Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p047070 Quercus lobata HOM05D001273 ORTHO05D023773 1.4e-102 376.3 194 100.0
QL02p042453 Quercus lobata HOM05D001273 ORTHO05D000023 2.9e-100 368.6 194 98.5
Cfa003211 Carpinus fangiana HOM05D001273 ORTHO05D000023 1.4e-57 226.9 195 64.6
CiPaw.03G227000 Carya illinoinensis HOM05D001273 ORTHO05D000023 5.9e-53 211.5 196 64.8
Haze_25797 Corylus avellana HOM05D001273 ORTHO05D000023 1.4e-49 200.3 187 61.0
Gohir.A06G065800 Gossypium hirsutum HOM05D001273 ORTHO05D000023 2.8e-34 149.4 186 47.8
MD15G1193500 Malus domestica HOM05D001273 ORTHO05D000023 3.6e-34 149.1 199 49.2
TAR624G0236 Trochodendron aralioides HOM05D001273 ORTHO05D000023 1.8e-33 146.7 193 46.1
Dinv41652 Davidia involucrata HOM05D001273 ORTHO05D000023 3.1e-33 146.0 189 50.8
Thecc.09G103900 Theobroma cacao HOM05D001273 ORTHO05D000023 4.0e-33 145.6 197 45.2
Gorai.010G075200 Gossypium raimondii HOM05D001273 ORTHO05D000023 5.8e-32 141.7 186 45.7
Gohir.D06G064400 Gossypium hirsutum HOM05D001273 ORTHO05D000023 4.9e-31 138.7 186 45.2
MD02G1059500 Malus domestica HOM05D001273 ORTHO05D000023 1.4e-30 137.1 196 45.9
Actinidia20411 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.4e-30 136.3 190 45.8
RcHm_v2.0_Chr2g0091431 Rosa chinensis HOM05D001273 ORTHO05D000023 7.8e-29 131.3 200 46.0
Prupe.7G223600 Prunus persica HOM05D001273 ORTHO05D000023 1.7e-28 130.2 191 45.5
Duzib168G1568 Durio zibethinus HOM05D001273 ORTHO05D000023 1.1e-27 127.5 158 51.3
CSS0003269 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 9.5e-27 124.4 169 45.0
Sabra06G0125500 Salix brachista HOM05D001273 ORTHO05D000023 8.1e-26 121.3 159 50.3
Eucgr.F01559 Eucalyptus grandis HOM05D001273 ORTHO05D000023 1.4e-25 120.6 144 51.4
EL10Ac8g18963 Beta vulgaris HOM05D001273 ORTHO05D000023 1.8e-25 120.2 130 54.6
Sc08g0007820 Simmondsia chinensis HOM05D001273 ORTHO05D000023 2.3e-25 119.8 158 43.7
MBI04_g27066_MAGBIO Magnolia biondii HOM05D001273 ORTHO05D000023 6.8e-25 118.2 165 43.6
COL.COLO4_34785 Corchorus olitorius HOM05D001273 ORTHO05D000023 8.9e-25 117.9 137 51.1
Manes.16G111400 Manihot esculenta HOM05D001273 ORTHO05D000023 8.9e-25 117.9 205 41.5
Potri.006G163100 Populus trichocarpa HOM05D001273 ORTHO05D000023 2.0e-24 116.7 143 53.8
Aqoxy7G03909 Aquilegia oxysepala HOM05D001273 ORTHO05D000023 4.4e-24 115.5 144 47.2
Phvul.002G310400 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 4.4e-24 115.5 194 42.3
Sed0022257 Sechium edule HOM05D001273 ORTHO05D000023 4.4e-24 115.5 121 55.4
CANSAT56G4419 Cannabis sativa HOM05D001273 ORTHO05D000023 7.6e-24 114.8 214 36.0
arahy.Tifrunner.gnm1.ann1.1EV8X8 Arachis hypogaea HOM05D001273 ORTHO05D000023 1.3e-23 114.0 195 40.0
arahy.Tifrunner.gnm1.ann1.CYHU50 Arachis hypogaea HOM05D001273 ORTHO05D000023 1.3e-23 114.0 147 48.3
Medtr8g102850 Medicago truncatula HOM05D001273 ORTHO05D000023 1.3e-23 114.0 166 44.6
TWI63G0391 Tripterygium wilfordii HOM05D001273 ORTHO05D000023 1.3e-23 114.0 158 43.0
PGR142G4117 Punica granatum HOM05D001273 ORTHO05D000023 1.7e-23 113.6 126 47.6
Cpa.g.sc40.34 Carica papaya HOM05D001273 ORTHO05D000023 2.2e-23 113.2 130 50.0
Hma1.2p1_0945F.1_g240220 Hydrangea macrophylla HOM05D001273 ORTHO05D000023 3.8e-23 112.5 158 48.1
