Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 0.0e+00 1946.0 1120 100.0
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1535.8 1129 77.0
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1525.8 1125 77.2
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 0.0e+00 1466.4 1121 75.1
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1297.0 1127 64.3
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1294.3 1121 63.6
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1263.4 1122 62.7
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1261.1 1124 62.5
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 0.0e+00 1255.4 1192 62.3
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1248.8 1178 61.9
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 0.0e+00 1245.7 1121 62.6
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1234.6 1127 63.0
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1226.8 1126 64.3
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1223.0 1186 61.2
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1219.5 1130 61.0
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1204.9 1158 60.3
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 0.0e+00 1203.3 1126 61.2
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 0.0e+00 1199.1 1122 60.8
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 0.0e+00 1198.7 1122 60.9
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1197.2 1124 60.2
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 0.0e+00 1196.0 1124 60.2
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1195.6 1124 60.2
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 0.0e+00 1195.3 1122 60.8
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1194.9 1182 59.5
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1193.3 1127 61.2
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 0.0e+00 1192.6 1158 59.8
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1184.9 1131 61.1
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1179.1 1140 60.2
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 0.0e+00 1178.3 1140 60.1
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 0.0e+00 1178.3 1124 60.1
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 0.0e+00 1177.9 1148 59.6
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 0.0e+00 1176.4 1147 59.6
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1176.4 1125 63.7
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 0.0e+00 1172.5 1132 59.1
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 0.0e+00 1170.2 1146 59.9
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 0.0e+00 1170.2 1060 63.1
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1165.2 1145 63.2
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 0.0e+00 1162.9 1215 56.3
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1162.1 1123 61.2
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1161.0 1123 60.8
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1158.3 1123 61.0
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 0.0e+00 1152.9 1124 59.8
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1150.6 1114 58.7
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1138.6 1158 56.7
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1135.9 1133 58.6
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1130.2 1169 58.9
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1113.2 1140 58.0
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 0.0e+00 1109.0 1013 62.6
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1090.1 1122 57.0
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 0.0e+00 1079.3 1173 55.4
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 0.0e+00 1078.9 1112 58.2
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 3.2e-308 1062.0 1134 56.7
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.3e-306 1056.6 1144 55.5
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 9.6e-305 1050.4 1122 56.4
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 4.8e-304 1048.1 1132 56.6
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 2.0e-302 1042.7 1202 52.1
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 2.0e-302 1042.7 1124 56.4
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 6.0e-299 1031.2 792 71.6
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.3e-298 1029.2 1140 53.5
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 2.9e-293 1012.3 1122 54.2
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 3.2e-292 1008.8 1144 53.0
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 3.7e-288 995.3 1199 56.3
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.2e-284 981.9 1113 53.1
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 4.6e-283 978.4 1089 56.1
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 7.9e-283 977.6 1127 54.7
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 5.1e-282 974.9 1249 48.9
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 4.1e-279 965.3 1104 54.7
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 6.9e-279 964.5 1123 52.4
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 9.0e-279 964.1 1113 52.9
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.0e-277 960.7 1137 51.6
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.0e-277 960.7 1137 51.6
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 1.3e-277 960.3 1132 52.0
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 6.5e-277 958.0 1164 51.0
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 1.4e-276 956.8 1101 53.6
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 7.1e-276 954.5 1110 52.3
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 2.7e-275 952.6 1134 50.9
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 6.1e-275 951.4 896 62.2
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.1e-273 947.2 1118 53.4
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 6.3e-272 941.4 594 81.6
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 5.0e-269 931.8 1132 50.1
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 3.2e-268 929.1 1148 51.9
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 1.4e-266 923.7 1133 50.2
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 5.3e-263 911.8 1100 50.6
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 5.3e-263 911.8 836 60.2
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.1e-257 894.0 1130 50.9
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 2.8e-256 889.4 720 68.6
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 3.1e-255 885.9 892 57.3
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 1.3e-253 880.6 1148 48.3
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 1.3e-253 880.6 1148 48.3
