Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 1.0e-102 376.7 185 100.0
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 3.3e-101 371.7 185 98.9
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-93 346.7 185 91.9
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-93 346.7 185 91.9
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 3.3e-93 345.1 185 91.4
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 4.3e-93 344.7 185 90.3
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 1.2e-92 343.2 185 91.4
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.6e-92 342.8 185 90.8
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 4.7e-92 341.3 185 90.8
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 1.1e-91 340.1 185 90.3
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 1.4e-91 339.7 185 89.7
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 3.1e-91 338.6 182 90.7
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 1.5e-90 336.3 185 89.7
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 4.4e-90 334.7 185 87.6
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 4.4e-90 334.7 185 87.6
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 4.4e-90 334.7 185 87.6
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 4.4e-90 334.7 185 87.6
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 4.4e-90 334.7 185 87.6
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 4.4e-90 334.7 185 87.6
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 5.8e-90 334.3 185 89.7
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 9.9e-90 333.6 185 89.7
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 2.2e-89 332.4 185 89.2
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 6.4e-89 330.9 185 87.0
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 2.3e-86 322.4 185 87.6
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 6.6e-86 320.9 185 87.0
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-85 319.7 185 86.5
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 4.3e-85 318.2 182 87.4
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 5.6e-85 317.8 185 85.9
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 5.6e-85 317.8 185 85.9
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 5.6e-85 317.8 185 85.9
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 5.6e-85 317.8 185 85.9
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 5.6e-85 317.8 185 85.9
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 2.1e-84 315.8 185 85.4
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 3.6e-84 315.1 185 85.4
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 3.6e-84 315.1 185 85.4
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 3.6e-84 315.1 185 85.4
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.1e-83 313.5 171 88.9
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.1e-83 313.5 171 88.9
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 4.4e-82 308.1 185 82.7
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 1.3e-81 306.6 185 83.2
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 9.3e-80 300.4 184 81.5
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.6e-79 298.1 182 83.0
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.1e-78 294.7 182 82.4
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 7.3e-77 290.8 170 86.5
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.4e-75 286.6 182 79.7
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.4e-75 286.6 182 79.7
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 1.2e-74 283.5 185 79.5
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.8e-73 278.5 182 78.0
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 4.2e-72 275.0 158 84.8
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 7.1e-72 274.2 185 74.6
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 4.6e-71 271.6 170 77.6
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.0e-70 270.4 182 75.8
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 4.3e-69 265.0 185 75.1
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.0e-67 258.5 182 74.2
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 3.4e-66 255.4 185 71.9
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 5.8e-66 254.6 185 72.4
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.0e-62 243.8 182 69.8
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 3.9e-62 241.9 133 87.2
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 1.1e-61 240.4 141 83.7
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.5e-61 240.0 130 89.2
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 3.7e-60 235.3 120 91.7
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 3.7e-60 235.3 120 91.7
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 3.7e-60 235.3 120 91.7
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 8.1e-60 234.2 122 92.6
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 4.0e-59 231.9 118 92.4
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 9.0e-59 230.7 119 91.6
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 7.6e-58 227.6 120 90.8
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.9e-57 225.7 120 91.7
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 8.4e-57 224.2 117 90.6
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.4e-56 223.4 117 90.6
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-56 223.4 120 88.3
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.9e-56 223.0 175 68.6
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 1.6e-55 219.9 120 88.3
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.7e-55 219.2 154 70.8
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 4.6e-55 218.4 186 62.9
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.3e-54 216.1 127 83.5
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 6.7e-54 214.5 120 89.2
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 6.7e-54 214.5 120 89.2
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 4.3e-53 211.8 119 88.2
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 4.3e-53 211.8 120 85.8
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 2.1e-52 209.5 124 84.7
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 4.8e-52 208.4 194 54.6
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.8e-51 206.5 128 79.7
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.0e-49 200.7 113 85.0
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 3.8e-49 198.7 187 61.5
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.1e-47 193.0 106 87.7
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 3.6e-47 192.2 110 82.7
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.0e-46 189.1 98 92.9
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 6.7e-46 188.0 178 47.8
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 8.7e-46 187.6 148 68.2
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 8.7e-46 187.6 185 56.2
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.5e-45 186.8 127 74.0
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 3.3e-45 185.7 97 91.8
