Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p012780 Quercus lobata HOM05D001495 ORTHO05D001391 1.9e-49 199.1 96 100.0
GSVIVG01034966001 Vitis vinifera HOM05D001495 ORTHO05D001391 2.8e-29 132.1 68 89.7
TAR365G0946 Trochodendron aralioides HOM05D001495 ORTHO05D001391 2.4e-28 129.0 68 92.6
Actinidia13351 Actinidia chinensis HOM05D001495 ORTHO05D001391 3.1e-28 128.6 69 88.4
Lalb_Chr13g0298581 Lupinus albus HOM05D001495 ORTHO05D001391 9.1e-28 127.1 69 88.4
Cfa015287 Carpinus fangiana HOM05D001495 ORTHO05D001391 1.2e-27 126.7 69 87.0
Lalb_Chr07g0181991 Lupinus albus HOM05D001495 ORTHO05D001391 1.6e-27 126.3 69 87.0
Manes.15G001500 Manihot esculenta HOM05D001495 ORTHO05D001391 1.6e-27 126.3 77 83.1
CSS0023329 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 2.6e-27 125.6 68 85.3
CSS0023330 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 2.6e-27 125.6 68 85.3
CSS0029961 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 2.6e-27 125.6 68 85.3
Hma1.2p1_0078F.1_g039900 Hydrangea macrophylla HOM05D001495 ORTHO05D001391 2.6e-27 125.6 70 87.1
Actinidia14253 Actinidia chinensis HOM05D001495 ORTHO05D001391 3.5e-27 125.2 69 85.5
Dinv15145 Davidia involucrata HOM05D001495 ORTHO05D001391 3.5e-27 125.2 68 86.8
Medtr4g122650 Medicago truncatula HOM05D001495 ORTHO05D001391 3.5e-27 125.2 70 82.9
Psat4g021880 Pisum sativum HOM05D001495 ORTHO05D001391 5.9e-27 124.4 70 82.9
Glyma.07G237900 Glycine max HOM05D001495 ORTHO05D001391 7.7e-27 124.0 71 84.5
Glyma.17G035500 Glycine max HOM05D001495 ORTHO05D001391 7.7e-27 124.0 71 84.5
Ah.13g071430 Amaranthus hybridus HOM05D001495 ORTHO05D001391 1.0e-26 123.6 74 82.4
TPR.G25425 Trifolium pratense HOM05D001495 ORTHO05D001391 1.0e-26 123.6 70 82.9
Nn3g21739 Nelumbo nucifera HOM05D001495 ORTHO05D001391 1.3e-26 123.2 70 84.3
vmacro15174 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 1.3e-26 123.2 85 71.8
Sc25g0003200 Simmondsia chinensis HOM05D001495 ORTHO05D001391 1.7e-26 122.9 70 81.4
TAR636G2324 Trochodendron aralioides HOM05D001495 ORTHO05D001391 3.8e-26 121.7 70 82.9
ClCG06G004470 Citrullus lanatus HOM05D001495 ORTHO05D001391 8.5e-26 120.6 70 81.4
MD16G1150700 Malus domestica HOM05D001495 ORTHO05D001391 8.5e-26 120.6 70 82.9
Sed0003150 Sechium edule HOM05D001495 ORTHO05D001391 8.5e-26 120.6 70 81.4
CANSAT11G1739 Cannabis sativa HOM05D001495 ORTHO05D001391 1.1e-25 120.2 70 82.9
Ca_21427_v3 Cicer arietinum L. HOM05D001495 ORTHO05D001391 1.9e-25 119.4 70 81.4
CsaV3_6G028500 Cucumis sativus L. HOM05D001495 ORTHO05D001391 1.9e-25 119.4 70 81.4
