Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 8.9e-198 693.3 336 100.0
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 5.4e-195 684.1 336 98.5
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 1.9e-163 579.3 336 83.3
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.6e-162 574.7 336 82.4
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 3.9e-161 571.6 337 81.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.7e-161 570.9 337 81.3
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.3e-160 568.2 336 81.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.7e-159 565.1 330 81.2
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.0e-158 561.6 343 78.7
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.6e-157 558.9 337 80.1
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 5.5e-155 551.2 334 80.2
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 8.7e-153 543.9 331 77.9
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.5e-152 543.1 333 76.3
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 4.3e-152 541.6 331 77.9
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 5.7e-152 541.2 330 78.5
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.7e-151 538.5 320 79.1
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.8e-150 536.2 330 76.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.4e-150 535.8 332 76.2
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.1e-150 535.0 323 80.2
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 5.3e-150 534.6 336 75.3
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 5.3e-150 534.6 333 74.8
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 6.9e-150 534.3 377 70.8
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 1.5e-149 533.1 333 76.3
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.5e-149 531.6 330 77.9
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.5e-149 531.6 334 76.0
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 7.7e-149 530.8 331 77.0
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.3e-148 530.0 330 77.6
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.3e-148 530.0 333 75.1
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.2e-148 529.3 330 74.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.2e-148 529.3 340 74.4
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.9e-148 528.9 333 75.1
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.9e-148 528.9 337 74.8
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 6.5e-148 527.7 332 75.3
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.9e-147 526.2 329 76.6
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.9e-147 526.2 331 75.8
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 3.2e-147 525.4 308 79.9
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.5e-147 524.6 306 80.7
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 7.2e-147 524.2 332 75.0
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 4.6e-146 521.5 332 74.1
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 4.6e-146 521.5 337 73.3
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 6.1e-146 521.2 333 73.0
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.0e-145 520.4 338 73.4
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.0e-145 520.4 333 74.8
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.3e-145 519.2 340 74.1
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.3e-145 519.2 338 73.7
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 3.0e-145 518.8 332 73.2
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 3.9e-145 518.5 338 73.1
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 6.7e-145 517.7 333 74.5
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.7e-145 517.7 333 74.2
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 8.8e-145 517.3 329 74.2
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 8.8e-145 517.3 341 73.6
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.3e-144 515.4 337 72.7
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 3.3e-144 515.4 334 73.1
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.3e-144 515.0 338 74.6
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.3e-144 515.0 329 74.5
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 5.7e-144 514.6 349 71.9
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 5.7e-144 514.6 306 79.7
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 9.7e-144 513.8 338 71.3
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.3e-143 513.5 338 71.9
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.7e-143 513.1 337 75.1
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.7e-143 513.1 338 71.6
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.3e-143 511.1 333 73.9
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.3e-143 511.1 333 73.9
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 6.3e-143 511.1 343 70.8
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.1e-142 510.4 336 72.6
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.4e-142 510.0 339 72.3
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.8e-142 509.6 325 74.2
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.1e-142 508.8 329 76.0
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 4.1e-142 508.4 339 71.1
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 4.1e-142 508.4 339 71.1
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 4.1e-142 508.4 339 71.1
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 4.1e-142 508.4 338 72.8
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 4.1e-142 508.4 328 74.4
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 4.1e-142 508.4 325 73.8
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 5.3e-142 508.1 339 71.1
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 5.3e-142 508.1 339 71.1
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 9.1e-142 507.3 337 73.0
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.5e-141 506.5 332 71.1
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 2.6e-141 505.8 335 72.8
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 3.4e-141 505.4 342 72.2
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.7e-140 503.1 348 70.1
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 5.0e-140 501.5 332 70.2
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.5e-140 501.1 325 72.0
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 8.5e-140 500.7 340 73.5
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 8.5e-140 500.7 325 72.0
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.7e-138 495.7 333 70.6
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 4.7e-138 495.0 317 72.2
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.0e-137 493.8 330 70.0
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.4e-137 493.4 329 72.0
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.3e-137 492.7 333 70.3
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 3.0e-137 492.3 306 74.5
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 6.7e-137 491.1 337 72.4
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 4.4e-136 488.4 320 71.6
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.1e-134 483.8 321 73.2
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.4e-134 482.6 318 73.6
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.2e-133 480.3 327 71.9
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.2e-133 480.3 324 68.8
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 5.9e-133 478.0 307 73.6
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.7e-132 476.5 327 71.6
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 2.9e-132 475.7 299 73.2
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 8.5e-132 474.2 333 70.3
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.5e-131 472.6 294 77.6
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.6e-130 469.9 306 70.6
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 2.7e-130 469.2 338 66.6
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 3.0e-129 465.7 352 66.8
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 9.7e-128 460.7 310 72.3
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 3.1e-126 455.7 262 83.6
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 2.0e-125 453.0 336 67.0
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.7e-124 449.9 354 61.9
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 2.9e-124 449.1 290 74.1
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.8e-124 448.7 282 75.2
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 5.0e-124 448.4 332 66.3
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 8.5e-124 447.6 329 66.0
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.2e-123 445.3 311 69.1
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-121 439.9 318 64.2
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 7.5e-120 434.5 263 79.1
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.7e-119 433.3 320 62.5
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 3.7e-119 432.2 313 65.8
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 2.4e-118 429.5 331 63.4
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 9.1e-118 427.6 313 66.1
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.5e-115 418.3 403 55.6
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.6e-112 409.5 286 69.9
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 5.4e-110 401.7 311 60.8
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.3e-108 397.1 242 78.1
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.5e-107 392.9 259 73.0
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.3e-107 392.5 311 60.1
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.2e-96 357.5 250 70.4
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 4.6e-93 345.5 220 73.2
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.6e-90 337.0 233 64.8
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.6e-90 337.0 323 55.7
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 5.6e-83 312.0 224 63.8
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.2e-80 304.3 301 50.2
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.5e-77 292.7 305 51.5
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.2e-74 284.3 268 55.6
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.4e-70 270.0 170 74.7
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 4.2e-70 269.2 185 72.4
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 3.9e-68 262.7 166 75.9
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 1.2e-53 214.5 138 70.3
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.3e-52 210.3 130 74.6
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 5.6e-51 205.7 125 78.4
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 7.9e-37 158.7 92 79.3
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 4.5e-32 142.9 171 50.9
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.2e-23 114.0 75 74.7
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 3.2e-22 110.2 77 68.8
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 4.2e-22 109.8 64 78.1
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.6e-21 107.8 72 62.5
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.1e-21 107.5 81 64.2
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 6.1e-21 105.9 66 74.2
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 9.1e-17 92.0 55 80.0
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 3.9e-12 76.6 76 51.3
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.4e-11 73.2 41 78.0
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 5.7e-11 72.8 221 26.2
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.8e-09 67.8 217 28.1
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 3.1e-09 67.0 225 26.7
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 9.1e-09 65.5 76 46.1
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 2.2e-07 60.8 232 23.7
C09p49940 Brassica napus HOM05D002024 ORTHO05D007288 6.5e-07 59.3 202 28.2
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 1.9e-06 57.8 213 25.4
BcaC04g19913 Brassica carinata HOM05D002024 ORTHO05D007288 5.5e-06 56.2 202 26.7


User provided reference genes

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