Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 7.0e-159 563.9 290 100.0
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 4.8e-107 391.7 221 94.6
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 1.4e-106 390.2 221 94.1
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 2.0e-105 386.3 221 92.3
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 7.4e-100 367.9 251 81.7
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 1.2e-97 360.5 221 85.1
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 1.9e-95 353.2 224 81.2
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 2.5e-95 352.8 221 81.9
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.2e-94 350.5 221 79.6
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 2.3e-93 346.3 221 79.2
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 2.3e-93 346.3 221 79.2
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 3.0e-93 345.9 220 79.1
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 3.0e-93 345.9 220 79.1
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 3.0e-93 345.9 221 79.6
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 8.8e-93 344.4 221 79.2
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 1.1e-92 344.0 220 80.9
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 2.0e-92 343.2 220 80.0
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 2.0e-92 343.2 220 80.5
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 7.4e-92 341.3 220 80.0
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 9.7e-92 340.9 220 80.0
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 1.3e-91 340.5 220 80.0
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.7e-91 339.0 221 79.6
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 1.4e-90 337.0 220 80.0
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 1.4e-90 337.0 221 80.1
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 1.4e-90 337.0 220 79.1
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 1.8e-90 336.7 220 78.6
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 2.4e-90 336.3 220 78.2
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 4.1e-90 335.5 220 80.0
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 5.3e-90 335.1 220 77.7
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 1.5e-89 333.6 220 78.2
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 1.5e-89 333.6 220 78.2
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 2.0e-89 333.2 220 78.2
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 3.4e-89 332.4 221 78.3
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 4.5e-89 332.0 222 77.9
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 7.7e-89 331.3 221 76.9
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.2e-88 329.7 220 78.6
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 3.8e-88 328.9 221 77.8
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 8.5e-88 327.8 221 77.8
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 1.1e-87 327.4 221 78.7
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 1.4e-87 327.0 222 77.0
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 1.2e-86 323.9 220 75.5
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 6.1e-86 321.6 219 76.7
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.8e-85 320.1 219 76.3
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.3e-85 319.7 220 75.5
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 3.0e-85 319.3 209 79.4
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 3.9e-85 318.9 219 74.9
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.1e-84 317.4 224 71.4
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.5e-84 317.0 220 75.5
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 4.4e-84 315.5 219 74.0
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 1.7e-83 313.5 220 73.2
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 2.2e-83 313.2 201 79.1
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 2.2e-83 313.2 219 73.5
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 6.3e-83 311.6 221 77.4
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.1e-82 310.8 219 72.6
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 1.8e-82 310.1 224 73.2
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 5.3e-82 308.5 220 71.8
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 7.0e-82 308.1 224 73.2
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 9.1e-82 307.8 222 73.0
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.6e-81 307.0 219 73.1
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 2.6e-81 306.2 220 71.4
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 2.6e-81 306.2 220 71.4
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 2.6e-81 306.2 220 71.4
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 3.5e-81 305.8 220 71.8
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 5.9e-81 305.1 220 71.4
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 7.7e-81 304.7 224 72.3
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 1.7e-80 303.5 220 70.9
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 9.4e-79 297.7 220 71.4
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 2.7e-78 296.2 207 75.8
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 4.7e-78 295.4 220 69.5
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.0e-77 292.7 224 71.9
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 2.6e-76 289.7 221 70.6
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 9.7e-76 287.7 220 69.1
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 1.3e-75 287.3 222 69.8
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 1.3e-75 287.3 222 69.8
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 2.8e-75 286.2 220 69.1
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 4.8e-75 285.4 220 69.5