CiPaw.02G073400 Carya illinoinensis HOM05D001495 ORTHO05D001391 3.2e-25 118.6 70 87.1
AUR62016232 Chenopodium quinoa HOM05D001495 ORTHO05D001391 4.2e-25 118.2 74 75.7
Nn4g25557 Nelumbo nucifera HOM05D001495 ORTHO05D001391 7.2e-25 117.5 68 83.8
RcHm_v2.0_Chr4g0425821 Rosa chinensis HOM05D001495 ORTHO05D001391 7.2e-25 117.5 72 77.8
CSS0010886 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 9.4e-25 117.1 68 82.4
MELO3C021258.2 Cucumis melo HOM05D001495 ORTHO05D001391 9.4e-25 117.1 69 81.2
Manes.03G206500 Manihot esculenta HOM05D001495 ORTHO05D001391 9.4e-25 117.1 78 75.6
Aqoxy6G02578 Aquilegia oxysepala HOM05D001495 ORTHO05D001391 1.6e-24 116.3 73 76.7
Phvul.003G116400 Phaseolus vulgaris HOM05D001495 ORTHO05D001391 1.6e-24 116.3 71 78.9
TWI73G1144 Tripterygium wilfordii HOM05D001495 ORTHO05D001391 1.6e-24 116.3 77 76.6
VMungo1215G2798 Vigna mungo HOM05D001495 ORTHO05D001391 1.6e-24 116.3 71 78.9
Prupe.1G114600 Prunus persica HOM05D001495 ORTHO05D001391 3.6e-24 115.2 69 82.6
arahy.Tifrunner.gnm1.ann1.ZU7UIY Arachis hypogaea HOM05D001495 ORTHO05D001391 4.7e-24 114.8 70 81.4
Atru.chr4.3049 Acer truncatum HOM05D001495 ORTHO05D001391 1.4e-23 113.2 79 77.2
AUR62039258 Chenopodium quinoa HOM05D001495 ORTHO05D001391 1.8e-23 112.8 69 76.8
FvH4_4g20210 Fragaria vesca HOM05D001495 ORTHO05D001391 1.8e-23 112.8 75 76.0
EL10Ac3g05531 Beta vulgaris HOM05D001495 ORTHO05D001391 3.0e-23 112.1 74 75.7
Ciclev10006289m.g Citrus clementina HOM05D001495 ORTHO05D001391 4.0e-23 111.7 78 80.8
ATR0800G063 Amborella trichopoda HOM05D001495 ORTHO05D001391 5.2e-23 111.3 73 74.0
Cc03_g00650 Coffea canephora HOM05D001495 ORTHO05D001391 5.2e-23 111.3 70 77.1
Hund11986 Selenicereus undatus HOM05D001495 ORTHO05D001391 1.2e-22 110.2 76 73.7
Lj4g0013859 Lotus japonicus HOM05D001495 ORTHO05D001391 2.0e-22 109.4 78 70.5
SGA_v2.0_scaffold64G22100 Striga asiatica HOM05D001495 ORTHO05D001391 4.4e-22 108.2 74 71.6
Potri.010G147900 Populus trichocarpa HOM05D001495 ORTHO05D001391 5.7e-22 107.8 81 72.8
MD13G1150500 Malus domestica HOM05D001495 ORTHO05D001391 9.7e-22 107.1 70 75.7
Dinv44266 Davidia involucrata HOM05D001495 ORTHO05D001391 1.7e-21 106.3 58 86.2
THA.LOC104820311 Tarenaya hassleriana HOM05D001495 ORTHO05D001391 2.8e-21 105.5 81 71.6
Thecc.04G304200 Theobroma cacao HOM05D001495 ORTHO05D001391 2.8e-21 105.5 82 68.3
PSO724G0940 Papaver somniferum HOM05D001495 ORTHO05D001391 4.8e-21 104.8 65 80.0
Sopen01g024010 Solanum pennellii HOM05D001495 ORTHO05D001391 4.8e-21 104.8 86 66.3
