Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.5e-160 569.7 329 100.0
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 1.7e-124 449.9 329 71.4
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 6.6e-121 438.0 335 68.7
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.4e-115 420.2 223 88.3
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 4.1e-115 418.7 223 87.0
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 9.2e-115 417.5 223 86.5
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 3.5e-114 415.6 223 87.4
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.5e-114 415.6 223 86.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 3.5e-114 415.6 221 88.2
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 4.6e-114 415.2 222 86.5
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 6.0e-114 414.8 223 87.9
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 7.8e-114 414.5 223 87.4
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.0e-113 414.1 330 71.5
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.3e-113 413.7 334 69.2
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.7e-113 413.3 223 86.5
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.7e-113 413.3 334 76.9
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.7e-113 413.3 223 87.4
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.7e-113 413.3 223 85.7
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 2.3e-113 412.9 223 87.4
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 3.0e-113 412.5 223 87.4
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 3.0e-113 412.5 223 87.4
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 3.0e-113 412.5 223 86.1
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 5.1e-113 411.8 223 87.0
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 5.1e-113 411.8 223 87.4
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 6.6e-113 411.4 338 63.6
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 8.7e-113 411.0 223 87.0
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.5e-112 410.2 223 87.0
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.5e-112 410.2 223 87.0
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.9e-112 409.8 223 86.1
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 5.6e-112 408.3 325 66.8
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 9.6e-112 407.5 223 86.1
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.2e-111 407.1 333 64.3
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 1.2e-111 407.1 330 65.8
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.6e-111 406.8 223 87.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.8e-111 406.0 223 84.3
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 3.6e-111 405.6 334 65.9
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 6.2e-111 404.8 223 84.8
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 8.1e-111 404.4 223 84.3
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.1e-110 404.1 320 69.7
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.4e-110 403.7 223 83.4
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 1.4e-110 403.7 223 83.9
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.8e-110 403.3 244 80.3
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 4.0e-110 402.1 326 65.6
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 6.9e-110 401.4 333 64.6
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 9.0e-110 401.0 219 85.4
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.2e-109 400.6 223 82.5
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 1.5e-109 400.2 219 85.4
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 2.0e-109 399.8 324 65.4
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 2.6e-109 399.4 223 83.0
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 2.6e-109 399.4 223 83.4
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 3.4e-109 399.1 223 83.4
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.4e-109 398.7 328 67.1
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 5.8e-109 398.3 329 64.7
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 9.9e-109 397.5 219 85.4
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 9.9e-109 397.5 223 83.0
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 9.9e-109 397.5 223 81.2
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.3e-108 397.1 223 83.4
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.3e-108 397.1 335 63.3
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.3e-108 397.1 339 65.2
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 1.3e-108 397.1 223 83.0
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.7e-108 396.7 223 83.4
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.2e-108 396.4 223 83.4
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.8e-108 395.6 330 67.3
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 4.9e-108 395.2 223 82.1
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 4.9e-108 395.2 311 65.0
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 6.4e-108 394.8 221 81.4
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 6.4e-108 394.8 332 77.1
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 6.4e-108 394.8 331 64.0
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-107 394.0 331 68.3
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.9e-107 393.3 332 63.3
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 2.4e-107 392.9 328 67.7
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 2.4e-107 392.9 223 82.5
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 3.2e-107 392.5 332 62.7
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 7.1e-107 391.3 331 65.0
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 7.1e-107 391.3 223 80.3
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 4.6e-106 388.7 316 65.5
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.3e-105 387.1 223 82.1
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 5.1e-105 385.2 219 82.2
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.8e-103 378.6 211 83.9
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.4e-102 377.1 216 81.5
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.8e-102 376.7 306 63.4
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.2e-101 374.0 331 60.4
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.7e-100 370.2 205 85.9
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 6.0e-98 361.7 221 78.7
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 8.1e-95 351.3 309 61.5
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 2.0e-93 346.7 180 89.4
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 1.2e-90 337.4 222 72.5
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.2e-90 337.4 223 69.5
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.2e-90 337.4 223 69.5
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 7.9e-90 334.7 223 69.1
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.6e-82 310.5 258 61.2
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 3.5e-82 309.3 219 62.6
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 3.9e-81 305.8 473 42.7
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 2.5e-80 303.1 170 84.1
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.6e-79 300.4 155 90.3
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 4.8e-79 298.9 153 88.9
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 6.9e-78 295.0 156 87.2
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 5.9e-77 292.0 219 60.7
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.5e-75 286.6 222 64.0
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 3.2e-75 286.2 166 81.3
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 7.2e-75 285.0 222 63.5
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 3.3e-72 276.2 219 60.3
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 3.7e-71 272.7 223 63.2
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 3.9e-65 252.7 143 84.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 9.1e-62 241.5 205 55.6
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.5e-60 235.3 181 63.5
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 8.0e-58 228.4 220 58.2
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.0e-57 228.0 116 87.9
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.8e-57 227.3 228 65.8
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.7e-55 219.5 174 63.2
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.0e-40 170.6 127 68.5
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 1.6e-37 161.0 95 77.9
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 1.7e-36 157.5 80 88.8
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 9.5e-35 151.8 174 40.2
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.2e-34 151.4 108 69.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.2e-31 140.6 155 49.7
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 9.5e-27 125.2 62 90.3
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.6e-21 107.8 78 66.7
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 5.0e-20 102.8 105 52.4
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.6e-13 81.3 43 90.7
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-09 67.8 68 52.9
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-09 67.8 68 52.9


User provided reference genes

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