Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 8.7e-102 373.6 188 100.0
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 8.7e-102 373.6 188 100.0
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 2.5e-101 372.1 188 99.5
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 3.3e-101 371.7 188 99.5
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 3.3e-101 371.7 188 99.5
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 2.0e-82 309.3 188 83.5
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.2e-81 305.8 187 82.4
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.2e-79 300.1 196 79.6
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.8e-78 296.2 196 79.1
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.3e-76 290.0 210 74.3
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 7.5e-53 211.1 192 58.9
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 4.9e-52 208.4 195 58.5
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 4.1e-51 205.3 194 59.3
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 1.6e-50 203.4 197 59.4
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 3.5e-50 202.2 190 56.8
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 5.9e-50 201.4 194 55.7
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 1.0e-49 200.7 193 55.4
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 1.1e-48 197.2 173 61.3
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 2.5e-48 196.1 186 58.6
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 1.6e-47 193.4 185 57.8
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 1.1e-46 190.7 196 55.1
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 1.1e-46 190.7 196 55.1
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 4.4e-45 185.3 173 59.0
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 1.7e-44 183.3 195 52.8
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 1.7e-44 183.3 199 53.8
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 3.7e-44 182.2 193 51.8
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 4.1e-43 178.7 191 54.5
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 5.4e-43 178.3 177 58.2
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 7.0e-43 177.9 167 58.1
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 7.0e-43 177.9 185 55.7
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 1.2e-42 177.2 199 52.8
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 6.0e-42 174.9 173 53.8
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 1.7e-41 173.3 187 55.1
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 6.6e-41 171.4 91 92.3
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 4.3e-40 168.7 204 50.0
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 4.3e-40 168.7 179 51.4
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 2.1e-39 166.4 190 50.5
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 3.6e-39 165.6 168 55.4
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 6.2e-39 164.9 189 50.8
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.8e-38 163.3 217 46.5
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 1.8e-38 163.3 181 53.0
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 1.8e-38 163.3 104 79.8
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 3.1e-38 162.5 177 52.5
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 6.8e-38 161.4 191 49.2
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 4.4e-37 158.7 195 48.7
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 5.8e-37 158.3 192 49.5
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 5.8e-37 158.3 144 58.3
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 7.5e-37 157.9 184 52.2
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 2.2e-36 156.4 198 49.5
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 2.9e-36 156.0 193 49.2
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 2.9e-36 156.0 193 49.2
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 2.9e-36 156.0 233 43.3
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 4.9e-36 155.2 169 50.3
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 8.3e-36 154.5 177 53.1
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 3.2e-35 152.5 144 54.2
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 5.4e-35 151.8 193 48.7
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 5.4e-35 151.8 188 48.4
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 7.1e-35 151.4 100 78.0
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 2.1e-34 149.8 176 46.6
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 2.7e-34 149.4 176 47.2
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 2.7e-34 149.4 183 49.7
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 2.7e-34 149.4 173 50.3
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 7.8e-34 147.9 183 49.2
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 7.8e-34 147.9 194 48.5
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 1.0e-33 147.5 185 50.3
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 2.3e-33 146.4 189 49.2
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 3.0e-33 146.0 189 49.2
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 3.9e-33 145.6 181 47.5
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 8.6e-33 144.4 180 47.2
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 8.6e-33 144.4 179 49.2
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 1.1e-32 144.1 187 49.2
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 1.1e-32 144.1 187 49.2
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 1.5e-32 143.7 174 50.6
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 7.3e-32 141.4 169 51.5
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 3.6e-31 139.0 170 48.8
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 6.2e-31 138.3 188 46.3
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.1e-30 137.5 191 45.5
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.4e-30 137.1 143 59.4
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 2.4e-30 136.3 183 46.4
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 4.0e-30 135.6 192 45.8
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 6.8e-30 134.8 182 46.2
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 2.6e-29 132.9 191 45.5
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 4.4e-29 132.1 199 44.2
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 7.6e-29 131.3 198 42.9
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 7.6e-29 131.3 198 45.5
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 4.9e-28 128.6 192 43.8
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 4.9e-28 128.6 185 43.8
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 6.4e-28 128.3 198 42.9
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 2.4e-27 126.3 200 42.5
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 2.4e-27 126.3 199 42.7
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 3.2e-27 125.9 176 46.6
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 1.2e-26 124.0 65 90.8
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 4.6e-26 122.1 190 42.1
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 7.8e-26 121.3 170 43.5
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 1.0e-25 120.9 166 46.4
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 1.7e-25 120.2 195 40.5
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 2.3e-25 119.8 182 44.5
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 1.1e-24 117.5 160 44.4
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 2.5e-24 116.3 140 47.9
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 2.5e-24 116.3 184 42.4
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 3.6e-23 112.5 194 38.7
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 3.6e-23 112.5 174 39.1
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 3.6e-23 112.5 174 39.1
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 6.2e-23 111.7 174 39.7
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 6.2e-23 111.7 147 50.3
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 6.9e-22 108.2 172 43.0
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 1.2e-21 107.5 114 50.0
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 7.6e-21 104.8 189 40.2
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 1.7e-20 103.6 110 49.1
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 3.2e-19 99.4 79 57.0
FvH4_5g27761 Fragaria vesca HOM05D004863 ORTHO05D005802 1.2e-18 97.4 81 69.1
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 1.6e-18 97.1 122 44.3
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 2.1e-18 96.7 142 45.8
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 8.1e-15 84.7 199 35.7
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 1.9e-11 73.6 92 40.2
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 3.5e-10 69.3 97 50.5
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 3.0e-09 66.2 91 51.6
SMO142G0069 Selaginella moellendorffii HOM05D004863 ORTHO05D005802 9.6e-08 61.2 97 38.1
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 1.8e-06 57.0 180 29.4
Mapoly0041s0038 Marchantia polymorpha HOM05D004863 ORTHO05D005802 2.4e-06 56.6 138 34.1
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 5.3e-06 55.5 106 44.3
BcaB01g04995 Brassica carinata HOM05D001331 ORTHO05D001157 9.0e-06 54.7 72 37.5


User provided reference genes

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