Peaxi162Scf00228g00515 Petunia axillaris HOM05D001495 ORTHO05D001391 8.3e-21 104.0 84 65.5
Migut.G00044 Erythranthe guttata HOM05D001495 ORTHO05D001391 1.1e-20 103.6 70 74.3
COL.COLO4_34585 Corchorus olitorius HOM05D001495 ORTHO05D001391 1.4e-20 103.2 80 68.8
Sabra10G0114000 Salix brachista HOM05D001495 ORTHO05D001391 1.4e-20 103.2 80 71.2
Solyc01g058450.3 Solanum lycopersicum HOM05D001495 ORTHO05D001391 1.4e-20 103.2 86 65.1
CAN.G114.5 Capsicum annuum HOM05D001495 ORTHO05D001391 4.1e-20 101.7 77 70.1
Duzib151G0245 Durio zibethinus HOM05D001495 ORTHO05D001391 7.0e-20 100.9 82 68.3
HPP92_020088 Vanilla planifolia HOM05D001495 ORTHO05D001391 7.0e-20 100.9 68 70.6
HPP92_020089 Vanilla planifolia HOM05D001495 ORTHO05D001391 7.0e-20 100.9 68 70.6
THA.LOC104821799 Tarenaya hassleriana HOM05D001495 ORTHO05D001391 9.1e-20 100.5 81 66.7
SEGI_00512 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 3.5e-19 98.6 107 54.2
CDE02G3766 Ceratophyllum demersum HOM05D001495 ORTHO05D001391 4.5e-19 98.2 55 85.5
Lsat_1_v5_gn_6_261 Lactuca sativa HOM05D001495 ORTHO05D001391 4.5e-19 98.2 113 52.2
SEGI_25400 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 5.9e-19 97.8 92 60.9
Gohir.A10G173900 Gossypium hirsutum HOM05D001495 ORTHO05D001391 7.7e-19 97.4 82 64.6
Dinv33135 Davidia involucrata HOM05D001495 ORTHO05D001391 1.0e-18 97.1 66 69.7
SEGI_21142 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 1.7e-18 96.3 91 60.4
CARHR222670 Cardamine hirsuta HOM05D001495 ORTHO05D001391 2.9e-18 95.5 84 63.1
DCAR_026991 Daucus carota HOM05D001495 ORTHO05D001391 3.8e-18 95.1 61 73.8
Nitab4.5_0000177g0070 Nicotiana tabacum HOM05D001495 ORTHO05D001391 3.8e-18 95.1 68 70.6
AT4G16280 Arabidopsis thaliana HOM05D001495 ORTHO05D001391 6.5e-18 94.4 74 66.2
Gohir.D10G180400 Gossypium hirsutum HOM05D001495 ORTHO05D001391 8.5e-18 94.0 82 63.4
Gorai.011G201900 Gossypium raimondii HOM05D001495 ORTHO05D001391 8.5e-18 94.0 82 63.4
Nitab4.5_0009057g0010 Nicotiana tabacum HOM05D001495 ORTHO05D001391 3.2e-17 92.0 67 70.1
Sp7g14810 Schrenkiella parvula HOM05D001495 ORTHO05D001391 3.2e-17 92.0 79 63.3
Thhalv10024390m.g Eutrema salsugineum HOM05D001495 ORTHO05D001391 5.5e-17 91.3 70 68.6
Aa31LG10G5840 Aethionema arabicum HOM05D001495 ORTHO05D001391 7.2e-17 90.9 70 68.6
BcaNung00209 Brassica carinata HOM05D001495 ORTHO05D001391 9.4e-17 90.5 83 61.4
Carub.0007s2523 Capsella rubella HOM05D001495 ORTHO05D001391 9.4e-17 90.5 74 62.2
HanXRQChr13g0395241 Helianthus annuus HOM05D001495 ORTHO05D001391 9.4e-17 90.5 95 55.8
