Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 4.4e-270 934.1 495 100.0
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 4.1e-207 724.9 501 75.6
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 3.8e-205 718.4 499 74.9
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 5.5e-204 714.5 496 75.8
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 1.0e-197 693.7 454 76.4
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 1.5e-193 679.9 500 71.6
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 5.7e-193 677.9 489 74.2
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 5.7e-193 677.9 507 72.2
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 8.2e-192 674.1 441 77.6
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 1.8e-191 672.9 498 70.1
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 3.1e-191 672.2 431 77.5
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 5.3e-191 671.4 524 69.3
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 5.3e-191 671.4 428 78.3
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 5.3e-191 671.4 431 77.5
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 9.1e-191 670.6 431 77.0
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 1.2e-190 670.2 488 71.3
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 2.0e-190 669.5 440 76.4
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 7.7e-190 667.5 431 77.5
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 7.7e-190 667.5 431 77.3
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 7.7e-190 667.5 433 77.4
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 1.3e-189 666.8 428 77.1
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 1.7e-189 666.4 515 69.7
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 2.2e-189 666.0 425 79.5
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 2.9e-189 665.6 486 71.8
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 2.9e-189 665.6 421 77.7
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 3.8e-189 665.2 472 71.2
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 5.0e-189 664.8 421 77.4
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 8.5e-189 664.1 423 79.4
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 1.5e-188 663.3 425 78.4
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 1.9e-188 662.9 502 69.1
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 3.2e-188 662.1 441 75.5
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 7.2e-188 661.0 450 73.3
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 9.4e-188 660.6 511 68.1
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 9.4e-188 660.6 500 70.6
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 1.2e-187 660.2 438 75.8
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 2.7e-187 659.1 423 77.3
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 3.6e-187 658.7 511 70.6
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 3.6e-187 658.7 420 76.7
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 6.1e-187 657.9 513 67.3
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 6.1e-187 657.9 505 68.5
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 5.2e-186 654.8 506 69.2
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 6.8e-186 654.4 492 68.3
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 8.8e-186 654.1 498 68.1
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 8.8e-186 654.1 454 72.9
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 1.2e-185 653.7 442 74.9
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 1.2e-185 653.7 485 68.0
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 1.2e-185 653.7 498 67.9
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 2.0e-185 652.9 426 76.1
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 2.0e-185 652.9 483 69.4
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 2.0e-185 652.9 499 67.7
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 2.6e-185 652.5 429 76.0
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 2.2e-184 649.4 429 76.2
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 2.2e-184 649.4 425 76.2
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.3e-184 647.9 485 68.0
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 7.0e-183 644.4 454 72.2
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 9.1e-183 644.0 426 75.1
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 1.2e-182 643.7 427 74.7
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 3.5e-182 642.1 427 74.5
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 1.3e-181 640.2 427 73.8
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 1.7e-181 639.8 501 66.9
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.3e-181 639.4 490 66.3
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 2.9e-181 639.0 426 74.2
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 1.1e-180 637.1 507 67.1
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 1.1e-180 637.1 434 71.9
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 1.5e-180 636.7 424 74.1
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.9e-180 636.3 422 75.1
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 1.9e-180 636.3 426 75.4
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 9.5e-180 634.0 424 73.8
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.6e-179 633.3 424 73.8
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 2.1e-179 632.9 421 73.4
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 2.1e-179 632.9 421 73.4
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 2.1e-179 632.9 427 73.8
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 2.8e-179 632.5 420 73.6
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 4.7e-179 631.7 425 73.9
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 6.1e-179 631.3 424 73.3
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 1.4e-178 630.2 426 73.9
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 1.8e-178 629.8 424 72.9
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 1.8e-178 629.8 515 65.2
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 2.3e-178 629.4 427 72.6
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 6.8e-178 627.9 424 72.9
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 8.8e-178 627.5 427 72.4
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 2.2e-176 622.9 508 64.0
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 2.8e-176 622.5 431 73.1
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 2.8e-176 622.5 431 73.1
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 2.8e-176 622.5 427 73.3
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 6.3e-176 621.3 442 71.3
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 1.1e-175 620.5 584 59.8
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.1e-175 620.5 438 71.5
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 3.1e-175 619.0 424 74.3
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.2e-174 617.1 431 71.7
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 2.7e-174 615.9 493 65.9
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 3.5e-174 615.5 419 73.7
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 5.9e-174 614.8 437 69.6
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 5.9e-174 614.8 439 71.3
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.0e-173 614.0 430 71.2
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.3e-173 613.6 438 70.3
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 2.9e-173 612.5 442 70.4
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.9e-172 609.8 432 70.1
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 2.5e-172 609.4 512 64.5
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 5.6e-172 608.2 450 68.2
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 5.6e-172 608.2 531 62.5
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 5.7e-169 598.2 447 68.2
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 1.0e-165 587.4 422 69.9
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.6e-163 580.1 425 67.8
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 3.6e-163 578.9 433 66.7
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 5.4e-159 565.1 418 65.6
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 7.0e-159 564.7 438 67.6
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 3.3e-156 555.8 434 65.2
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 8.6e-149 531.2 491 59.7
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 1.8e-146 523.5 428 59.1
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 3.1e-146 522.7 312 82.7
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 6.8e-146 521.5 371 70.1
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 9.2e-143 511.1 443 62.5
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 1.2e-139 500.7 429 59.0
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 2.4e-138 496.5 424 63.0
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.0e-133 479.6 496 54.6
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 2.5e-132 476.5 494 50.2
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 1.2e-129 467.6 477 51.6
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 1.3e-125 454.1 410 60.0
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 9.0e-114 414.8 445 53.9
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.5e-100 370.9 233 76.0
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 3.3e-84 316.6 422 40.5
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 1.1e-82 311.6 394 45.9
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 8.0e-70 268.9 437 42.6
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 1.0e-69 268.5 224 58.5
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 1.2e-68 265.0 180 70.0
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 4.4e-68 263.1 251 57.8
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 4.5e-65 253.1 327 48.6
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 5.0e-64 249.6 174 73.0
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 6.8e-61 239.2 458 31.0
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 4.4e-60 236.5 276 42.4
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.7e-49 200.7 148 69.6
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 2.8e-46 190.7 380 36.1
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 7.3e-39 166.0 132 65.9
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 8.3e-35 152.5 112 64.3
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.2e-33 148.7 96 72.9
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.9e-23 114.8 68 82.4
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 8.1e-22 109.4 89 62.9
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 1.2e-20 105.5 70 71.4
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 2.2e-19 101.3 57 84.2
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 1.7e-16 91.7 85 60.0
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 3.6e-14 84.0 58 67.2
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 4.8e-14 83.6 105 47.6
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 2.6e-12 77.8 134 36.6
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 7.6e-12 76.3 49 73.5
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 7.6e-12 76.3 49 73.5
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 2.2e-11 74.7 72 61.1
QL03p022406 Quercus lobata HOM05D005235 ORTHO05D338155 7.9e-09 66.2 203 37.9


User provided reference genes

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