Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p024034 Quercus lobata HOM05D001937 ORTHO05D003828 6.9e-113 410.6 200 100.0
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 4.2e-62 241.9 220 60.5
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 1.2e-59 233.8 220 59.1
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 9.5e-46 187.6 220 48.6
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 1.4e-44 183.7 220 49.5
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 1.8e-44 183.3 221 52.0
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 9.2e-41 171.0 218 45.0
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 1.7e-39 166.8 218 43.6
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 3.8e-39 165.6 221 46.2
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 8.6e-39 164.5 220 46.8
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 3.6e-37 159.1 220 46.4
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 2.0e-35 153.3 222 41.4
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 9.8e-35 151.0 214 43.9
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.7e-34 150.2 215 45.1
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 1.7e-34 150.2 219 44.3
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 1.7e-34 150.2 201 44.3
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 2.9e-34 149.4 212 44.8
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 4.9e-34 148.7 216 45.8
Atru.chr8.1123 Acer truncatum HOM05D001937 ORTHO05D003828 6.4e-34 148.3 216 41.7
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 6.4e-34 148.3 221 44.3
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 6.4e-34 148.3 221 44.3
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 3.2e-33 146.0 215 44.7
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 4.1e-33 145.6 221 43.9
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 4.1e-33 145.6 219 42.0
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 4.1e-33 145.6 217 44.7
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 5.4e-33 145.2 221 43.4
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 7.0e-33 144.8 218 44.0
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 9.2e-33 144.4 212 43.9
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 1.2e-32 144.1 212 43.9
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 1.6e-32 143.7 216 42.1
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 1.6e-32 143.7 219 41.6
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 2.7e-32 142.9 220 43.6
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 2.7e-32 142.9 212 44.8
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 2.7e-32 142.9 217 42.4
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 2.7e-32 142.9 224 40.6
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 3.5e-32 142.5 221 43.0
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 3.5e-32 142.5 215 44.2
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 3.5e-32 142.5 220 44.1
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 4.6e-32 142.1 217 43.8
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 4.6e-32 142.1 215 41.9
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 4.6e-32 142.1 222 39.6
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.0e-31 141.0 220 45.0
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 3.0e-31 139.4 221 40.7
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 3.0e-31 139.4 217 41.9
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 8.6e-31 137.9 212 42.5
FAN23G2404 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.9e-30 136.7 226 42.9
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 2.5e-30 136.3 217 41.0
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 4.3e-30 135.6 224 44.2
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 7.3e-30 134.8 224 39.3
Cpa.g.sc471.1 Carica papaya HOM05D001937 ORTHO05D003828 1.6e-29 133.7 218 40.8
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 3.6e-29 132.5 220 40.5
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 3.6e-29 132.5 220 40.5
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 4.7e-29 132.1 219 40.6
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 4.7e-29 132.1 226 43.4
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 1.1e-28 131.0 216 39.8
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 1.4e-28 130.6 223 41.7
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 2.3e-28 129.8 215 40.5
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 2.3e-28 129.8 132 51.5
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 3.1e-28 129.4 219 40.6
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 4.0e-28 129.0 220 38.6
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 4.0e-28 129.0 220 40.9
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 8.9e-28 127.9 218 42.2
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 4.4e-27 125.6 219 37.4
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 7.5e-27 124.8 207 42.0
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 9.8e-27 124.4 219 37.4
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 9.8e-27 124.4 215 40.9
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 1.3e-26 124.0 201 41.3
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 2.9e-26 122.9 219 37.0
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 4.9e-26 122.1 192 40.6
Prupe.1G009900 Prunus persica HOM05D001937 ORTHO05D003828 8.3e-26 121.3 197 43.1
Aqoxy3G01595 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.4e-25 119.8 220 38.2
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 2.4e-25 119.8 219 37.9
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 9.2e-25 117.9 217 41.0
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 1.2e-24 117.5 216 38.9
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 7.8e-24 114.8 212 36.8
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 1.3e-23 114.0 215 38.6
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 1.7e-23 113.6 218 36.7
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 8.6e-23 111.3 224 38.4
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 1.9e-22 110.2 218 36.7
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 3.3e-22 109.4 211 38.9
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 9.5e-22 107.8 206 37.9
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 2.1e-21 106.7 198 36.4
Aqoxy3G01486 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.3e-20 103.2 212 36.3
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 2.3e-20 103.2 204 34.8
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 3.4e-19 99.4 226 37.2
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 7.5e-19 98.2 193 38.9
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 9.9e-19 97.8 193 38.9
Atru.chr3.3792 Acer truncatum HOM05D001937 ORTHO05D003828 2.2e-18 96.7 109 48.6
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 4.1e-17 92.4 217 33.6
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 7.1e-17 91.7 205 35.1
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 3.5e-16 89.4 224 31.7
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 3.0e-15 86.3 217 32.7
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 1.1e-14 84.3 225 31.6
CARHR094480 Cardamine hirsuta HOM05D001937 ORTHO05D003828 1.5e-14 84.0 216 31.5
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 2.5e-14 83.2 216 32.9
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 4.3e-14 82.4 216 32.4
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 4.3e-14 82.4 216 32.9
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 5.6e-14 82.0 217 32.3
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 7.3e-14 81.6 222 29.7
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 7.3e-14 81.6 198 32.8
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 9.5e-14 81.3 216 32.9
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 1.2e-13 80.9 217 32.7
SEGI_13781 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 2.1e-13 80.1 211 31.8
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 4.7e-13 79.0 217 30.9
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 1.4e-12 77.4 197 33.5
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 3.1e-12 76.3 197 32.0
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 4.0e-12 75.9 117 39.3
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 6.8e-12 75.1 209 29.7
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 2.0e-11 73.6 215 29.3
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 2.0e-11 73.6 200 29.0
Os06g0645901 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 3.4e-11 72.8 139 36.0
CDE08G0555 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 9.9e-11 71.2 204 32.8
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 1.3e-10 70.9 208 28.8
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 1.3e-10 70.9 209 28.7
HPP92_017203 Vanilla planifolia HOM05D001937 ORTHO05D003828 1.3e-10 70.9 128 38.3
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 1.7e-10 70.5 208 28.8
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 1.7e-10 70.5 208 28.8
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 1.7e-10 70.5 203 32.5
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 3.8e-10 69.3 126 36.5
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 9.2e-09 64.7 220 30.9
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 3.9e-07 59.3 149 37.6


User provided reference genes

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