Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p1877_0036 Quercus lobata HOM05D003501 ORTHO05D004388 3.6e-42 174.5 87 100.0
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 4.6e-21 104.4 54 98.1
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 7.6e-16 87.0 76 60.5
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 2.9e-15 85.1 54 77.8
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 3.8e-15 84.7 76 60.5
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 3.8e-15 84.7 54 75.9
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 6.4e-15 84.0 54 77.8
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.4e-14 82.8 76 59.2
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.9e-14 82.4 54 74.1
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 1.9e-14 82.4 76 56.6
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 2.4e-14 82.0 76 57.9
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 3.2e-14 81.6 54 74.1
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 5.4e-14 80.9 53 73.6
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 5.4e-14 80.9 53 73.6
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 9.2e-14 80.1 54 72.2
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 1.2e-13 79.7 53 73.6
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 1.2e-13 79.7 54 72.2
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 1.2e-13 79.7 54 72.2
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 1.2e-13 79.7 53 71.7
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 1.6e-13 79.3 53 71.7
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.6e-13 79.3 54 70.4
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.6e-13 79.3 53 73.6
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.6e-13 79.3 76 56.6
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 2.1e-13 79.0 53 71.7
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 2.7e-13 78.6 54 70.4
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 3.5e-13 78.2 54 72.2
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.5e-13 78.2 54 70.4
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 3.5e-13 78.2 53 73.6
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 3.5e-13 78.2 54 72.2
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.5e-13 78.2 54 72.2
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.5e-13 78.2 54 72.2
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 3.5e-13 78.2 54 72.2
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 4.6e-13 77.8 54 72.2
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 6.0e-13 77.4 54 70.4
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 6.0e-13 77.4 53 71.7
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 6.0e-13 77.4 53 71.7
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 6.0e-13 77.4 54 66.7
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 7.8e-13 77.0 54 66.7
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 7.8e-13 77.0 54 72.2
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 7.8e-13 77.0 54 72.2
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 1.0e-12 76.6 52 71.2
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.0e-12 76.6 69 59.4
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 1.0e-12 76.6 54 66.7
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 1.0e-12 76.6 54 68.5
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.3e-12 76.3 54 64.8
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 1.3e-12 76.3 53 69.8
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 1.3e-12 76.3 54 72.2
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 1.7e-12 75.9 49 75.5
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.7e-12 75.9 54 70.4
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.7e-12 75.9 54 70.4
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 1.7e-12 75.9 54 70.4
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.7e-12 75.9 54 70.4
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.7e-12 75.9 54 70.4
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 3.0e-12 75.1 54 66.7
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.9e-12 74.7 54 66.7
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 3.9e-12 74.7 52 69.2
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 6.6e-12 73.9 54 64.8
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 6.6e-12 73.9 53 69.8
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 6.6e-12 73.9 53 66.0
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 8.7e-12 73.6 51 68.6
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 8.7e-12 73.6 51 68.6
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 8.7e-12 73.6 76 53.9
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 8.7e-12 73.6 76 53.9
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 1.1e-11 73.2 76 51.3
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 1.1e-11 73.2 76 51.3
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 1.1e-11 73.2 53 64.2
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 1.9e-11 72.4 76 52.6
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.9e-11 72.4 69 56.5
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.5e-11 72.0 54 66.7
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 2.5e-11 72.0 54 64.8
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 2.5e-11 72.0 76 53.9
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 2.5e-11 72.0 76 53.9
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 4.3e-11 71.2 54 66.7
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 4.3e-11 71.2 53 62.3
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 7.3e-11 70.5 54 63.0
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 1.3e-10 69.7 48 68.8
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 1.3e-10 69.7 54 66.7
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.6e-10 69.3 53 62.3
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 1.6e-10 69.3 54 63.0
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 2.1e-10 68.9 48 66.7
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 2.8e-10 68.6 53 62.3
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 2.8e-10 68.6 53 62.3
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 2.8e-10 68.6 53 62.3
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 2.8e-10 68.6 53 62.3
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 2.8e-10 68.6 55 63.6
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 3.6e-10 68.2 53 64.2
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 4.8e-10 67.8 76 48.7
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 4.8e-10 67.8 54 64.8
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 6.2e-10 67.4 53 60.4
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 6.2e-10 67.4 53 60.4
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 6.2e-10 67.4 53 60.4
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 6.2e-10 67.4 53 60.4
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 6.2e-10 67.4 53 60.4
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 6.2e-10 67.4 53 60.4
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 6.2e-10 67.4 53 60.4
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 6.2e-10 67.4 53 66.0
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 6.2e-10 67.4 54 59.3
Lsat_1_v5_gn_6_85780 Lactuca sativa HOM05D003501 ORTHO05D004388 8.1e-10 67.0 69 53.6
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 8.1e-10 67.0 54 59.3
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 8.1e-10 67.0 54 59.3
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.1e-09 66.6 54 61.1
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.4e-09 66.2 54 59.3
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 1.4e-09 66.2 41 75.6
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.4e-09 65.5 51 62.7
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 2.4e-09 65.5 53 60.4
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 2.4e-09 65.5 48 66.7
Actinidia15651 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.0e-09 64.7 53 60.4
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 5.3e-09 64.3 51 60.8
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 1.2e-08 63.2 76 48.7
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 1.5e-08 62.8 51 58.8
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 1.5e-08 62.8 51 58.8
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.0e-08 62.4 47 63.8
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.6e-08 62.0 47 63.8
Lsat_1_v5_gn_2_114700 Lactuca sativa HOM05D003501 ORTHO05D004388 5.8e-08 60.8 70 50.0
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 5.8e-08 60.8 71 47.9
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 7.6e-08 60.5 54 59.3
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 1.3e-07 59.7 54 55.6
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 1.7e-07 59.3 52 51.9
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 2.2e-07 58.9 54 59.3
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.2e-07 58.9 54 55.6
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.2e-07 58.9 72 48.6
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.9e-07 58.5 47 57.4
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 2.9e-07 58.5 50 58.0
HPP92_027916 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.9e-07 58.5 47 63.8
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 3.8e-07 58.2 64 48.4
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 4.9e-07 57.8 76 44.7
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 8.4e-07 57.0 54 53.7
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 8.4e-07 57.0 54 53.7
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 8.4e-07 57.0 50 62.0
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 9.3e-06 53.5 47 57.4
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 9.3e-06 53.5 47 57.4


User provided reference genes

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