Atru.chr5.964 Acer truncatum HOM05D001495 ORTHO05D001391 1.2e-16 90.1 69 62.3
A01p21280 Brassica napus HOM05D001495 ORTHO05D001391 1.6e-16 89.7 83 60.2
BcaC09g50326 Brassica carinata HOM05D001495 ORTHO05D001391 2.1e-16 89.4 79 60.8
C01p26620 Brassica napus HOM05D001495 ORTHO05D001391 2.1e-16 89.4 79 60.8
BolC1t02603H Brassica oleracea HOM05D001495 ORTHO05D001391 2.1e-16 89.4 79 60.8
BraA01t02035Z Brassica rapa HOM05D001495 ORTHO05D001391 2.1e-16 89.4 79 60.8
CDE05G3400 Ceratophyllum demersum HOM05D001495 ORTHO05D001391 2.1e-16 89.4 46 91.3
Duzib212G0382 Durio zibethinus HOM05D001495 ORTHO05D001391 2.1e-16 89.4 85 60.0
Mapoly0009s0245 Marchantia polymorpha HOM05D001495 ORTHO05D001391 2.1e-16 89.4 66 68.2
Ciclev10019644m.g Citrus clementina HOM05D001495 ORTHO05D001391 3.6e-16 88.6 71 66.2
MBI15_g36236_MAGBIO Magnolia biondii HOM05D001495 ORTHO05D001391 8.0e-16 87.4 45 88.9
CSS0029739 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 2.3e-15 85.9 67 61.2
CiPaw.07G119600 Carya illinoinensis HOM05D001495 ORTHO05D001391 2.3e-15 85.9 65 61.5
Pp3c3_21560 Physcomitrium patens HOM05D001495 ORTHO05D001391 4.0e-15 85.1 69 62.3
Gohir.A07G129200 Gossypium hirsutum HOM05D001495 ORTHO05D001391 6.8e-15 84.3 67 58.2
Thecc.01G316900 Theobroma cacao HOM05D001495 ORTHO05D001391 6.8e-15 84.3 67 58.2
Gohir.D07G133600 Gossypium hirsutum HOM05D001495 ORTHO05D001391 1.5e-14 83.2 67 55.2
Gorai.001G144900 Gossypium raimondii HOM05D001495 ORTHO05D001391 1.5e-14 83.2 67 55.2
Os09g0123200 Oryza sativa ssp. japonica HOM05D001495 ORTHO05D001391 2.6e-14 82.4 68 55.9
Zm00001eb095560 Zea mays HOM05D001495 ORTHO05D001391 2.6e-14 82.4 56 66.1
Cpa.g.sc9.31 Carica papaya HOM05D001495 ORTHO05D001391 3.4e-14 82.0 47 78.7
ECA233G5661 Erigeron canadensis HOM05D001495 ORTHO05D001391 7.5e-14 80.9 114 46.5
Manes.01G230100 Manihot esculenta HOM05D001495 ORTHO05D001391 7.5e-14 80.9 66 62.1
CANSAT25G3309 Cannabis sativa HOM05D001495 ORTHO05D001391 9.8e-14 80.5 67 59.7
Duzib138G0012 Durio zibethinus HOM05D001495 ORTHO05D001391 9.8e-14 80.5 63 57.1
Hma1.2p1_0408F.1_g146520 Hydrangea macrophylla HOM05D001495 ORTHO05D001391 9.8e-14 80.5 63 58.7
GSVIVG01028149001 Vitis vinifera HOM05D001495 ORTHO05D001391 1.7e-13 79.7 68 57.4
Actinidia21385 Actinidia chinensis HOM05D001495 ORTHO05D001391 4.8e-13 78.2 66 54.5
Aqoxy2G02692 Aquilegia oxysepala HOM05D001495 ORTHO05D001391 4.8e-13 78.2 67 56.7
Phvul.001G214500 Phaseolus vulgaris HOM05D001495 ORTHO05D001391 4.8e-13 78.2 72 52.8
