Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.8e-48 194.9 94 100.0
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 6.0e-19 97.4 50 94.0
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.9e-17 92.4 56 76.8
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 2.2e-16 89.0 50 82.0
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 2.2e-16 89.0 50 84.0
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.4e-15 86.3 50 80.0
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 5.3e-15 84.3 50 76.0
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.2e-14 83.2 50 74.0
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.2e-14 83.2 50 76.0
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 1.5e-14 82.8 50 78.0
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.0e-14 82.4 50 76.0
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 3.4e-14 81.6 50 74.0
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 5.9e-14 80.9 50 74.0
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.7e-14 80.5 50 72.0
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.0e-13 80.1 50 72.0
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.3e-13 79.7 50 72.0
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.7e-13 79.3 50 72.0
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 2.2e-13 79.0 50 72.0
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 2.9e-13 78.6 50 70.0
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 3.8e-13 78.2 50 70.0
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 3.8e-13 78.2 50 70.0
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 3.8e-13 78.2 50 76.0
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 3.8e-13 78.2 50 74.0
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 3.8e-13 78.2 50 72.0
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 5.0e-13 77.8 50 72.0
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 5.0e-13 77.8 50 72.0
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 5.0e-13 77.8 50 72.0
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 5.0e-13 77.8 50 72.0
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 6.5e-13 77.4 50 72.0
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 6.5e-13 77.4 50 68.0
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 8.5e-13 77.0 50 70.0
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 8.5e-13 77.0 50 70.0
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 8.5e-13 77.0 50 70.0
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.1e-12 76.6 50 72.0
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.1e-12 76.6 50 70.0
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.1e-12 76.6 50 70.0
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.1e-12 76.6 50 70.0
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 1.1e-12 76.6 50 70.0
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.1e-12 76.6 50 70.0
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 1.4e-12 76.3 50 70.0
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.9e-12 75.9 50 66.0
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.9e-12 75.9 50 70.0
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 1.9e-12 75.9 50 70.0
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 1.9e-12 75.9 50 68.0
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 2.5e-12 75.5 50 70.0
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 2.5e-12 75.5 50 70.0
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 2.5e-12 75.5 50 70.0
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 2.5e-12 75.5 50 70.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 2.5e-12 75.5 50 68.0
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 2.5e-12 75.5 50 66.0
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 3.2e-12 75.1 50 68.0
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 3.2e-12 75.1 50 70.0
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 3.2e-12 75.1 50 70.0
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 4.2e-12 74.7 50 72.0
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 68.0
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 68.0
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 68.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 68.0
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 70.0
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 70.0
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 70.0
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 70.0
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 70.0
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 4.2e-12 74.7 50 70.0
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 5.5e-12 74.3 50 68.0
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 7.2e-12 73.9 50 68.0
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 7.2e-12 73.9 50 60.0
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.2e-12 73.9 50 66.0
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 7.2e-12 73.9 50 64.0
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 7.2e-12 73.9 50 70.0
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 7.2e-12 73.9 50 64.0
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 7.2e-12 73.9 50 70.0
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 7.2e-12 73.9 50 64.0
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 7.2e-12 73.9 50 66.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 9.4e-12 73.6 50 66.0
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 9.4e-12 73.6 50 66.0
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.2e-11 73.2 50 68.0
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 1.2e-11 73.2 50 68.0
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.2e-11 73.2 50 66.0
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.2e-11 73.2 50 66.0
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.2e-11 73.2 50 70.0
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.2e-11 73.2 50 68.0
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.6e-11 72.8 50 66.0
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.1e-11 72.4 50 64.0
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 2.1e-11 72.4 50 66.0
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 2.1e-11 72.4 50 62.0
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 2.1e-11 72.4 50 62.0
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.7e-11 72.0 50 64.0
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 3.6e-11 71.6 50 66.0
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 4.6e-11 71.2 50 66.0
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 6.1e-11 70.9 50 66.0
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 6.1e-11 70.9 50 56.0
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 6.1e-11 70.9 50 60.0
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.3e-10 68.9 50 66.0
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.9e-10 68.2 50 62.0
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.9e-10 68.2 50 62.0
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 3.9e-10 68.2 50 62.0
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 3.9e-10 68.2 50 62.0
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.1e-10 67.8 50 62.0
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.1e-10 67.8 50 62.0
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.1e-10 67.8 50 62.0
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.1e-10 67.8 50 62.0
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.1e-10 67.8 50 62.0
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.1e-10 67.8 50 62.0
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.1e-10 67.8 50 62.0
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 5.1e-10 67.8 50 64.0
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 6.7e-10 67.4 50 62.0
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 8.8e-10 67.0 50 62.0
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 8.8e-10 67.0 50 62.0
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.1e-09 66.6 50 62.0
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.0e-09 65.9 50 52.0
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-09 65.9 50 60.0
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.7e-09 64.3 50 60.0
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 9.7e-09 63.5 50 58.0
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 1.7e-08 62.8 50 56.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 4.8e-08 61.2 50 56.0
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.4e-07 59.7 40 67.5
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 9.1e-07 57.0 50 52.0
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 2.0e-06 55.8 71 38.0
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 2.6e-06 55.5 42 61.9
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 4.5e-06 54.7 40 62.5


User provided reference genes

Program Settings