Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 1.5e-144 516.2 258 100.0
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 1.1e-115 420.2 244 85.7
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 1.1e-115 420.2 244 85.7
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 3.6e-114 415.2 247 85.8
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 6.1e-114 414.5 247 85.4
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 6.8e-113 411.0 247 85.4
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 2.5e-99 365.9 247 76.9
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 3.3e-99 365.5 247 75.7
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.2e-98 363.6 247 76.9
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 3.6e-98 362.1 252 75.8
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 4.7e-98 361.7 244 78.3
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 6.2e-98 361.3 247 76.5
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 2.3e-97 359.4 259 72.2
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 3.1e-97 359.0 250 75.6
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 4.0e-97 358.6 250 76.4
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 6.8e-97 357.8 271 70.1
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 8.9e-97 357.5 247 76.1
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 3.4e-96 355.5 247 75.7
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 4.4e-96 355.1 250 74.8
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 4.4e-96 355.1 250 74.8
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 9.8e-96 354.0 250 74.8
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 1.3e-95 353.6 248 75.0
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 1.7e-95 353.2 251 74.9
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 1.7e-95 353.2 250 74.0
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 2.2e-95 352.8 247 74.5
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 4.9e-95 351.7 247 74.1
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 4.9e-95 351.7 253 73.9
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 4.9e-95 351.7 244 74.2
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 8.3e-95 350.9 247 74.1
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 1.1e-94 350.5 254 73.2
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.1e-94 350.5 249 72.3
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 1.1e-94 350.5 250 75.6
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 1.9e-94 349.7 247 73.7
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.4e-94 349.4 236 76.7
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 3.2e-94 349.0 247 73.7
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 3.2e-94 349.0 247 74.5
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 4.1e-94 348.6 247 74.5
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 4.1e-94 348.6 247 74.5
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 9.2e-94 347.4 248 73.4
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 3.5e-93 345.5 236 76.3
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 7.8e-93 344.4 247 73.3
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 1.0e-92 344.0 248 72.2
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.3e-92 343.6 243 72.8
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 3.9e-92 342.0 273 67.0
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 6.6e-92 341.3 247 70.4
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 3.3e-91 339.0 250 72.4
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 4.3e-91 338.6 242 72.7
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 7.3e-91 337.8 244 72.5
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 7.3e-91 337.8 244 72.5
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 1.6e-90 336.7 245 72.7
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 6.2e-90 334.7 244 71.3
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 1.8e-89 333.2 247 70.4
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 2.3e-89 332.8 244 69.3
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.1e-89 332.4 267 67.0
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.1e-89 332.4 244 70.9
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.2e-89 331.6 266 66.5
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 6.8e-89 331.3 267 67.0
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 6.8e-89 331.3 267 67.0
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 1.2e-88 330.5 244 71.3
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.5e-88 330.1 244 69.3
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 2.0e-88 329.7 241 72.2
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 2.0e-88 329.7 239 74.5
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 2.6e-88 329.3 274 64.2
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 2.6e-88 329.3 247 71.3
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 3.4e-88 328.9 255 67.5
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 4.4e-88 328.6 244 68.9
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 5.8e-88 328.2 241 71.8
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 5.8e-88 328.2 267 66.7
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.3e-87 327.0 267 66.3
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 1.7e-87 326.6 241 71.8
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 1.7e-87 326.6 241 71.8
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 1.7e-87 326.6 250 70.0
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 2.2e-87 326.2 241 71.4
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 2.2e-87 326.2 241 71.4
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 2.2e-87 326.2 244 71.7
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 6.4e-87 324.7 268 66.0
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.1e-86 323.9 244 69.7
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.1e-86 323.9 244 68.0
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 9.2e-86 320.9 252 67.1
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 4.6e-85 318.5 247 69.2
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 7.8e-85 317.8 252 66.3
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 2.3e-84 316.2 248 67.7
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 2.3e-84 316.2 269 64.3
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 5.1e-84 315.1 244 68.4
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 6.6e-84 314.7 244 67.6
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.5e-83 313.5 245 68.6
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 2.5e-83 312.8 247 69.2
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 5.6e-83 311.6 245 65.3
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 9.6e-83 310.8 247 65.2
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 9.6e-83 310.8 244 67.6
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.8e-82 309.3 218 74.8
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 5.2e-81 305.1 261 62.5
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 3.2e-78 295.8 248 64.9
