Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 5.6e-209 730.7 372 100.0
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.8e-175 619.4 381 85.8
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 3.1e-175 618.6 381 85.8
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 3.3e-169 598.6 343 91.0
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 2.9e-165 585.5 376 81.4
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 9.3e-164 580.5 382 79.8
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.9e-161 572.8 373 80.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.5e-161 572.4 376 81.1
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 4.3e-161 571.6 332 87.0
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 9.6e-161 570.5 340 85.3
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 9.6e-161 570.5 374 80.2
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.3e-160 570.1 369 81.6
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.3e-160 570.1 368 81.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.3e-160 570.1 368 81.0
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.6e-160 569.7 338 86.7
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.6e-160 569.7 325 89.2
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.1e-159 567.0 345 84.3
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.8e-159 566.2 340 86.5
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 3.1e-159 565.5 388 77.8
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 3.1e-159 565.5 374 79.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.0e-158 562.8 352 83.5
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.0e-158 562.8 334 87.4
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.4e-158 562.0 375 79.7
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.6e-158 560.8 361 82.0
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 7.6e-158 560.8 359 81.3
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.3e-157 560.1 361 82.8
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.7e-157 559.7 343 84.5
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 3.8e-157 558.5 344 83.7
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.1e-156 557.0 329 86.0
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.4e-156 556.6 327 87.2
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.4e-156 556.6 378 80.2
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.9e-156 556.2 344 83.1
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.9e-156 556.2 348 83.0
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 3.2e-156 555.4 324 87.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 7.2e-156 554.3 340 83.5
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 9.3e-156 553.9 382 78.3
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 9.3e-156 553.9 324 86.4
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 9.3e-156 553.9 324 86.4
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-155 553.5 361 81.2
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.2e-155 553.5 361 81.2
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.1e-155 552.7 367 79.6
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.7e-155 552.4 343 83.7
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 3.6e-155 552.0 340 85.3
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 6.1e-155 551.2 395 77.5
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.1e-155 551.2 373 77.7
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 7.9e-155 550.8 353 79.9
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.3e-154 550.1 347 81.3
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.3e-154 550.1 357 81.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 1.8e-154 549.7 353 79.6
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.9e-154 548.5 324 86.4
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 5.1e-154 548.1 353 79.6
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.1e-153 547.0 341 81.8
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.1e-153 547.0 338 83.4
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.5e-153 546.6 341 82.1
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.5e-153 545.8 341 82.4
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 4.3e-153 545.0 368 78.0
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.3e-153 545.0 341 83.9
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 4.3e-153 545.0 354 81.1
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 5.7e-153 544.7 376 76.9
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 7.4e-153 544.3 341 82.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 9.7e-153 543.9 358 78.5
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 9.7e-153 543.9 324 84.9
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.3e-152 543.5 355 81.1
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.3e-152 543.5 349 81.1
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.8e-152 542.3 378 76.2
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 2.8e-152 542.3 370 77.6
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 3.7e-152 542.0 341 80.6
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.8e-152 541.6 372 76.6
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 6.3e-152 541.2 378 75.1
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.4e-151 540.0 343 80.8
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.8e-151 539.7 345 81.4
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.1e-151 538.5 335 81.5
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 5.3e-151 538.1 360 79.4
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.5e-150 536.6 371 76.8
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-150 535.8 363 77.7
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 3.4e-150 535.4 371 76.8
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.5e-150 535.0 377 76.7
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 4.5e-150 535.0 371 76.8
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.9e-150 534.6 363 77.1
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 5.9e-150 534.6 437 67.7
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.0e-149 533.9 369 76.2
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.7e-149 533.1 386 75.1
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.7e-149 533.1 371 77.1
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.2e-149 532.7 341 80.6
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.9e-149 532.3 359 76.3
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.9e-149 532.3 320 84.1
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 2.9e-149 532.3 343 79.3
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.9e-149 532.3 343 79.3
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 6.5e-149 531.2 371 76.5
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 6.5e-149 531.2 365 76.7
