Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p008713 Quercus lobata HOM05D004509 ORTHO05D023994 2.8e-46 188.3 101 100.0
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 1.2e-33 146.4 81 96.3
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 5.3e-29 131.0 81 86.4
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 2.9e-27 125.2 81 84.0
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 2.3e-24 115.5 81 80.2
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 2.8e-22 108.6 81 67.9
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 8.2e-22 107.1 81 65.4
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 1.1e-21 106.7 81 67.9
Cpa.g.sc3.320 Carica papaya HOM05D004509 ORTHO05D005568 1.8e-21 105.9 81 66.7
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 2.4e-21 105.5 81 69.1
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 2.4e-21 105.5 81 67.9
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 4.1e-21 104.8 81 65.4
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 6.9e-21 104.0 81 66.7
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.2e-20 103.2 81 64.2
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 1.2e-20 103.2 81 64.2
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 2.6e-20 102.1 81 64.2
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 7.7e-20 100.5 81 67.9
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 1.7e-19 99.4 81 64.2
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 3.8e-19 98.2 81 65.4
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 3.8e-19 98.2 81 65.4
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 3.8e-19 98.2 81 65.4
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 5.0e-19 97.8 81 64.2
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 6.5e-19 97.4 81 64.2
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 6.5e-19 97.4 81 65.4
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 8.5e-19 97.1 81 63.0
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 1.1e-18 96.7 81 61.7
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 1.1e-18 96.7 82 64.6
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 1.1e-18 96.7 81 64.2
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.4e-18 96.3 80 65.0
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 1.4e-18 96.3 83 68.7
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 2.5e-18 95.5 96 59.4
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 3.2e-18 95.1 81 66.7
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 3.2e-18 95.1 96 59.4
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 3.2e-18 95.1 80 62.5
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 4.2e-18 94.7 96 58.3
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 4.2e-18 94.7 96 58.3
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 5.5e-18 94.4 96 58.3
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 5.5e-18 94.4 96 58.3
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 5.5e-18 94.4 96 58.3
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 5.5e-18 94.4 81 61.7
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 9.4e-18 93.6 81 61.7
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 1.2e-17 93.2 81 63.0
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 1.2e-17 93.2 81 63.0
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 1.2e-17 93.2 81 61.7
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.6e-17 92.8 81 61.7
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 2.1e-17 92.4 80 62.5
Lsat_1_v5_gn_2_129181 Lactuca sativa HOM05D004509 ORTHO05D005568 3.6e-17 91.7 81 56.8
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 4.7e-17 91.3 81 59.3
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 4.7e-17 91.3 80 60.0
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 4.7e-17 91.3 80 58.8
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 6.1e-17 90.9 81 60.5
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 6.1e-17 90.9 96 56.2
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 7.9e-17 90.5 96 56.2
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 7.9e-17 90.5 81 59.3
Lsat_1_v5_gn_3_74740 Lactuca sativa HOM05D004509 ORTHO05D005568 7.9e-17 90.5 81 59.3
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 1.0e-16 90.1 96 57.3
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 1.4e-16 89.7 101 55.4
BcaC07g38178 Brassica carinata HOM05D004509 ORTHO05D023994 1.4e-16 89.7 77 63.6
MSTRG.8823 Avicennia marina HOM05D004509 ORTHO05D005568 2.3e-16 89.0 92 54.3
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 2.3e-16 89.0 81 58.0
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 2.3e-16 89.0 80 65.0
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 3.0e-16 88.6 81 60.5
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 3.0e-16 88.6 80 63.8
HanXRQChr07g0205911 Helianthus annuus HOM05D004509 ORTHO05D005568 3.0e-16 88.6 81 56.8
