Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 2161.3 1119 100.0
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1629.4 1156 76.1
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1321.2 1123 63.2
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1316.6 1114 65.5
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1298.5 1130 61.9
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 0.0e+00 1277.3 1132 62.8
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1272.3 1152 61.0
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1269.6 1125 60.4
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1260.7 1126 63.5
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 0.0e+00 1246.1 1193 59.1
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 0.0e+00 1245.7 1131 59.2
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 0.0e+00 1229.5 1128 60.7
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 0.0e+00 1228.4 1150 61.3
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 0.0e+00 1207.6 1130 60.5
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 0.0e+00 1197.2 1211 55.3
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 0.0e+00 1189.9 1141 59.6
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 0.0e+00 1185.6 1162 57.4
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 0.0e+00 1185.2 1147 57.5
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 0.0e+00 1170.6 1127 59.2
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 0.0e+00 1160.6 1244 55.5
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 0.0e+00 1154.4 1129 57.9
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 0.0e+00 1149.0 1124 56.8
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 0.0e+00 1139.0 1152 57.2
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 0.0e+00 1132.5 1142 58.3
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 0.0e+00 1132.1 1056 60.0
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 0.0e+00 1131.7 1245 53.4
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 0.0e+00 1113.2 1130 56.6
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 0.0e+00 1104.7 1215 54.2
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 1102.0 1232 52.6
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 0.0e+00 1098.2 986 60.5
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 0.0e+00 1096.3 986 60.6
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 0.0e+00 1089.7 1267 50.4
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 7.7e-312 1073.5 1064 57.3
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.1e-311 1072.0 1303 49.1
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 7.6e-310 1067.4 1108 54.0
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.7e-309 1066.2 646 81.6
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 6.9e-303 1044.3 1195 50.7
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 9.9e-302 1040.4 1132 53.1
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 7.8e-299 1030.8 1180 48.8
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 1.7e-298 1029.6 1134 51.7
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 5.6e-297 1024.6 1144 51.0
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 4.8e-296 1021.5 1091 53.6
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 3.8e-293 1011.9 1151 49.4
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.4e-292 1010.0 926 58.0
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.9e-292 1009.6 1154 51.6
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.6e-291 1006.5 1135 52.3
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.6e-291 1006.5 1250 49.9
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.1e-291 1006.1 1137 52.6
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 6.0e-291 1004.6 1162 50.5
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.0e-290 1003.8 1159 50.6
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 5.1e-290 1001.5 1190 48.2
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 6.7e-290 1001.1 953 56.9
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.9e-285 985.7 1169 49.8
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 3.8e-285 985.3 1245 48.7
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.1e-283 979.5 1260 47.9
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 1.3e-282 976.9 1099 51.4
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 1.3e-282 976.9 1109 51.1
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 3.0e-282 975.7 1157 49.7
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 3.0e-282 975.7 1150 49.5
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 5.1e-282 974.9 1176 49.3
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 6.7e-282 974.5 1099 51.0
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 8.7e-282 974.2 1163 49.9
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 4.8e-280 968.4 1180 47.6
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 4.8e-280 968.4 1259 49.0
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 8.2e-280 967.6 1173 47.7
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 2.4e-279 966.1 1135 49.4
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 4.5e-278 961.8 1191 46.8
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 5.8e-278 961.4 1186 47.3
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 3.5e-275 952.2 1185 48.9
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.3e-274 950.3 1138 48.0
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.8e-274 949.9 906 57.8
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 7.6e-270 934.5 1151 47.7
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.7e-269 933.3 1113 48.5
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.2e-269 932.9 1097 48.0
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.8e-266 923.3 1124 48.0
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 2.3e-266 922.9 1161 47.5
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 9.7e-265 917.5 1233 44.8
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 1.3e-264 917.1 1190 45.2
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 1.7e-264 916.8 1258 45.4
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 1.2e-262 910.6 1063 49.2
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 1.0e-258 897.5 1164 45.1
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 3.9e-258 895.6 1168 44.9
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 2.6e-257 892.9 1143 46.2
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 1.1e-252 877.5 1082 47.5
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 2.7e-251 872.8 1112 46.4
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.8e-250 870.2 1144 45.9
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 5.9e-246 855.1 1144 46.2
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 5.9e-246 855.1 1144 46.2
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 2.7e-243 846.3 1137 45.5
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 6.1e-243 845.1 1153 44.3
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.5e-241 840.5 1063 47.7
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 1.9e-236 823.5 1125 45.0
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.7e-235 819.7 687 60.1
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 8.8e-234 814.7 631 65.3
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.8e-226 790.4 1069 46.4
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 3.8e-221 772.7 1060 46.5
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 4.3e-220 769.2 903 49.2
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 3.5e-214 749.6 1078 43.1
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 6.8e-210 735.3 996 44.4
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 3.5e-206 723.0 1151 41.2
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.2e-203 714.5 762 52.9
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.6e-203 714.1 656 56.9
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.8e-202 710.7 990 46.4
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.2e-201 708.0 990 46.3
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.8e-194 684.1 1116 42.5
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 2.6e-193 680.2 943 44.5
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 2.9e-192 676.8 640 56.9
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 7.6e-177 625.5 512 63.9
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.7e-174 617.1 951 41.3
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.5e-169 599.7 427 70.5
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 5.6e-164 582.8 733 47.7
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.3e-160 571.6 562 56.6
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.7e-160 571.2 814 44.7
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 6.1e-150 536.2 777 44.3
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.5e-137 495.0 458 66.4
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 2.8e-115 421.0 655 39.2
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 3.7e-115 420.6 644 38.2
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 8.3e-115 419.5 1055 32.3
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 4.2e-111 407.1 336 61.0
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 1.8e-106 391.7 314 65.0
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.1e-101 374.4 717 38.9
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 5.2e-101 373.6 307 63.8
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 5.6e-95 353.6 602 40.2
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 2.6e-92 344.7 269 62.5
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 7.5e-92 343.2 286 60.5
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 3.4e-68 264.6 406 38.7
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.7e-67 262.3 354 42.7
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 7.9e-49 200.3 592 31.2
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 2.5e-31 142.1 537 27.6
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 3.4e-28 131.7 268 35.1
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 3.0e-24 118.6 265 34.3
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.1e-23 116.7 293 27.0
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 1.3e-14 86.7 92 54.3
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 4.5e-12 78.2 270 28.1
SHI12870 Sapria himalayana HOM05D005064 ORTHO05D006611 3.8e-11 75.1 112 41.1
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 3.2e-10 72.0 135 39.3
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 1.6e-09 69.7 143 37.8
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 2.3e-08 65.9 47 70.2
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 8.8e-08 63.9 45 68.9


User provided reference genes

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