arahy.Tifrunner.gnm1.ann1.KPXK74 Arachis hypogaea HOM05D001273 ORTHO05D000023 4.9e-23 112.1 147 49.7
FAN28G1921 Fragaria x ananassa HOM05D001273 ORTHO05D000023 6.4e-23 111.7 144 51.4
GSVIVG01015331001 Vitis vinifera HOM05D001273 ORTHO05D000023 8.4e-23 111.3 135 51.1
ClCG11G002280 Citrullus lanatus HOM05D001273 ORTHO05D000023 2.4e-22 109.8 162 47.5
FvH4_1g05780 Fragaria vesca HOM05D001273 ORTHO05D000023 4.1e-22 109.0 144 50.7
FAN19G2994 Fragaria x ananassa HOM05D001273 ORTHO05D000023 4.1e-22 109.0 144 50.7
Rhsim05G0042000 Rhododendron simsii HOM05D001273 ORTHO05D000023 4.1e-22 109.0 173 42.2
Glyma.08G035200 Glycine max HOM05D001273 ORTHO05D000023 5.4e-22 108.6 193 37.8
TPR.G23497 Trifolium pratense HOM05D001273 ORTHO05D000023 7.1e-22 108.2 144 47.9
arahy.Tifrunner.gnm1.ann1.E4JC76 Arachis hypogaea HOM05D001273 ORTHO05D000023 9.2e-22 107.8 141 50.4
CAN.G1812.8 Capsicum annuum HOM05D001273 ORTHO05D000023 1.2e-21 107.5 168 42.3
PGSC0003DMG400027434 Solanum tuberosum HOM05D001273 ORTHO05D000023 1.6e-21 107.1 169 41.4
CSS0020653 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 2.1e-21 106.7 116 51.7
Peaxi162Scf00539g00006 Petunia axillaris HOM05D001273 ORTHO05D000023 2.1e-21 106.7 135 51.1
arahy.Tifrunner.gnm1.ann1.60E57G Arachis hypogaea HOM05D001273 ORTHO05D023773 2.7e-21 106.3 146 47.9
MELO3C004577.2 Cucumis melo HOM05D001273 ORTHO05D000023 2.7e-21 106.3 157 45.9
Solyc05g018240.4 Solanum lycopersicum HOM05D001273 ORTHO05D000023 2.7e-21 106.3 169 40.2
arahy.Tifrunner.gnm1.ann1.T8DWUL Arachis hypogaea HOM05D001273 ORTHO05D000023 3.5e-21 105.9 147 49.7
Glyma.05G228300 Glycine max HOM05D001273 ORTHO05D023773 4.6e-21 105.5 193 39.9
Oeu053754.1 Olea europaea HOM05D001273 ORTHO05D000023 4.6e-21 105.5 170 44.1
VMungo0251G1268 Vigna mungo HOM05D001273 ORTHO05D000023 7.8e-21 104.8 141 45.4
DCAR_024698 Daucus carota HOM05D001273 ORTHO05D000023 1.0e-20 104.4 205 38.5
Eucgr.F00668 Eucalyptus grandis HOM05D001273 ORTHO05D000023 1.0e-20 104.4 143 45.5
Nitab4.5_0000012g0190 Nicotiana tabacum HOM05D001273 ORTHO05D000023 1.3e-20 104.0 142 45.8
Nitab4.5_0000066g0210 Nicotiana tabacum HOM05D001273 ORTHO05D000023 1.3e-20 104.0 142 45.8
Hund09234 Selenicereus undatus HOM05D001273 ORTHO05D000023 1.7e-20 103.6 164 44.5
CsaV3_2G002040 Cucumis sativus L. HOM05D001273 ORTHO05D000023 6.6e-20 101.7 119 53.8
Sopen05g015000 Solanum pennellii HOM05D001273 ORTHO05D000023 1.5e-19 100.5 169 39.6
Psat7g015680 Pisum sativum HOM05D001273 ORTHO05D000023 1.9e-19 100.1 140 43.6
vmacro10866 Vaccinium macrocarpon HOM05D001273 ORTHO05D000023 1.9e-19 100.1 130 46.2
ECA240G3615 Erigeron canadensis HOM05D001273 ORTHO05D000023 2.5e-19 99.8 135 43.7
Lalb_Chr09g0331391 Lupinus albus HOM05D001273 ORTHO05D000023 2.5e-19 99.8 143 45.5
Cc06_g10200 Coffea canephora HOM05D001273 ORTHO05D000023 1.6e-18 97.1 191 36.1
Lj4g0007510 Lotus japonicus HOM05D001273 ORTHO05D000023 1.6e-18 97.1 159 41.5
SalBow8G2593 Salvia bowleyana HOM05D001273 ORTHO05D000023 2.1e-18 96.7 131 43.5
AUR62028324 Chenopodium quinoa HOM05D001273 ORTHO05D000023 2.8e-18 96.3 146 41.8
Atru.chr7.1426 Acer truncatum HOM05D001273 ORTHO05D000023 1.1e-17 94.4 102 49.0
