Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 6.7e-169 597.4 336 100.0
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 6.7e-169 597.4 336 100.0
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 2.3e-161 572.4 336 93.5
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 4.5e-157 558.1 336 91.7
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 3.8e-156 555.1 336 89.9
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 3.8e-156 555.1 336 89.9
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 5.5e-155 551.2 336 89.3
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.5e-154 548.5 336 90.8
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 4.6e-154 548.1 336 89.0
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 4.6e-154 548.1 337 89.6
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 2.3e-153 545.8 336 90.2
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 3.0e-153 545.4 336 88.4
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.9e-152 542.7 336 85.1
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.3e-152 541.6 337 88.1
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.3e-151 540.0 336 89.3
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.3e-151 540.0 336 89.3
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.3e-151 540.0 336 90.2
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.2e-151 539.3 336 87.5
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.2e-151 539.3 336 88.4
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.2e-151 539.3 336 87.8
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 2.8e-151 538.9 336 89.0
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 4.8e-151 538.1 336 89.3
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 4.8e-151 538.1 336 87.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 4.8e-151 538.1 336 87.2
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 8.2e-151 537.3 336 87.5
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 8.2e-151 537.3 336 87.2
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.4e-150 536.6 336 89.0
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 4.1e-150 535.0 337 87.2
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.2e-149 533.5 348 85.6
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 3.4e-149 531.9 336 86.6
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 4.5e-149 531.6 336 86.6
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 7.7e-149 530.8 336 86.9
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.0e-148 528.1 336 86.6
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 8.5e-148 527.3 336 85.7
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.4e-147 526.6 343 87.2
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.4e-147 526.6 336 85.4
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 1.9e-147 526.2 336 85.1
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.9e-147 526.2 352 84.9
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.9e-147 526.2 338 86.4
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.9e-147 526.2 336 86.0
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 9.4e-147 523.9 336 87.5
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.6e-146 523.1 336 85.1
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 2.1e-146 522.7 337 85.5
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 3.6e-146 521.9 336 86.3
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 7.9e-146 520.8 339 85.8
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.0e-145 520.4 336 86.9
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.0e-145 520.4 336 86.9
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.4e-145 520.0 336 86.9
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.4e-145 520.0 336 86.9
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.8e-145 519.6 336 79.8
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 3.0e-145 518.8 336 86.3
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 8.8e-145 517.3 354 81.9
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 8.8e-145 517.3 354 81.9
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 8.8e-145 517.3 364 80.5
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.5e-144 515.8 339 85.8
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 3.3e-144 515.4 336 86.9
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 4.3e-144 515.0 337 84.0
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.7e-143 513.1 336 86.0
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 2.8e-143 512.3 338 85.5
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 2.8e-143 512.3 336 83.6
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 3.7e-143 511.9 337 83.4
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 3.7e-143 511.9 336 86.0
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 4.8e-143 511.5 337 81.6
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 4.8e-143 511.5 338 85.2
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 6.3e-143 511.1 337 81.6
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 8.2e-143 510.8 337 81.9
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 8.2e-143 510.8 336 84.5
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 2.4e-142 509.2 338 85.2
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 4.1e-142 508.4 338 84.0
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 5.3e-142 508.1 371 78.7
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.2e-141 506.9 339 84.7
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.5e-141 506.5 360 82.2
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 2.0e-141 506.1 336 82.7
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 2.6e-141 505.8 337 82.8
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 2.6e-141 505.8 321 86.3
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.7e-140 503.1 336 78.6
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 5.0e-140 501.5 330 85.5
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 3.2e-139 498.8 336 85.1
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 3.2e-139 498.8 376 76.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 5.5e-139 498.0 346 81.5
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.2e-138 496.9 344 82.0
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 1.2e-138 496.9 336 84.2
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.6e-138 496.5 330 84.5
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 3.6e-138 495.4 351 80.1
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.8e-137 493.0 346 81.2
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 3.0e-137 492.3 337 84.0
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.9e-137 491.9 336 80.4
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 3.9e-137 491.9 321 85.7
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 5.1e-137 491.5 331 83.7
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.1e-136 490.3 337 81.3
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.1e-136 490.3 337 81.3
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 2.6e-136 489.2 321 86.0
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 4.4e-136 488.4 339 77.9
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 2.2e-135 486.1 348 81.0
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.8e-135 485.7 336 76.2
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.2e-135 484.2 336 80.1
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.8e-134 483.0 336 82.1
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 85.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 85.5
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 4.1e-134 481.9 336 79.8
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 4.5e-133 478.4 366 76.8
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.9e-131 473.0 336 79.2
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.5e-131 471.5 364 75.5
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.5e-131 471.5 364 75.5
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 5.9e-125 451.4 305 84.3
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.9e-123 446.4 336 76.2
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 2.3e-121 439.5 337 76.3
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.2e-119 433.0 283 86.6
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 1.6e-117 426.8 334 77.5
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 4.5e-117 425.2 352 71.0
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.0e-113 414.1 274 86.9
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 2.0e-112 409.8 515 53.4
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.0e-109 399.8 222 85.6
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.7e-108 396.7 341 73.9
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 5.7e-104 381.7 321 73.2
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 3.7e-103 379.0 320 73.8
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 2.5e-99 366.3 255 86.3
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.7e-98 362.1 336 67.9
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.3e-92 343.2 277 71.8
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 6.6e-92 341.7 336 64.6
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 5.1e-84 315.5 381 46.5
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.6e-80 303.1 163 89.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.4e-78 297.4 330 52.4
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 8.6e-76 288.1 183 80.9
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 9.3e-62 241.5 326 47.2
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 3.5e-61 239.6 211 73.9
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.5e-53 213.0 110 90.9
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 2.7e-45 186.8 165 67.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 9.6e-43 178.3 81 98.8
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.2e-40 171.4 91 94.5
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 9.7e-35 151.8 89 88.8
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 2.8e-34 150.2 89 86.5
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 5.0e-23 112.8 55 98.2
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.4e-20 104.8 64 87.5
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 2.0e-16 90.9 203 28.1
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 6.5e-15 85.9 266 27.4
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.2e-14 83.6 63 63.5
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.2e-14 83.2 83 79.5
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.6e-11 73.9 54 66.7
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.8e-09 67.8 29 93.1


User provided reference genes

Program Settings