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 6.5e-149 531.2 371 76.5
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 8.5e-149 530.8 353 78.2
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.1e-148 530.4 325 82.8
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.1e-148 530.4 386 74.6
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.4e-148 530.0 371 76.5
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 2.5e-148 529.3 437 67.0
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 3.2e-148 528.9 365 76.7
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 3.2e-148 528.9 432 67.6
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 4.2e-148 528.5 341 80.9
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 4.2e-148 528.5 323 83.6
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 7.2e-148 527.7 333 83.5
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 9.4e-148 527.3 340 80.6
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 3.6e-147 525.4 365 76.2
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.1e-147 524.6 341 82.1
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.9e-147 524.2 339 79.4
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 7.9e-147 524.2 345 77.7
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.8e-146 523.1 340 80.3
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 3.0e-146 522.3 325 81.5
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 3.9e-146 521.9 366 76.8
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 3.9e-146 521.9 366 76.8
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 3.9e-146 521.9 336 79.2
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 5.1e-146 521.5 372 72.8
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 5.1e-146 521.5 346 76.6
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 5.1e-146 521.5 346 76.9
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 8.8e-146 520.8 340 80.3
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 8.8e-146 520.8 340 80.3
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.8e-146 520.8 370 73.8
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 2.0e-145 519.6 325 81.5
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.0e-145 519.6 324 81.5
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.7e-144 515.4 377 71.9
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 3.7e-144 515.4 333 80.5
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 6.3e-144 514.6 351 75.8
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.1e-143 513.8 332 79.2
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-143 513.1 343 77.8
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-143 513.1 343 77.8
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.5e-142 510.0 341 77.7
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-142 509.2 379 71.8
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.0e-141 507.3 359 74.7
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 6.5e-141 504.6 322 81.4
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 7.2e-140 501.1 284 89.1
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 7.9e-139 497.7 315 81.6
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.4e-138 496.9 327 77.1
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.8e-138 496.5 284 89.1
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 6.7e-138 494.6 334 77.5
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.4e-135 486.1 344 73.8
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 2.4e-135 486.1 344 72.1
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 4.1e-135 485.3 371 71.7
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.3e-133 480.3 347 70.3
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 2.2e-133 479.6 365 71.5
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.2e-133 479.6 303 82.8
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.9e-132 476.5 344 72.1
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 8.0e-131 471.1 299 80.6
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.7e-130 468.0 324 73.5
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.4e-129 465.3 325 73.2
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 4.1e-127 458.8 323 72.1
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 1.6e-126 456.8 323 72.1
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.0e-126 456.4 299 76.6
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.2e-115 420.6 300 72.0
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 6.6e-109 398.3 250 82.4
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.5e-108 396.4 309 66.3
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.2e-107 394.0 287 76.0
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 4.9e-104 382.1 268 76.1
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.7e-96 357.1 289 63.7
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 5.6e-92 342.0 229 78.6
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.7e-80 303.9 271 62.7
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 3.8e-72 276.2 179 80.4
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.4e-71 273.5 179 81.0
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.5e-68 264.2 308 51.0
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.5e-65 254.2 350 46.3
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.4e-47 194.5 113 86.7
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 3.5e-46 189.9 112 82.1
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 5.3e-42 176.0 209 55.5
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 2.6e-41 173.7 183 57.9
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 2.6e-41 173.7 183 57.9
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.0e-32 145.2 286 34.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 3.8e-32 143.3 100 74.0
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 3.8e-32 143.3 102 71.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 3.8e-32 143.3 100 74.0
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.5e-31 140.6 100 73.0
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 1.2e-30 138.3 98 72.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.0e-29 135.2 104 68.3
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 3.3e-28 130.2 105 63.8
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 4.8e-27 126.3 104 63.5
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.8e-18 97.8 62 75.8
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 2.4e-18 97.4 67 77.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.3e-16 91.7 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 5.0e-16 89.7 61 80.3
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 2.5e-07 60.8 36 80.6
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.7e-06 57.4 36 77.8


User provided reference genes

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