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 3.9e-16 88.2 81 60.5
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 6.7e-16 87.4 81 60.5
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 6.7e-16 87.4 80 63.8
Gorai.001G048500 Gossypium raimondii HOM05D004509 ORTHO05D005568 6.7e-16 87.4 81 58.0
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 1.5e-15 86.3 81 58.0
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 1.5e-15 86.3 80 62.5
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 2.6e-15 85.5 80 57.5
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 2.6e-15 85.5 80 61.2
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 2.6e-15 85.5 82 56.1
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 3.3e-15 85.1 81 58.0
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 3.3e-15 85.1 81 55.6
Hma1.2p1_1132F.1_g260340 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 5.7e-15 84.3 82 63.4
Hma1.2p1_1640F.1_g295066 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 5.7e-15 84.3 82 63.4
Hma1.2p1_1640F.1_g295070 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 5.7e-15 84.3 82 63.4
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 5.7e-15 84.3 80 62.5
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 5.7e-15 84.3 80 60.0
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 9.7e-15 83.6 81 54.3
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 9.7e-15 83.6 96 53.1
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 9.7e-15 83.6 96 54.2
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 1.3e-14 83.2 81 56.8
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 1.3e-14 83.2 81 60.5
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 4.8e-14 81.3 96 51.0
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 8.2e-14 80.5 80 53.8
Hund04598 Selenicereus undatus HOM05D004509 ORTHO05D005568 8.2e-14 80.5 81 53.1
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 1.1e-13 80.1 82 58.5
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.4e-13 79.7 81 54.3
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 1.4e-13 79.7 81 58.0
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 1.8e-13 79.3 81 53.1
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 1.8e-13 79.3 81 55.6
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 2.4e-13 79.0 81 53.1
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 2.4e-13 79.0 96 53.1
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 2.4e-13 79.0 81 51.9
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 3.1e-13 78.6 81 55.6
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 4.1e-13 78.2 96 53.1
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 4.1e-13 78.2 81 51.9
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 5.3e-13 77.8 91 50.5
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 7.0e-13 77.4 84 57.1
Lalb_Chr04g0264301 Lupinus albus HOM05D004509 ORTHO05D005568 7.0e-13 77.4 91 50.5
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 7.0e-13 77.4 81 51.9
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 1.2e-12 76.6 81 53.1
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 1.6e-12 76.3 81 49.4
CDE02G3300 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 2.0e-12 75.9 80 46.2
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 2.6e-12 75.5 80 50.0
ClCG09G013190 Citrullus lanatus HOM05D004509 ORTHO05D005568 4.5e-12 74.7 81 50.6
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 5.9e-12 74.3 81 48.1
Oeu022490.1 Olea europaea HOM05D004509 ORTHO05D005568 7.7e-12 73.9 80 47.5
Migut.F00473 Erythranthe guttata HOM05D004509 ORTHO05D005568 1.7e-11 72.8 95 45.3
SGA_v2.0_scaffold70G23600 Striga asiatica HOM05D004509 ORTHO05D005568 1.7e-11 72.8 92 45.7
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 2.2e-11 72.4 79 51.9
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 2.2e-11 72.4 81 46.9
Oeu015322.1 Olea europaea HOM05D004509 ORTHO05D005568 2.9e-11 72.0 80 43.8
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 6.5e-11 70.9 91 47.3
Lsat_1_v5_gn_9_52140 Lactuca sativa HOM05D004509 ORTHO05D005568 2.5e-10 68.9 82 47.6
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 1.2e-09 66.6 80 45.0
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 2.1e-09 65.9 70 52.9
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 2.1e-09 65.9 70 52.9
Thhalv10014220m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 1.0e-08 63.5 96 41.7
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 3.0e-08 62.0 70 48.6
PGR042G2749 Punica granatum HOM05D004509 ORTHO05D005568 5.2e-08 61.2 84 45.2
ATR0589G031 Amborella trichopoda HOM05D004509 ORTHO05D005568 1.5e-07 59.7 81 40.7
arahy.Tifrunner.gnm1.ann1.4JD3YM Arachis hypogaea HOM05D004509 ORTHO05D005568 9.7e-07 57.0 96 44.8
arahy.Tifrunner.gnm1.ann1.WP6JS3 Arachis hypogaea HOM05D004509 ORTHO05D005568 6.3e-06 54.3 96 45.8


User provided reference genes

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