnm1.ann1.95EFUZ Arachis hypogaea HOM05D004477 ORTHO05D005615 2.2e-06 55.8 33 72.7
arahy.Tifrunner.gnm1.ann1.T70L3V Arachis hypogaea HOM05D004477 ORTHO05D005615 2.2e-06 55.8 33 72.7
CSS0003663 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 2.2e-06 55.8 33 69.7
CSS0028927 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 2.2e-06 55.8 33 69.7
Cpa.g.sc51.97 Carica papaya HOM05D004477 ORTHO05D005615 2.2e-06 55.8 33 69.7
Lalb_Chr20g0109051 Lupinus albus HOM05D004477 ORTHO05D005615 2.2e-06 55.8 33 72.7
SalBow7G4685 Salvia bowleyana HOM05D004477 ORTHO05D005615 2.2e-06 55.8 35 68.6
Thecc.10G006900 Theobroma cacao HOM05D004477 ORTHO05D005615 2.2e-06 55.8 31 74.2
Dinv32044 Davidia involucrata HOM05D004477 ORTHO05D005615 2.8e-06 55.5 33 66.7
Lj3g0011019 Lotus japonicus HOM05D004477 ORTHO05D005615 2.8e-06 55.5 33 69.7
Sp2g00900 Schrenkiella parvula HOM05D004477 ORTHO05D005615 2.8e-06 55.5 33 69.7
BcaB07g31410 Brassica carinata HOM05D004477 ORTHO05D005615 3.7e-06 55.1 33 66.7
CAN.G574.29 Capsicum annuum HOM05D004477 ORTHO05D005615 3.7e-06 55.1 33 66.7
Os08g0155000 Oryza sativa ssp. japonica HOM05D004477 ORTHO05D005615 3.7e-06 55.1 31 80.6
HanXRQChr15g0469031 Helianthus annuus HOM05D004477 ORTHO05D005615 4.8e-06 54.7 33 72.7
PSO017G0587 Papaver somniferum HOM05D004477 ORTHO05D005615 4.8e-06 54.7 33 72.7
PSO478G1616 Papaver somniferum HOM05D004477 ORTHO05D005615 4.8e-06 54.7 33 72.7
Peaxi162Scf00211g01210 Petunia axillaris HOM05D004477 ORTHO05D005615 4.8e-06 54.7 33 69.7
Psat4g015320 Pisum sativum HOM05D004477 ORTHO05D005615 4.8e-06 54.7 30 76.7
Solyc01g007250.4 Solanum lycopersicum HOM05D004477 ORTHO05D005615 4.8e-06 54.7 33 69.7
Solyc11g065980.3 Solanum lycopersicum HOM05D004477 ORTHO05D005615 4.8e-06 54.7 33 69.7
Sopen01g003240 Solanum pennellii HOM05D004477 ORTHO05D005615 4.8e-06 54.7 33 69.7
Sopen11g025700 Solanum pennellii HOM05D004477 ORTHO05D005615 4.8e-06 54.7 33 69.7
Ca_14282_v3 Cicer arietinum L. HOM05D004477 ORTHO05D005615 6.3e-06 54.3 33 69.7
Duzib128G1167 Durio zibethinus HOM05D004477 ORTHO05D005615 6.3e-06 54.3 31 67.7


User provided reference genes

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