Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p037571 Quercus lobata HOM05D008222 ORTHO05D010364 0.0e+00 1250.3 697 100.0
Haze_19673 Corylus avellana HOM05D008222 ORTHO05D010364 1.7e-230 803.1 700 66.6
Cfa016663 Carpinus fangiana HOM05D008222 ORTHO05D010364 3.6e-225 785.4 701 66.3
CiPaw.10G014900 Carya illinoinensis HOM05D008222 ORTHO05D010364 4.1e-197 692.2 702 62.4
Dinv31739 Davidia involucrata HOM05D008222 ORTHO05D010364 4.6e-172 609.0 707 58.4
COL.COLO4_29620 Corchorus olitorius HOM05D008222 ORTHO05D010364 3.1e-152 543.1 696 56.2
TAR633G2678 Trochodendron aralioides HOM05D008222 ORTHO05D010364 6.9e-152 542.0 715 52.2
Potri.006G205800 Populus trichocarpa HOM05D008222 ORTHO05D010364 9.3e-149 531.6 705 53.3
Ciclev10011213m.g Citrus clementina HOM05D008222 ORTHO05D010364 8.7e-147 525.0 702 49.0
Sabra06G0158800 Salix brachista HOM05D008222 ORTHO05D010364 4.3e-146 522.7 705 53.6
Thecc.05G099900 Theobroma cacao HOM05D008222 ORTHO05D010364 1.8e-144 517.3 698 47.9
TAR636G2750 Trochodendron aralioides HOM05D008222 ORTHO05D010364 3.1e-144 516.5 710 51.1
Cpa.g.sc104.69 Carica papaya HOM05D008222 ORTHO05D010364 2.2e-142 510.4 713 49.6
Manes.09G049300 Manihot esculenta HOM05D008222 ORTHO05D010364 2.9e-142 510.0 699 48.2
CiPaw.09G018200 Carya illinoinensis HOM05D008222 ORTHO05D010364 6.5e-142 508.8 588 55.1
GSVIVG01033924001 Vitis vinifera HOM05D008222 ORTHO05D010364 2.5e-141 506.9 705 49.2
Atru.chr8.1411 Acer truncatum HOM05D008222 ORTHO05D010364 1.5e-138 497.7 750 43.6
CSS0016714 Camellia sinensis var. sinensis HOM05D008222 ORTHO05D010364 1.7e-134 484.2 726 49.3
TWI77G0950 Tripterygium wilfordii HOM05D008222 ORTHO05D010364 1.4e-133 481.1 713 48.7
Nn6g34773 Nelumbo nucifera HOM05D008222 ORTHO05D010364 6.9e-128 462.2 709 50.8
FAN05G0780 Fragaria x ananassa HOM05D008222 ORTHO05D010364 6.7e-115 419.1 705 47.7
FAN05G0526 Fragaria x ananassa HOM05D008222 ORTHO05D010364 2.6e-114 417.2 705 47.0
FvH4_6g19810 Fragaria vesca HOM05D008222 ORTHO05D010364 1.7e-113 414.5 704 46.2
Glyma.02G200000 Glycine max HOM05D008222 ORTHO05D010364 1.7e-113 414.5 707 42.7
FAN02G2041 Fragaria x ananassa HOM05D008222 ORTHO05D010364 4.8e-113 412.9 705 47.1
FAN09G4126 Fragaria x ananassa HOM05D008222 ORTHO05D010364 4.8e-113 412.9 705 47.4
FAN14G0765 Fragaria x ananassa HOM05D008222 ORTHO05D010364 8.2e-113 412.1 704 46.2
Lj1C1035T2 Lonicera japonica HOM05D008222 ORTHO05D010364 4.1e-112 409.8 707 43.0
Glyma.10G076700 Glycine max HOM05D008222 ORTHO05D010364 1.5e-109 401.4 709 47.4
RcHm_v2.0_Chr3g0475181 Rosa chinensis HOM05D008222 ORTHO05D010364 5.5e-109 399.4 701 45.4
Lj5g0010690 Lotus japonicus HOM05D008222 ORTHO05D010364 1.2e-106 391.7 709 46.4
CANSAT64G2035 Cannabis sativa HOM05D008222 ORTHO05D010364 4.4e-106 389.8 769 39.7
Phvul.007G270200 Phaseolus vulgaris HOM05D008222 ORTHO05D010364 1.3e-105 388.3 702 42.9
MBI17_g16777_MAGBIO Magnolia biondii HOM05D008222 ORTHO05D010364 9.4e-101 372.1 714 45.5
MD12G1033800 Malus domestica HOM05D008222 ORTHO05D010364 1.6e-100 371.3 600 44.5
Oeu060355.1 Olea europaea HOM05D008222 ORTHO05D010364 1.7e-97 361.3 702 38.6
VMungo0720G0042 Vigna mungo HOM05D008222 ORTHO05D010364 5.4e-96 356.3 703 41.4