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 3.2e-78 295.8 248 64.5
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 1.6e-77 293.5 245 64.9
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 1.6e-77 293.5 253 62.8
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 3.5e-77 292.4 248 64.5
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 1.0e-76 290.8 247 62.3
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 1.1e-73 280.8 253 60.9
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 2.4e-73 279.6 248 61.7
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.6e-69 266.9 220 65.9
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 1.1e-67 260.8 253 55.7
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 5.6e-67 258.5 244 57.4
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 9.6e-67 257.7 260 55.8
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.3e-66 257.3 265 55.8
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 1.6e-66 256.9 247 59.1
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.7e-63 246.9 246 56.9
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 1.9e-62 243.4 226 60.6
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 1.9e-62 243.4 226 60.6
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 2.4e-62 243.0 133 93.2
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 3.5e-61 239.2 201 67.2
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 2.3e-60 236.5 262 53.1
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 8.1e-58 228.0 195 64.1
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.0e-56 223.4 180 67.2
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 3.4e-56 222.6 258 49.6
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 4.9e-55 218.8 201 59.7
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 4.9e-55 218.8 139 78.4
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 8.4e-55 218.0 261 52.9
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 4.6e-53 212.2 216 56.0
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.9e-51 206.8 167 67.1
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 1.0e-44 184.5 140 70.0
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 5.1e-44 182.2 154 63.6
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 5.1e-44 182.2 183 59.6
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 4.3e-43 179.1 136 71.3
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.1e-41 174.5 209 51.7
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.1e-41 172.9 235 47.2
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 6.9e-41 171.8 133 71.4
VMungo1127G1632 Vigna mungo HOM05D003241 ORTHO05D003812 1.1e-35 154.5 95 81.1
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 1.5e-35 154.1 210 47.6
Hma1.2p1_0765F.1_g215090 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 2.0e-35 153.7 181 51.4
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 2.0e-35 153.7 247 40.9
FAN07G0113 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.7e-35 151.4 89 83.1
Hma1.2p1_0358F.1_g134820 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 1.7e-34 150.6 181 50.3
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 4.8e-34 149.1 203 47.8
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.1e-33 146.4 135 62.2
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.5e-32 144.1 151 55.0
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.8e-31 139.4 234 40.2
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.6e-29 132.9 182 46.7
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.4e-28 131.0 145 47.6
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 1.4e-28 131.0 160 50.0
SalBow6G5333 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.8e-28 130.6 87 75.9
SalBow6G1591 Salvia bowleyana HOM05D003241 ORTHO05D003812 3.9e-28 129.4 87 74.7
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 1.8e-25 120.6 124 55.6
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 4.1e-25 119.4 95 62.1
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 4.5e-24 115.9 181 38.7
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.5e-24 115.9 186 45.7
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 2.9e-23 113.2 87 66.7
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 3.8e-23 112.8 143 48.3
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 5.0e-23 112.5 149 46.3
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 5.0e-23 112.5 117 54.7
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.6e-19 100.1 86 60.5
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.6e-19 100.1 86 60.5
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 3.3e-19 99.8 158 41.8
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 9.7e-19 98.2 296 28.7
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.1e-17 94.7 151 39.1
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 1.8e-17 94.0 158 40.5
Thhalv10022422m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 4.1e-17 92.8 141 40.4
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.3e-17 92.4 77 63.6
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 7.0e-17 92.0 187 36.9
AagrBONN_evm.TU.Sc2ySwM_344.222 Anthoceros agrestis HOM05D003241 ORTHO05D003812 9.1e-17 91.7 85 54.1
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 9.1e-17 91.7 98 57.1
QL03p023912 Quercus lobata HOM05D003241 ORTHO05D003812 9.1e-17 91.7 43 97.7
QL09p029974 Quercus lobata HOM05D003241 ORTHO05D003812 9.1e-17 91.7 43 97.7
QL93p0157_0007 Quercus lobata HOM05D003241 ORTHO05D003812 9.1e-17 91.7 43 97.7
Lj1A444G10 Lonicera japonica HOM05D003241 ORTHO05D003812 3.5e-16 89.7 155 40.6
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.0e-15 88.2 184 34.2
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 1.3e-15 87.8 140 45.0
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 5.0e-15 85.9 236 31.4
Lju445A0T12 Lonicera japonica HOM05D003241 ORTHO05D003812 1.1e-14 84.7 76 59.2
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 1.9e-14 84.0 151 38.4
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 7.2e-14 82.0 119 44.5
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 7.2e-14 82.0 181 35.4
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 4.7e-13 79.3 127 45.7
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.4e-12 77.8 127 45.7
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.8e-12 77.4 127 45.7
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 4.0e-12 76.3 107 44.9
Lj1A444T9 Lonicera japonica HOM05D003241 ORTHO05D003812 8.8e-12 75.1 69 58.0
CAN.G1652.14 Capsicum annuum HOM05D003241 ORTHO05D003812 1.3e-10 71.2 97 46.4
Carub.0003s1438 Capsella rubella HOM05D003241 ORTHO05D003812 2.8e-10 70.1 130 39.2
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.7e-10 69.7 187 32.1
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-09 68.2 61 55.7
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.8e-09 67.4 188 32.4
Actinidia17691 Actinidia chinensis HOM05D003241 ORTHO05D003812 9.4e-06 55.1 53 54.7


User provided reference genes

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