Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 4.4e-50 201.1 107 100.0
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 9.9e-34 146.7 82 86.6
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 7.1e-32 140.6 82 82.9
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 1.2e-31 139.8 82 82.9
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.6e-31 139.4 82 82.9
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 2.1e-31 139.0 81 82.7
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 3.5e-31 138.3 82 81.7
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 6.0e-31 137.5 82 81.7
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 2.3e-30 135.6 81 81.5
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.0e-30 135.2 82 80.5
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 5.1e-30 134.4 82 80.5
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 6.6e-30 134.0 81 81.5
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 6.6e-30 134.0 82 81.7
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 1.5e-29 132.9 82 76.8
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 1.5e-29 132.9 79 83.5
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 1.9e-29 132.5 82 80.5
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 4.3e-29 131.3 82 75.6
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.3e-29 131.3 82 78.0
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 5.6e-29 131.0 82 78.0
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 7.3e-29 130.6 82 79.3
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.3e-28 129.8 82 76.8
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 1.6e-28 129.4 82 76.8
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 1.6e-28 129.4 78 78.2
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 8.1e-28 127.1 81 74.1
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 1.1e-27 126.7 78 80.8
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 1.4e-27 126.3 80 76.2
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 3.1e-27 125.2 81 72.8
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 4.0e-27 124.8 82 75.6
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 9.0e-27 123.6 82 70.7
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 4.5e-26 121.3 82 69.5
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 2.9e-25 118.6 82 69.5
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 1.6e-23 112.8 82 67.1
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.0e-22 110.2 67 82.1
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 1.8e-22 109.4 78 67.9
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.9e-21 105.9 78 66.7
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 8.1e-20 100.5 82 63.4
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 1.6e-15 86.3 50 84.0
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 8.7e-14 80.5 83 54.2
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 8.7e-14 80.5 40 95.0
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.3e-13 78.6 46 82.6
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.3e-13 78.6 46 82.6
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 9.6e-13 77.0 45 82.2
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 9.6e-13 77.0 46 80.4
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.6e-12 76.3 45 80.0
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 8.2e-12 73.9 46 76.1
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 1.4e-11 73.2 67 62.7
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 4.0e-11 71.6 40 85.0
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 5.3e-11 71.2 39 84.6
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 6.9e-11 70.9 40 80.0
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 9.0e-11 70.5 40 85.0
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 9.0e-11 70.5 35 94.3
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 1.2e-10 70.1 41 78.0
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 2.6e-10 68.9 39 79.5
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 3.4e-10 68.6 39 82.1
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 4.5e-10 68.2 41 78.0
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.0e-09 67.0 36 86.1
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 1.0e-09 67.0 41 78.0
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 1.7e-09 66.2 46 73.9
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 2.9e-09 65.5 35 85.7
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 6.5e-09 64.3 36 80.6
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 6.5e-09 64.3 38 73.7
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 6.5e-09 64.3 38 76.3
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 8.4e-09 63.9 37 83.8
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 1.1e-08 63.5 88 45.5
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 1.1e-08 63.5 35 80.0
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 5.5e-08 61.2 39 71.8
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 5.5e-08 61.2 34 85.3
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 5.5e-08 61.2 31 90.3
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.2e-07 60.1 37 70.3
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.6e-07 59.7 35 71.4
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 1.6e-07 59.7 33 81.8
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 1.6e-07 59.7 52 55.8
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 2.1e-07 59.3 33 81.8
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 2.7e-07 58.9 35 74.3
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 3.5e-07 58.5 37 73.0
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 4.6e-07 58.2 33 78.8
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 4.6e-07 58.2 34 82.4
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 6.0e-07 57.8 31 87.1
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 7.9e-07 57.4 33 78.8
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 7.9e-07 57.4 33 78.8
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 7.9e-07 57.4 33 78.8
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 7.9e-07 57.4 33 78.8
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.0e-06 57.0 31 83.9
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.0e-06 57.0 31 83.9
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 1.0e-06 57.0 33 78.8
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 1.8e-06 56.2 33 78.8
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.8e-06 56.2 82 41.5
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 2.3e-06 55.8 36 72.2
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.3e-06 55.8 36 72.2
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 3.0e-06 55.5 33 78.8
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 3.0e-06 55.5 30 80.0
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.9e-06 55.1 34 73.5
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 3.9e-06 55.1 31 80.6
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 5.1e-06 54.7 34 73.5
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 6.7e-06 54.3 31 80.6
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 8.7e-06 53.9 35 68.6


User provided reference genes

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