TPR.G8743 Trifolium pratense HOM05D008222 ORTHO05D010364 2.9e-94 350.5 714 38.2
Medtr1g058110 Medicago truncatula HOM05D008222 ORTHO05D010364 2.0e-87 327.8 709 44.0
DCAR_020725 Daucus carota HOM05D008222 ORTHO05D010364 5.9e-87 326.2 718 35.4
Oeu010753.1 Olea europaea HOM05D008222 ORTHO05D010364 5.9e-87 326.2 700 34.4
Oeu010756.1 Olea europaea HOM05D008222 ORTHO05D010364 5.6e-85 319.7 700 33.9
MSTRG.10386 Avicennia marina HOM05D008222 ORTHO05D010364 1.9e-72 278.1 699 32.8
AUR62006264 Chenopodium quinoa HOM05D008222 ORTHO05D010364 1.0e-70 272.3 737 32.3
Hund03869 Selenicereus undatus HOM05D008222 ORTHO05D010364 2.8e-68 264.2 779 33.9
EL10Ac7g16820 Beta vulgaris HOM05D008222 ORTHO05D010364 2.3e-67 261.2 816 34.1
Sc20g0006580 Simmondsia chinensis HOM05D008222 ORTHO05D010364 5.2e-67 260.0 702 38.2
Aqoxy4G02694 Aquilegia oxysepala HOM05D008222 ORTHO05D010364 8.9e-67 259.2 715 36.2
AUR62028514 Chenopodium quinoa HOM05D008222 ORTHO05D010364 2.1e-63 248.1 818 36.4
HPP92_009786 Vanilla planifolia HOM05D008222 ORTHO05D010364 1.7e-62 245.0 723 40.1
SGA_v2.0_scaffold184G40000 Striga asiatica HOM05D008222 ORTHO05D010364 2.6e-50 204.5 716 30.0
Oeu010754.1 Olea europaea HOM05D008222 ORTHO05D010364 3.4e-50 204.1 530 31.7
ATR0772G019 Amborella trichopoda HOM05D008222 ORTHO05D010364 8.4e-49 199.5 740 35.3
CDE08G0440 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 1.1e-48 199.1 697 37.7
CDE06G1815 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 2.7e-47 194.5 691 32.9
SEGI_05246 Sequoiadendron giganteum HOM05D008222 ORTHO05D010364 1.3e-38 165.6 766 32.9
ECA233G4923 Erigeron canadensis HOM05D008222 ORTHO05D010364 2.6e-34 151.4 749 30.3
Os02g0536400 Oryza sativa ssp. japonica HOM05D008222 ORTHO05D010364 9.9e-34 149.4 720 29.9
Lalb_Chr02g0154681 Lupinus albus HOM05D008222 ORTHO05D010364 2.8e-28 131.3 364 34.9
unitig_8.g3557 Utricularia gibba HOM05D008222 ORTHO05D010364 4.2e-24 117.5 248 34.3
Psat6g082000 Pisum sativum HOM05D008222 ORTHO05D010364 4.8e-12 77.4 126 41.3
AagrBONN_evm.TU.Sc2ySwM_368.1895 Anthoceros agrestis HOM05D008222 ORTHO05D010364 2.6e-10 71.6 54 57.4
Oeu017707.1 Olea europaea HOM05D008222 ORTHO05D010364 3.4e-10 71.2 158 34.2
CARHR132250 Cardamine hirsuta HOM05D002912 ORTHO05D003191 3.2e-08 64.7 83 41.0
Migut.L01640 Erythranthe guttata HOM05D002912 ORTHO05D003191 2.1e-07 62.0 73 42.5
C06p21470 Brassica napus HOM05D002912 ORTHO05D003191 3.6e-07 61.2 73 43.8
BolC6t37329H Brassica oleracea HOM05D002912 ORTHO05D003191 3.6e-07 61.2 73 43.8
BraA07t29849Z Brassica rapa HOM05D002912 ORTHO05D003191 3.6e-07 61.2 73 43.8
Lj1g0023882 Lotus japonicus HOM05D002912 ORTHO05D003191 3.6e-07 61.2 95 40.0
Nitab4.5_0000914g0130 Nicotiana tabacum HOM05D002912 ORTHO05D003191 3.6e-07 61.2 73 42.5
AL5G34420 Arabidopsis lyrata HOM05D002912 ORTHO05D003191 6.1e-07 60.5 73 43.8
AT3G53500 Arabidopsis thaliana HOM05D002912 ORTHO05D003191 6.1e-07 60.5 73 43.8
A03p20610 Brassica napus HOM05D002912 ORTHO05D003191 6.1e-07 60.5 111 35.1
BraA03t11303Z Brassica rapa HOM05D002912 ORTHO05D003191 6.1e-07 60.5 111 35.1
Carub.0004s1925 Capsella rubella HOM05D002912 ORTHO05D003191 6.1e-07 60.5 111 35.1
Carub.0005s2007 Capsella rubella HOM05D002912 ORTHO05D003191 6.1e-07 60.5 73 43.8