Sc17g0000320 Simmondsia chinensis HOM05D001495 ORTHO05D001391 8.3e-13 77.4 51 64.7
QL12p019026 Quercus lobata HOM05D001495 ORTHO05D001391 1.8e-12 76.3 55 63.6
VMungo1383G3554 Vigna mungo HOM05D001495 ORTHO05D001391 1.8e-12 76.3 71 52.1
SEGI_15924 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 5.4e-12 74.7 67 56.7
PGR083G2330 Punica granatum HOM05D001495 ORTHO05D001391 7.0e-12 74.3 66 54.5
Potri.002G192900 Populus trichocarpa HOM05D001495 ORTHO05D001391 1.6e-11 73.2 66 56.1
Sabra02G0163000 Salix brachista HOM05D001495 ORTHO05D001391 2.0e-11 72.8 66 54.5
DCAR_002884 Daucus carota HOM05D001495 ORTHO05D001391 3.5e-11 72.0 70 51.4
MSTRG.21704 Avicennia marina HOM05D001495 ORTHO05D001391 4.5e-11 71.6 67 50.7
Cfa005762 Carpinus fangiana HOM05D001495 ORTHO05D001391 5.9e-11 71.2 50 64.0
arahy.Tifrunner.gnm1.ann1.R0SDX6 Arachis hypogaea HOM05D001495 ORTHO05D001391 1.3e-10 70.1 79 49.4
CsaV3_3G026590 Cucumis sativus L. HOM05D001495 ORTHO05D001391 1.3e-10 70.1 70 45.7
HanXRQChr14g0427731 Helianthus annuus HOM05D001495 ORTHO05D001391 1.3e-10 70.1 50 66.0
ClCG10G011580 Citrullus lanatus HOM05D001495 ORTHO05D001391 1.7e-10 69.7 65 47.7
AUR62011774 Chenopodium quinoa HOM05D001495 ORTHO05D001391 3.8e-10 68.6 50 58.0
Eucgr.H00995 Eucalyptus grandis HOM05D001495 ORTHO05D001391 6.6e-10 67.8 70 51.4
arahy.Tifrunner.gnm1.ann1.26UA7Y Arachis hypogaea HOM05D001495 ORTHO05D001391 8.6e-10 67.4 82 42.7
EL10As5g23564 Beta vulgaris HOM05D001495 ORTHO05D001391 8.6e-10 67.4 70 51.4
MELO3C012931.2 Cucumis melo HOM05D001495 ORTHO05D001391 1.9e-09 66.2 65 46.2
Glyma.03G220900 Glycine max HOM05D001495 ORTHO05D001391 1.9e-09 66.2 64 46.9
HanXRQChr04g0106241 Helianthus annuus HOM05D001495 ORTHO05D001391 2.5e-09 65.9 65 55.4
SMO244G0092 Selaginella moellendorffii HOM05D001495 ORTHO05D001391 2.5e-09 65.9 41 68.3
Hund02945 Selenicereus undatus HOM05D001495 ORTHO05D001391 2.5e-09 65.9 66 51.5
Rhsim13G0003200 Rhododendron simsii HOM05D001495 ORTHO05D001391 5.5e-09 64.7 81 42.0
SGA_v2.0_scaffold376G50291 Striga asiatica HOM05D001495 ORTHO05D001391 5.5e-09 64.7 68 48.5
Sed0024600 Sechium edule HOM05D001495 ORTHO05D001391 7.2e-09 64.3 77 41.6
Lalb_Chr15g0077991 Lupinus albus HOM05D001495 ORTHO05D001391 9.5e-09 63.9 69 47.8
Cc01_g21610 Coffea canephora HOM05D001495 ORTHO05D001391 1.6e-08 63.2 63 49.2
ECA236G3896 Erigeron canadensis HOM05D000324 ORTHO05D001014 2.1e-08 62.8 75 44.0
Lj1g0014560 Lotus japonicus HOM05D001495 ORTHO05D001391 3.6e-08 62.0 51 54.9