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.1e-74 284.3 220 69.5
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 1.4e-74 283.9 220 70.9
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 9.1e-74 281.2 224 70.5
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.7e-73 279.6 224 68.8
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 7.7e-73 278.1 220 66.4
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.3e-72 277.3 224 68.3
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 1.7e-72 276.9 224 68.8
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.7e-72 276.9 224 68.8
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 5.0e-72 275.4 220 65.9
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 6.5e-72 275.0 221 66.5
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.5e-71 273.9 221 66.5
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 4.2e-71 272.3 224 68.3
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.7e-70 269.6 231 67.1
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 2.3e-69 266.5 220 65.0
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 2.3e-69 266.5 221 67.0
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 5.2e-69 265.4 220 64.1
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 1.5e-68 263.8 220 63.6
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 2.0e-68 263.5 223 66.8
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 3.4e-68 262.7 221 63.3
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 7.5e-68 261.5 225 66.7
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 1.7e-67 260.4 219 66.7
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 8.3e-67 258.1 221 63.3
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 2.4e-66 256.5 221 62.4
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 4.1e-66 255.8 220 63.2
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 7.0e-66 255.0 220 63.2
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 2.0e-65 253.4 220 64.5
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 1.0e-64 251.1 220 62.3
MBI14_g36867_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 2.2e-64 250.0 183 72.1
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 5.0e-64 248.8 220 62.3
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 5.0e-64 248.8 220 60.9
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 5.5e-63 245.4 220 58.6
TPR.G37958 Trifolium pratense HOM05D003241 ORTHO05D003812 8.0e-62 241.5 221 64.3
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 6.8e-61 238.4 224 58.0
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 1.2e-60 237.7 229 59.4
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 2.4e-58 229.9 175 70.9
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.1e-58 229.6 220 58.6
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 3.1e-58 229.6 221 57.5
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 2.0e-57 226.9 220 58.2
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 5.0e-56 222.2 171 67.3
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 5.0e-56 222.2 171 67.3
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 1.4e-53 214.2 220 55.0
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 1.8e-53 213.8 219 54.8
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.1e-50 204.5 151 70.2
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 5.4e-50 202.2 249 49.4
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 4.3e-47 192.6 209 51.2
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 3.6e-46 189.5 215 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 8.0e-46 188.3 222 50.9
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 3.1e-45 186.4 221 49.3
SHI33105 Sapria himalayana HOM05D000743 ORTHO05D000580 2.7e-41 173.3 187 52.9
Lj1A444T9 Lonicera japonica HOM05D003241 ORTHO05D003812 5.0e-40 169.1 174 55.7
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 1.5e-39 167.5 225 48.0
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 4.3e-39 166.0 204 49.0
Lju445A0T12 Lonicera japonica HOM05D003241 ORTHO05D003812 3.7e-35 152.9 174 53.4
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 2.8e-30 136.7 216 44.4
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.8e-27 126.3 81 75.3
Solyc11g008460.1 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.9e-23 114.0 69 79.7
Sopen06g019980 Solanum pennellii HOM05D003241 ORTHO05D003812 8.1e-22 108.6 69 72.5
CARHR196420 Cardamine hirsuta HOM05D003241 ORTHO05D003812 5.2e-21 105.9 96 62.5
Eucgr.G01007 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.2e-20 104.8 130 53.8
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 1.3e-19 101.3 222 36.9
QL04p053119 Quercus lobata HOM05D003241 ORTHO05D003812 2.9e-19 100.1 57 91.2
QL06p040345 Quercus lobata HOM05D003241 ORTHO05D003812 2.9e-19 100.1 57 91.2
RcHm_v2.0_Chr1g0362541 Rosa chinensis HOM05D003241 ORTHO05D003812 2.4e-18 97.1 53 90.6
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 6.0e-17 92.4 158 41.1
Hma1.2p1_0148F.1_g066050 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 3.0e-16 90.1 80 63.8
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.3e-14 84.7 220 32.3
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 1.3e-14 84.7 240 32.5
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 8.1e-14 82.0 236 33.5
Haze_07845 Corylus avellana HOM05D003241 ORTHO05D003812 1.1e-10 71.6 38 86.8
Eucgr.K00104 Eucalyptus grandis HOM05D002350 ORTHO05D000091 5.4e-10 69.3 69 59.4
QL05p063869 Quercus lobata HOM05D003241 ORTHO05D003812 1.9e-07 60.8 71 47.9
AagrBONN_evm.TU.Sc2ySwM_344.222 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.6e-06 57.8 77 45.5
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.6e-06 57.8 77 45.5


User provided reference genes

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