Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 2.8e-299 1031.2 526 100.0
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.4e-242 842.8 529 81.9
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 1.5e-236 822.8 587 74.4
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.1e-221 773.5 528 76.7
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 2.2e-219 765.8 533 73.4
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 2.9e-219 765.4 531 75.9
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 1.1e-218 763.5 531 74.0
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 2.4e-218 762.3 511 75.7
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 7.9e-217 757.3 535 73.3
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 2.3e-216 755.7 534 74.2
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 3.0e-216 755.4 531 73.1
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 3.9e-216 755.0 534 74.2
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 4.3e-215 751.5 545 73.6
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 7.4e-215 750.7 532 74.1
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 1.6e-214 749.6 531 72.7
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 3.7e-214 748.4 528 75.4
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 2.6e-212 742.3 532 73.7
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 2.6e-212 742.3 551 69.9
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 3.4e-212 741.9 552 70.7
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 4.5e-212 741.5 537 73.9
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 7.6e-212 740.7 537 72.1
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 1.4e-210 736.5 532 71.2
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 4.2e-210 734.9 532 70.5
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 9.3e-210 733.8 531 71.0
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 3.5e-209 731.9 531 71.2
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 3.5e-209 731.9 531 70.8
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.0e-208 730.3 533 70.2
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 1.3e-208 729.9 531 70.8
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.5e-207 726.5 531 71.9
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 1.9e-207 726.1 551 70.6
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 6.2e-206 721.1 556 68.7
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 6.9e-205 717.6 558 68.3
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 1.5e-204 716.5 532 69.4
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 1.4e-202 709.9 534 70.6
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 3.2e-202 708.8 565 67.3
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 3.2e-202 708.8 497 75.5
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 3.5e-201 705.3 465 75.7
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 4.6e-201 704.9 534 71.0
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 6.7e-200 701.0 534 70.6
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 8.7e-200 700.7 566 67.0
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.1e-199 700.3 528 71.8
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 1.9e-199 699.5 507 70.6
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 9.7e-199 697.2 469 74.0
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 2.4e-197 692.6 506 70.0
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 7.7e-196 687.6 537 67.2
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.7e-195 686.4 529 69.9
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.9e-195 685.6 526 69.0
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 3.8e-195 685.3 540 69.1
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 3.8e-195 685.3 443 78.3
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 3.8e-195 685.3 527 68.5
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 1.1e-194 683.7 495 71.1
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 5.5e-194 681.4 529 69.2
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 5.5e-194 681.4 512 68.4
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 1.6e-193 679.9 466 72.3
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.6e-193 679.9 534 66.3
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 7.4e-191 671.0 514 69.3
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 9.7e-191 670.6 547 67.1
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 1.7e-190 669.8 447 78.7
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 6.3e-190 667.9 511 70.1
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 1.1e-189 667.2 516 70.3
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 1.1e-189 667.2 522 70.3
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 1.4e-189 666.8 544 67.3
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 3.1e-189 665.6 506 69.8
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 6.9e-189 664.5 531 67.0
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.5e-188 663.3 506 69.4
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 1.9e-186 656.4 541 64.9
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 4.2e-186 655.2 541 64.7
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 7.2e-186 654.4 514 69.5
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 2.7e-185 652.5 539 64.7
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 2.7e-185 652.5 539 64.4
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 2.7e-185 652.5 536 66.0
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 3.6e-185 652.1 539 64.7
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 9.7e-183 644.0 542 64.9
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 1.7e-182 643.3 514 67.5
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 3.7e-182 642.1 544 64.3
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 4.8e-182 641.7 515 67.4
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 8.2e-182 641.0 542 64.4
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 1.1e-181 640.6 546 64.3
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 1.4e-181 640.2 542 64.2
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.4e-181 640.2 516 64.3
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 2.4e-181 639.4 509 65.0
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 5.3e-181 638.3 542 64.4
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 1.9e-178 629.8 498 66.7
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.5e-178 629.4 592 60.5
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 1.8e-176 623.2 467 72.2
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 2.3e-176 622.9 456 71.1
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 4.0e-176 622.1 487 67.8
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 1.1e-173 614.0 467 69.2
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 9.1e-173 610.9 510 62.9
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 3.8e-171 605.5 425 71.8
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 3.2e-170 602.4 531 60.8
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 5.0e-163 578.6 430 70.0
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 2.7e-161 572.8 441 65.1
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 8.6e-147 524.6 528 57.0
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 2.9e-142 509.6 502 55.4
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 1.1e-112 411.4 294 72.8
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.3e-105 387.9 391 54.0
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 4.8e-97 359.4 265 67.5
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.9e-93 347.4 264 68.6
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 4.6e-92 342.8 264 68.2
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 2.5e-90 337.0 400 45.2
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 4.3e-82 309.7 167 86.8
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 1.1e-80 305.1 309 56.0
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 3.8e-78 296.6 427 39.8
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 7.9e-76 288.9 198 73.2
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 1.8e-67 261.2 378 39.9
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 7.4e-66 255.8 406 37.9
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 2.2e-57 227.6 125 80.0
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 7.0e-56 222.6 125 81.6
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.1e-53 215.3 263 49.8
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 9.4e-53 212.2 148 70.3
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 4.4e-50 203.4 176 57.4
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 5.4e-48 196.4 165 69.7
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 2.1e-44 184.5 251 42.2
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 9.8e-34 149.1 80 85.0
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 1.7e-30 138.3 219 40.6
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 3.9e-30 137.1 123 65.0
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 8.0e-28 129.4 101 68.3
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 3.5e-23 114.0 81 63.0
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 1.7e-17 95.1 82 65.9
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 1.1e-16 92.4 53 81.1
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 1.9e-16 91.7 114 52.6
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 1.6e-15 88.6 100 54.0
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 4.6e-15 87.0 95 49.5
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 1.5e-13 82.0 149 41.6
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.8e-12 77.8 78 56.4
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 3.6e-12 77.4 49 67.3
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 4.0e-11 73.9 173 36.4
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 4.4e-10 70.5 80 57.5
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 6.4e-09 66.6 32 93.8


User provided reference genes

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