Lj1g0027953 Lotus japonicus HOM05D001495 ORTHO05D001391 3.6e-08 62.0 51 54.9
Nitab4.5_0002225g0090 Nicotiana tabacum HOM05D001495 ORTHO05D001391 6.1e-08 61.2 66 50.0
Migut.D00063 Erythranthe guttata HOM05D001495 ORTHO05D001391 1.0e-07 60.5 67 44.8
Glyma.19G217900 Glycine max HOM05D001495 ORTHO05D001391 1.4e-07 60.1 64 43.8
Ah.11g049000 Amaranthus hybridus HOM05D001495 ORTHO05D001391 3.0e-07 58.9 68 45.6
TPR.G4031 Trifolium pratense HOM05D001495 ORTHO05D001391 3.0e-07 58.9 56 46.4
Thhalv10001438m.g Eutrema salsugineum HOM05D001495 ORTHO05D001391 4.0e-07 58.5 75 44.0
MD09G1285500 Malus domestica HOM05D001495 ORTHO05D001391 5.2e-07 58.2 41 65.9
BcaB01g03173 Brassica carinata HOM05D001495 ORTHO05D001391 6.8e-07 57.8 44 56.8
CBR_g38484 Chara braunii HOM05D001495 ORTHO05D001391 6.8e-07 57.8 101 38.6
HanXRQChr05g0154081 Helianthus annuus HOM05D024023 ORTHO05D000110 8.9e-07 57.4 57 57.9
RcHm_v2.0_Chr3g0487191 Rosa chinensis HOM05D001495 ORTHO05D001391 8.9e-07 57.4 50 52.0
BcaB06g29453 Brassica carinata HOM05D001495 ORTHO05D001391 1.2e-06 57.0 46 54.3
Sp4g29260 Schrenkiella parvula HOM05D001495 ORTHO05D001391 1.5e-06 56.6 74 41.9
Sabra14G0087600 Salix brachista HOM05D001495 ORTHO05D001391 2.0e-06 56.2 46 56.5
TWI36G1783 Tripterygium wilfordii HOM05D001495 ORTHO05D001391 2.0e-06 56.2 49 53.1
AT2G47310 Arabidopsis thaliana HOM05D001495 ORTHO05D001391 2.6e-06 55.8 44 56.8
Medtr7g109810 Medicago truncatula HOM05D001495 ORTHO05D001391 2.6e-06 55.8 73 37.0
Nitab4.5_0000712g0180 Nicotiana tabacum HOM05D001495 ORTHO05D001391 2.6e-06 55.8 66 48.5
Psat3g019280 Pisum sativum HOM05D001495 ORTHO05D001391 2.6e-06 55.8 70 41.4
CsaV3_UNG230160 Cucumis sativus L. HOM05D001495 ORTHO05D001391 3.4e-06 55.5 29 89.7
Carub.0004s3003 Capsella rubella HOM05D001495 ORTHO05D001391 7.5e-06 54.3 75 45.3
FvH4_1g26970 Fragaria vesca HOM05D001495 ORTHO05D001391 7.5e-06 54.3 75 40.0
FAN19G1491 Fragaria x ananassa HOM05D001495 ORTHO05D001391 7.5e-06 54.3 75 40.0
FAN26G1997 Fragaria x ananassa HOM05D001495 ORTHO05D001391 7.5e-06 54.3 75 40.0
FAN28G1152 Fragaria x ananassa HOM05D001495 ORTHO05D001391 7.5e-06 54.3 75 40.0
FAN28G1530 Fragaria x ananassa HOM05D001495 ORTHO05D001391 7.5e-06 54.3 75 40.0
Actinidia38279 Actinidia chinensis HOM05D000452 ORTHO05D002893 9.8e-06 53.9 33 72.7
AL4G46870 Arabidopsis lyrata HOM05D001495 ORTHO05D001391 9.8e-06 53.9 44 54.5
Cpa.g.sc13.171 Carica papaya HOM05D000070 ORTHO05D119585 9.8e-06 53.9 31 77.4


User provided reference genes

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