CARHR163400 Cardamine hirsuta HOM05D002912 ORTHO05D003191 6.1e-07 60.5 90 40.0
Lj8C93T4 Lonicera japonica HOM05D002912 ORTHO05D003191 6.1e-07 60.5 121 33.9
Sp5g08840 Schrenkiella parvula HOM05D002912 ORTHO05D003191 6.1e-07 60.5 73 43.8
DCAR_017750 Daucus carota HOM05D002912 ORTHO05D003191 7.9e-07 60.1 72 40.3
Thhalv10017989m.g Eutrema salsugineum HOM05D002912 ORTHO05D003191 7.9e-07 60.1 111 35.1
FvH4_7g20711 Fragaria vesca HOM05D002912 ORTHO05D003191 7.9e-07 60.1 73 42.5
RcHm_v2.0_Chr1g0364971 Rosa chinensis HOM05D002912 ORTHO05D003191 7.9e-07 60.1 73 42.5
Sp4g19660 Schrenkiella parvula HOM05D002912 ORTHO05D003191 7.9e-07 60.1 111 35.1
Ah.10g033180 Amaranthus hybridus HOM05D002912 ORTHO05D003191 1.0e-06 59.7 73 39.7
CSS0023495 Camellia sinensis var. sinensis HOM05D002912 ORTHO05D003191 1.0e-06 59.7 73 41.1
CSS0037078 Camellia sinensis var. sinensis HOM05D002912 ORTHO05D003191 1.0e-06 59.7 73 41.1
COL.COLO4_05801 Corchorus olitorius HOM05D002912 ORTHO05D003191 1.0e-06 59.7 73 42.5
Duzib106G1529 Durio zibethinus HOM05D002912 ORTHO05D003191 1.0e-06 59.7 73 42.5
Glyma.19G176200 Glycine max HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 38.9
Peaxi162Scf00015g00272 Petunia axillaris HOM05D002912 ORTHO05D003191 1.0e-06 59.7 73 42.5
Prupe.2G224200 Prunus persica HOM05D002912 ORTHO05D003191 1.0e-06 59.7 73 42.5
Sc20g0002330 Simmondsia chinensis HOM05D002912 ORTHO05D003191 1.0e-06 59.7 73 42.5
Gohir.A01G218600 Gossypium hirsutum HOM05D002912 ORTHO05D003191 1.4e-06 59.3 78 37.2
HanXRQChr08g0219481 Helianthus annuus HOM05D002912 ORTHO05D003191 1.4e-06 59.3 73 39.7
Rhsim03G0125000 Rhododendron simsii HOM05D002912 ORTHO05D003191 1.4e-06 59.3 73 41.1
MSTRG.5705 Avicennia marina HOM05D002912 ORTHO05D003191 1.8e-06 58.9 73 41.1
A05p39460 Brassica napus HOM05D002912 ORTHO05D003191 1.8e-06 58.9 113 33.6
C03p24210 Brassica napus HOM05D002912 ORTHO05D003191 1.8e-06 58.9 111 34.2
BolC3t14815H Brassica oleracea HOM05D002912 ORTHO05D003191 1.8e-06 58.9 111 34.2
BraA05t22727Z Brassica rapa HOM05D002912 ORTHO05D003191 1.8e-06 58.9 113 33.6
Thecc.10G063400 Theobroma cacao HOM05D002912 ORTHO05D003191 1.8e-06 58.9 73 41.1
MSTRG.19116 Avicennia marina HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 39.7
Duzib128G1379 Durio zibethinus HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 41.1
Gohir.D13G021300 Gossypium hirsutum HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 41.1
Gorai.012G091800 Gossypium raimondii HOM05D002912 ORTHO05D003191 2.3e-06 58.5 96 36.5
Gorai.013G024100 Gossypium raimondii HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 41.1
Os05g0120100 Oryza sativa ssp. japonica HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 43.8
Solyc05g054920.4 Solanum lycopersicum HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 41.1
Sopen05g033380 Solanum pennellii HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 41.1
PGSC0003DMG402023504 Solanum tuberosum HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 41.1
CiPaw.01G279300 Carya illinoinensis HOM05D002912 ORTHO05D003191 3.0e-06 58.2 73 41.1
Oeu037763.2 Olea europaea HOM05D002912 ORTHO05D003191 3.0e-06 58.2 96 37.5