Dinv36704 Davidia involucrata HOM05D001273 ORTHO05D023773 1.4e-17 94.0 103 53.4
BcaB03g16793 Brassica carinata HOM05D001273 ORTHO05D000023 2.4e-17 93.2 164 36.6
Ciclev10010654m.g Citrus clementina HOM05D001273 ORTHO05D000023 2.4e-17 93.2 160 40.0
Carub.0003s3429 Capsella rubella HOM05D001273 ORTHO05D000023 4.0e-17 92.4 171 38.0
AL3G48070 Arabidopsis lyrata HOM05D001273 ORTHO05D000023 2.0e-16 90.1 169 36.7
Thhalv10001924m.g Eutrema salsugineum HOM05D001273 ORTHO05D000023 2.6e-16 89.7 165 35.2
Lsat_1_v5_gn_7_41120 Lactuca sativa HOM05D001273 ORTHO05D000023 2.6e-16 89.7 120 46.7
AT2G20020 Arabidopsis thaliana HOM05D001273 ORTHO05D000023 4.4e-16 89.0 170 35.9
SGA_v2.0_scaffold19G08759 Striga asiatica HOM05D001273 ORTHO05D000023 1.7e-15 87.0 124 42.7
CARHR110500 Cardamine hirsuta HOM05D001273 ORTHO05D000023 2.2e-15 86.7 134 42.5
Aa31LG8G16960 Aethionema arabicum HOM05D001273 ORTHO05D000023 2.9e-15 86.3 120 41.7
Sp3g33340 Schrenkiella parvula HOM05D001273 ORTHO05D000023 2.9e-15 86.3 174 35.6
HanXRQChr09g0238911 Helianthus annuus HOM05D001273 ORTHO05D000023 3.8e-15 85.9 148 40.5
C07p01140 Brassica napus HOM05D001273 ORTHO05D000023 4.9e-15 85.5 158 35.4
PSO210G6932 Papaver somniferum HOM05D001273 ORTHO05D000023 6.4e-15 85.1 129 45.7
BcaC06g36677 Brassica carinata HOM05D001273 ORTHO05D000023 8.4e-15 84.7 158 35.4
A07p00620 Brassica napus HOM05D001273 ORTHO05D000023 8.4e-15 84.7 158 34.8
BolC7t40559H Brassica oleracea HOM05D001273 ORTHO05D000023 8.4e-15 84.7 158 35.4
AUR62025336 Chenopodium quinoa HOM05D001273 ORTHO05D000023 1.1e-14 84.3 91 49.5
THA.LOC104804012 Tarenaya hassleriana HOM05D001273 ORTHO05D000023 1.1e-14 84.3 126 46.0
Lalb_Chr14g0371751 Lupinus albus HOM05D001273 ORTHO05D000023 1.9e-14 83.6 172 38.4
PSO210G5770 Papaver somniferum HOM05D001273 ORTHO05D000023 2.4e-14 83.2 138 44.2
Migut.K00519 Erythranthe guttata HOM05D001273 ORTHO05D000023 3.2e-14 82.8 145 38.6
unitig_0.g2550 Utricularia gibba HOM05D001273 ORTHO05D023773 3.2e-14 82.8 131 41.2
Ah.09g228900 Amaranthus hybridus HOM05D001273 ORTHO05D000023 7.1e-14 81.6 121 43.8
Lj2g0012244 Lotus japonicus HOM05D001273 ORTHO05D000023 1.2e-13 80.9 128 45.3
BraA07t27858Z Brassica rapa HOM05D001273 ORTHO05D000023 1.6e-13 80.5 127 37.8
HPP92_024166 Vanilla planifolia HOM05D001273 ORTHO05D000023 2.7e-13 79.7 152 34.2
Glyma.01G147400 Glycine max HOM05D001273 ORTHO05D000023 6.0e-13 78.6 133 40.6
Lj4A407G8 Lonicera japonica HOM05D001273 ORTHO05D000023 5.1e-12 75.5 75 53.3
Os01g0495900 Oryza sativa ssp. japonica HOM05D001273 ORTHO05D000023 5.6e-11 72.0 124 38.7
Phvul.003G026601 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 5.6e-11 72.0 70 54.3
ATR0705G141 Amborella trichopoda HOM05D001273 ORTHO05D000023 7.3e-11 71.6 148 39.2
SEGI_33533 Sequoiadendron giganteum HOM05D001273 ORTHO05D024654 1.7e-07 60.5 115 33.0
Eucgr.E00602 Eucalyptus grandis HOM05D001273 ORTHO05D000023 8.4e-07 58.2 58 56.9
Zm00001eb306430 Zea mays HOM05D001273 ORTHO05D000023 3.2e-06 56.2 123 34.1
CAN.G1111.1 Capsicum annuum HOM05D001273 ORTHO05D000023 9.3e-06 54.7 108 37.0


User provided reference genes

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