Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320091 Rosa chinensis HOM05D003704 ORTHO05D017707 5.7e-49 197.2 95 100.0
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 4.5e-30 134.4 82 79.3
RcHm_v2.0_Chr1g0320051 Rosa chinensis HOM05D003704 ORTHO05D005892 7.7e-30 133.7 81 80.2
RcHm_v2.0_Chr1g0320421 Rosa chinensis HOM05D003704 ORTHO05D017707 4.2e-28 127.9 69 87.0
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 4.7e-27 124.4 82 73.2
FAN10G3548 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.4e-26 122.9 82 73.2
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 6.7e-26 120.6 65 84.6
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 4.4e-25 117.9 65 86.2
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 7.0e-23 110.5 68 75.0
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 5.0e-21 104.4 68 76.5
Cpa.g.sc2782.1 Carica papaya HOM05D003704 ORTHO05D005892 1.5e-20 102.8 86 59.3
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 1.9e-20 102.4 67 73.1
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 1.9e-20 102.4 67 74.6
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 4.2e-20 101.3 70 64.3
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 5.5e-20 100.9 65 73.8
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 7.2e-20 100.5 66 71.2
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 7.2e-20 100.5 66 71.2
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 7.2e-20 100.5 67 73.1
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 9.4e-20 100.1 67 73.1
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 9.4e-20 100.1 68 69.1
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.6e-19 99.4 68 73.5
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 2.1e-19 99.0 66 69.7
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 4.7e-19 97.8 65 75.4
TAR628G1325 Trochodendron aralioides HOM05D003704 ORTHO05D005892 8.0e-19 97.1 67 67.2
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 3.0e-18 95.1 69 65.2
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 5.2e-18 94.4 71 66.2
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 6.8e-18 94.0 69 63.8
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 6.8e-18 94.0 69 63.8
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 8.8e-18 93.6 68 69.1
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 8.8e-18 93.6 69 63.8
MD02G1293500 Malus domestica HOM05D003704 ORTHO05D005892 8.8e-18 93.6 65 72.3
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 8.8e-18 93.6 70 65.7
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 1.5e-17 92.8 69 62.3
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 3.4e-17 91.7 69 60.9
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 3.4e-17 91.7 75 62.7
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 4.4e-17 91.3 69 62.3
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 7.5e-17 90.5 70 64.3
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 9.8e-17 90.1 79 58.2
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 1.3e-16 89.7 69 60.9
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 1.3e-16 89.7 102 48.0
CDE02G2053 Ceratophyllum demersum HOM05D003704 ORTHO05D005892 1.7e-16 89.4 69 58.0
Gohir.A08G225100 Gossypium hirsutum HOM05D003704 ORTHO05D005892 1.7e-16 89.4 72 66.7
Gohir.D08G245550 Gossypium hirsutum HOM05D003704 ORTHO05D005892 1.7e-16 89.4 72 66.7
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 1.7e-16 89.4 72 66.7
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 1.7e-16 89.4 84 54.8
Potri.003G201200 Populus trichocarpa HOM05D003704 ORTHO05D005892 2.8e-16 88.6 92 55.4
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 4.8e-16 87.8 70 62.9
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 6.3e-16 87.4 75 60.0
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 6.3e-16 87.4 83 57.8
SGA_v2.0_scaffold5G02930 Striga asiatica HOM05D003704 ORTHO05D005892 6.3e-16 87.4 68 61.8
Sabra03G0148800 Salix brachista HOM05D003704 ORTHO05D005892 1.4e-15 86.3 85 57.6
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 1.8e-15 85.9 78 57.7
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 1.8e-15 85.9 90 53.3
Lsat_1_v5_gn_4_29820 Lactuca sativa HOM05D003704 ORTHO05D005892 2.4e-15 85.5 70 60.0
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 2.4e-15 85.5 67 62.7
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 3.1e-15 85.1 68 61.8
GSVIVG01000835001 Vitis vinifera HOM05D003704 ORTHO05D005892 3.1e-15 85.1 66 65.2
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 4.1e-15 84.7 70 62.9
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 4.1e-15 84.7 78 56.4
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 7.0e-15 84.0 66 62.1
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 7.0e-15 84.0 68 60.3
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 9.1e-15 83.6 83 50.6
GSVIVG01029933001 Vitis vinifera HOM05D003704 ORTHO05D005892 9.1e-15 83.6 70 62.9
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 1.2e-14 83.2 75 57.3
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 2.0e-14 82.4 70 57.1
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 2.0e-14 82.4 81 54.3
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 2.0e-14 82.4 81 54.3
COL.COLO4_37421 Corchorus olitorius HOM05D003704 ORTHO05D005892 2.7e-14 82.0 68 67.6
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 3.5e-14 81.6 83 50.6
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 3.5e-14 81.6 83 50.6
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 3.5e-14 81.6 109 44.0
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 7.7e-14 80.5 82 53.7
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 7.7e-14 80.5 82 53.7
ATR0564G498 Amborella trichopoda HOM05D003704 ORTHO05D005892 2.3e-13 79.0 66 59.1
HanXRQChr17g0564051 Helianthus annuus HOM05D003704 ORTHO05D005892 2.3e-13 79.0 70 55.7
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 2.3e-13 79.0 66 60.6
HPP92_001561 Vanilla planifolia HOM05D003704 ORTHO05D005892 5.0e-13 77.8 71 56.3
Cc02_g29160 Coffea canephora HOM05D003704 ORTHO05D005892 6.5e-13 77.4 79 48.1
DCAR_003239 Daucus carota HOM05D003704 ORTHO05D005892 8.6e-13 77.0 70 55.7
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 8.6e-13 77.0 67 61.2
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 2.5e-12 75.5 83 49.4
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 5.5e-12 74.3 72 59.7
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 5.5e-12 74.3 79 54.4
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 7.2e-12 73.9 68 58.8
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 9.5e-12 73.6 75 56.0
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 2.1e-11 72.4 70 55.7
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 2.1e-11 72.4 67 52.2
Psat6g100680 Pisum sativum HOM05D003704 ORTHO05D005892 2.1e-11 72.4 65 55.4
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 2.8e-11 72.0 68 55.9
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 6.1e-11 70.9 68 57.4
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 6.1e-11 70.9 67 50.7
Aqoxy1G04161 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 1.4e-10 69.7 67 53.7
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.4e-10 69.7 71 52.1
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 2.3e-10 68.9 70 57.1
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 3.0e-10 68.6 63 52.4
A05p07400 Brassica napus HOM05D003704 ORTHO05D005892 3.0e-10 68.6 69 53.6
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 3.0e-10 68.6 69 53.6
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 3.0e-10 68.6 66 53.0
Psat4g010680 Pisum sativum HOM05D003704 ORTHO05D005892 3.0e-10 68.6 65 52.3
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 1.2e-09 66.6 71 52.1
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 1.2e-09 66.6 108 38.0
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 2.0e-09 65.9 69 52.2
BcaC02g07445 Brassica carinata HOM05D003704 ORTHO05D005892 5.7e-09 64.3 69 52.2
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 5.7e-09 64.3 69 52.2
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 1.3e-08 63.2 69 50.7
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 2.2e-08 62.4 69 49.3
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 2.2e-08 62.4 69 49.3
CDE06G2138 Ceratophyllum demersum HOM05D003704 ORTHO05D028681 5.9e-06 54.3 34 64.7
PSO781G0329 Papaver somniferum HOM05D003704 ORTHO05D005892 5.9e-06 54.3 62 43.5


User provided reference genes

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