PGR044G0052 Punica granatum HOM05D002912 ORTHO05D003191 3.0e-06 58.2 73 42.5
Atru.chr12.597 Acer truncatum HOM05D002912 ORTHO05D003191 3.9e-06 57.8 73 38.4
C05p58480 Brassica napus HOM05D002912 ORTHO05D003191 3.9e-06 57.8 113 32.7
BolC5t34499H Brassica oleracea HOM05D002912 ORTHO05D003191 3.9e-06 57.8 112 33.9
Duzib114G0437 Durio zibethinus HOM05D002912 ORTHO05D003191 3.9e-06 57.8 73 39.7
ECA238G4642 Erigeron canadensis HOM05D002912 ORTHO05D003191 3.9e-06 57.8 101 34.7
Migut.J00390 Erythranthe guttata HOM05D002912 ORTHO05D003191 3.9e-06 57.8 96 36.5
Gohir.A10G208800 Gossypium hirsutum HOM05D002912 ORTHO05D003191 3.9e-06 57.8 73 39.7
Gohir.D01G207400 Gossypium hirsutum HOM05D002912 ORTHO05D003191 3.9e-06 57.8 111 33.3
Gohir.D10G217100 Gossypium hirsutum HOM05D002912 ORTHO05D003191 3.9e-06 57.8 73 39.7
Gorai.011G242700 Gossypium raimondii HOM05D002912 ORTHO05D003191 3.9e-06 57.8 73 39.7
Lj3C975T6 Lonicera japonica HOM05D002912 ORTHO05D003191 3.9e-06 57.8 72 38.9
Oeu029116.1 Olea europaea HOM05D002912 ORTHO05D003191 3.9e-06 57.8 72 40.3
Os03g0285900 Oryza sativa ssp. japonica HOM05D002912 ORTHO05D003191 3.9e-06 57.8 96 38.5
Solyc09g005980.4 Solanum lycopersicum HOM05D002912 ORTHO05D003191 3.9e-06 57.8 72 38.9
PGSC0003DMG400023919 Solanum tuberosum HOM05D002912 ORTHO05D003191 3.9e-06 57.8 72 38.9
THA.LOC104806511 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 3.9e-06 57.8 111 34.2
A03p00880 Brassica napus HOM05D002912 ORTHO05D003191 5.1e-06 57.4 97 34.0
C03p01130 Brassica napus HOM05D002912 ORTHO05D003191 5.1e-06 57.4 97 34.0
BolC3t12672H Brassica oleracea HOM05D002912 ORTHO05D003191 5.1e-06 57.4 97 34.0
BraA03t09470Z Brassica rapa HOM05D002912 ORTHO05D003191 5.1e-06 57.4 97 34.0
Cfa017463 Carpinus fangiana HOM05D002912 ORTHO05D003191 5.1e-06 57.4 60 48.3
Oeu025612.1 Olea europaea HOM05D002912 ORTHO05D003191 5.1e-06 57.4 96 36.5
PSO339G4076 Papaver somniferum HOM05D002912 ORTHO05D003191 6.7e-06 57.0 73 41.1
PSO384G0018 Papaver somniferum HOM05D002912 ORTHO05D003191 6.7e-06 57.0 73 41.1
TPR.G36918 Trifolium pratense HOM05D002912 ORTHO05D003191 6.7e-06 57.0 100 36.0
Actinidia13846 Actinidia chinensis HOM05D002912 ORTHO05D003191 8.8e-06 56.6 73 38.4
Aa31LG5G22680 Aethionema arabicum HOM05D002912 ORTHO05D003191 8.8e-06 56.6 111 33.3
EL10Ac2g03513 Beta vulgaris HOM05D002912 ORTHO05D003191 8.8e-06 56.6 73 38.4
Carub.0003s0868 Capsella rubella HOM05D002912 ORTHO05D003191 8.8e-06 56.6 112 33.9
Ciclev10032170m.g Citrus clementina HOM05D002912 ORTHO05D003191 8.8e-06 56.6 73 37.0
Cc02_g08690 Coffea canephora HOM05D002912 ORTHO05D003191 8.8e-06 56.6 73 38.4
Cc06_g03240 Coffea canephora HOM05D002912 ORTHO05D003191 8.8e-06 56.6 73 38.4
ECA233G2654 Erigeron canadensis HOM05D002912 ORTHO05D003191 8.8e-06 56.6 75 37.3
ECA248G3238 Erigeron canadensis HOM05D002912 ORTHO05D003191 8.8e-06 56.6 73 39.7
Lalb_Chr20g0113051 Lupinus albus HOM05D002912 ORTHO05D003191 8.8e-06 56.6 75 37.3
MBI15_g36093_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 8.8e-06 56.6 86 30.2
TWI53G0760 Tripterygium wilfordii HOM05D002912 ORTHO05D003191 8.8e-06 56.6 111 33.3


User provided reference genes

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