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 3.3e-45 185.7 115 77.4
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 4.3e-45 185.3 119 74.8
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 5.7e-45 184.9 96 91.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 7.4e-45 184.5 123 77.2
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 1.6e-44 183.3 123 78.9
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 2.2e-44 183.0 94 91.5
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 2.8e-44 182.6 184 51.1
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.1e-43 180.6 113 77.0
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 1.4e-43 180.3 120 77.5
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 1.4e-43 180.3 97 87.6
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 2.4e-43 179.5 96 91.7
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 3.1e-43 179.1 112 78.6
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 3.1e-43 179.1 120 78.3
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 5.3e-43 178.3 189 53.4
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 6.9e-43 177.9 95 86.3
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 6.9e-43 177.9 95 86.3
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.2e-42 177.2 98 86.7
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 1.2e-42 177.2 94 92.6
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 3.4e-42 175.6 95 87.4
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.5e-42 175.3 182 54.4
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 4.5e-42 175.3 129 69.0
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 5.9e-42 174.9 94 88.3
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 5.9e-42 174.9 98 86.7
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 5.9e-42 174.9 188 53.2
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.7e-41 173.3 120 73.3
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.2e-41 172.9 95 86.3
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 2.9e-41 172.6 120 74.2
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.1e-40 170.6 186 54.3
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 1.9e-40 169.9 90 86.7
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.2e-40 169.1 92 87.0
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 7.2e-40 167.9 119 68.1
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 7.2e-40 167.9 176 56.2
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 1.2e-39 167.2 103 74.8
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.6e-39 166.8 87 93.1
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 2.7e-39 166.0 121 71.1
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 2.3e-38 162.9 117 70.9
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.0e-38 162.5 131 63.4
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.6e-37 159.5 94 77.7
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.4e-37 157.9 89 84.3
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.1e-35 152.5 88 84.1
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 4.5e-34 148.7 174 47.1
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.9e-32 143.3 102 69.6
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.2e-31 140.6 167 51.5
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 8.8e-30 134.4 81 82.7
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.4e-29 131.3 111 64.9
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.4e-29 131.3 111 64.9
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.4e-29 131.3 111 64.9
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.4e-29 131.3 111 64.9
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.4e-29 131.3 111 64.9
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.7e-28 130.2 70 87.1
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.8e-28 128.6 77 80.5
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.8e-28 128.6 77 80.5
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.8e-28 128.6 77 80.5
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.8e-28 128.6 77 80.5
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.8e-28 128.6 77 80.5
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.4e-27 127.1 125 57.6
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 4.5e-26 122.1 96 65.6
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.6e-23 113.6 64 89.1
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.1e-23 111.7 123 50.4
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 2.3e-22 109.8 61 88.5
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 4.0e-22 109.0 156 44.9
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 5.2e-22 108.6 91 65.9
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.2e-21 107.5 70 70.0
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 2.0e-21 106.7 62 82.3
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 4.4e-21 105.5 82 67.1
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 1.7e-20 103.6 62 85.5
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 2.8e-20 102.8 111 52.3
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 3.7e-20 102.4 62 83.9
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 3.7e-20 102.4 60 78.3
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 6.3e-20 101.7 74 64.9
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 8.2e-20 101.3 62 79.0
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 1.8e-19 100.1 64 82.8
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 4.1e-19 99.0 93 58.1
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.2e-18 97.4 78 62.8
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 1.6e-18 97.1 61 82.0
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 5.9e-18 95.1 60 76.7
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.7e-18 94.7 50 90.0
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.7e-18 94.7 50 90.0
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 1.0e-17 94.4 60 75.0
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 1.7e-17 93.6 55 81.8
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.8e-17 92.4 117 49.6
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 7.2e-16 88.2 52 78.8
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 1.2e-15 87.4 49 87.8
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 8.8e-14 81.3 70 67.1
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 1.4e-11 73.9 49 75.5
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.4e-11 73.2 49 73.5
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 3.1e-11 72.8 49 77.6
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 2.0e-10 70.1 33 97.0
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 2.0e-10 70.1 33 97.0
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 5.0e-09 65.5 36 91.7
FAN07G1499 Fragaria x ananassa HOM05D000806 ORTHO05D007429 6.5e-09 65.1 54 64.8
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 1.5e-08 63.9 32 90.6
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 4.2e-08 62.4 36 75.0


User provided reference genes

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