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 9.4e-252 874.4 839 59.1
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 6.7e-250 868.2 1164 51.7
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 2.4e-247 859.8 1105 53.6
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.2e-241 840.9 1142 47.7
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 1.5e-241 840.5 1132 48.0
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 5.7e-241 838.6 627 71.1
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 7.5e-241 838.2 1142 47.5
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.7e-238 829.7 958 52.7
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 4.5e-238 828.9 971 54.0
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 4.2e-236 822.4 1183 48.6
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 9.4e-236 821.2 909 54.1
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 9.4e-236 821.2 909 54.1
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 3.6e-235 819.3 1136 48.5
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 4.0e-234 815.8 1140 46.6
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 2.8e-232 809.7 1139 46.6
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 3.7e-232 809.3 1138 46.7
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 4.5e-230 802.4 1051 48.4
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 1.0e-229 801.2 1145 46.8
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.5e-220 770.8 702 62.1
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.5e-209 734.2 855 54.4
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 4.1e-199 699.5 522 69.7
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.6e-195 686.4 845 50.3
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 6.4e-192 675.6 1066 43.2
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.3e-187 661.4 856 48.1
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 1.2e-185 654.8 861 47.4
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 7.6e-177 625.5 862 47.3
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 5.6e-172 609.4 877 45.3
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 2.9e-168 597.0 427 73.5
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.4e-162 577.4 1200 38.4
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.6e-155 554.7 815 45.2
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 7.7e-153 545.8 364 76.1
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 3.2e-151 540.4 913 41.6
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.8e-149 534.6 364 75.3
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 9.7e-140 502.3 747 45.6
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 4.8e-139 500.0 597 50.8
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 6.7e-133 479.6 919 38.0
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.1e-119 435.6 355 64.8
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.5e-119 435.3 347 68.9
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 6.1e-118 429.9 729 42.0
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 9.8e-116 422.5 332 69.6
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 9.5e-95 352.8 640 39.7
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.4e-93 349.0 471 47.8
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 3.7e-91 340.9 405 55.8
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 6.2e-86 323.6 375 53.1
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.8e-69 268.9 257 57.6
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.9e-67 261.5 374 42.5
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 8.4e-67 260.0 387 45.2
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 8.4e-67 260.0 649 35.4
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 8.4e-67 260.0 649 35.4
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.6e-62 245.7 350 43.7
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 2.4e-61 241.9 300 45.3
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.6e-57 229.2 166 72.3
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 6.5e-51 207.2 158 65.2
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 2.5e-50 205.3 622 29.7
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 3.2e-50 204.9 373 41.8
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.0e-48 199.9 156 66.0
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 8.7e-48 196.8 144 73.6
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.8e-45 189.1 132 67.4
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.5e-44 186.0 184 56.5
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.7e-43 182.6 154 59.7
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.2e-42 178.3 113 79.6
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.3e-38 166.4 399 36.6
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 9.1e-37 160.2 276 36.2
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 2.1e-33 149.1 104 72.1
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 2.7e-33 148.7 138 58.0
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.3e-27 129.8 75 82.7
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 8.5e-27 127.1 75 81.3
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 7.2e-26 124.0 85 71.8
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 2.6e-23 115.5 571 28.0
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 7.7e-20 104.0 159 40.3
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.6e-17 96.3 101 52.5
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 2.7e-17 95.5 86 54.7
Lalb_Chr02g0143861 Lupinus albus HOM05D000283 ORTHO05D005391 1.5e-15 89.7 116 49.1
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 7.5e-15 87.4 75 57.3
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 7.5e-15 87.4 45 88.9
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 6.3e-14 84.3 45 84.4
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.8e-13 82.8 52 69.2
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.0e-12 79.3 57 61.4
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 3.2e-10 72.0 42 92.9
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 2.7e-09 68.9 59 57.6
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 3.6e-09 68.6 107 46.7
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 6.1e-09 67.8 49 63.3
Psat1g094640 Pisum sativum HOM05D000467 ORTHO05D000379 2.0e-07 62.8 53 60.4
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 7.5e-07 60.8 52 59.6
TWI38G0573 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 2.2e-06 59.3 360 22.8
Ca_24050_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 4.8e-06 58.2 233 27.9
Pp3c21_2030 Physcomitrium patens HOM05D002494 ORTHO05D002673 6.3e-06 57.8 309 25.2


User provided reference genes

Program Settings