Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 2328.1 1400 100.0
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1563.5 1427 68.9
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1511.9 1429 67.1
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1468.4 1418 64.1
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1373.6 1448 62.2
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1363.2 1428 61.6
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1352.0 1426 60.2
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1332.8 1445 61.2
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1316.6 1446 60.4
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1315.8 1448 60.0
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1300.0 1435 62.8
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1289.2 1459 58.6
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1289.2 1448 55.8
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1261.5 1447 56.4
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1256.9 1457 56.0
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1251.9 1467 58.2
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1245.3 1437 59.6
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1241.1 1461 58.3
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1238.0 1452 59.5
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1234.9 1458 55.1
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1231.9 1463 54.8
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1228.0 1477 58.4
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1219.5 1465 59.2
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1217.6 1447 56.5
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1210.7 1373 58.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1206.0 1444 57.4
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1200.7 1431 57.0
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1194.9 1436 54.8
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1193.7 1437 55.3
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1192.9 1455 56.6
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1189.9 1516 54.5
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1183.7 1459 55.4
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1181.4 1459 56.4
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1181.0 1442 54.9
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1169.1 1471 54.3
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1167.9 1461 54.3
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1167.1 1447 56.5
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1166.8 1462 54.2
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 0.0e+00 1166.4 1442 53.5
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1164.4 1432 55.6
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1164.1 1441 55.2
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1161.0 1454 54.1
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 0.0e+00 1159.8 1441 54.9
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 0.0e+00 1151.7 1453 54.9
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1150.2 1461 54.1
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1149.4 1472 55.5
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 0.0e+00 1148.7 1450 56.4
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1144.4 1457 52.8
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1143.6 1458 54.0
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1142.5 1496 56.4
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1137.9 1435 53.5
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1131.3 1428 54.3
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1125.9 1439 54.4
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1121.7 1271 60.6
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1093.6 1449 52.2
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1092.0 1395 55.1
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 0.0e+00 1082.4 1417 52.4
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 0.0e+00 1080.9 1432 52.6
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.6e-310 1068.1 1442 52.8
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.8e-308 1063.1 1472 53.5
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 9.8e-307 1057.4 1443 49.1
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 1.7e-298 1030.0 1429 51.9
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.9e-297 1026.5 1296 52.5
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 9.2e-297 1024.2 1472 49.7
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 5.6e-294 1015.0 1477 57.2
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 3.1e-292 1009.2 1284 56.3
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.2e-291 1007.3 889 84.8
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 3.7e-290 1002.3 1453 48.0
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 4.7e-285 985.3 1469 50.3
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 4.0e-284 982.2 966 58.3
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.5e-283 980.3 1424 48.1
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.3e-279 967.2 1435 48.6
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 8.6e-279 964.5 1230 50.3
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 4.7e-269 932.2 930 57.3
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.0e-267 926.8 1313 47.6
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 3.5e-264 916.0 1460 48.2
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 4.6e-264 915.6 1484 45.7
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 8.7e-263 911.4 958 55.5
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.5e-262 910.6 1416 45.3
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.2e-259 901.0 1473 46.2
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 2.0e-259 900.2 1465 47.3
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 3.4e-259 899.4 905 56.0
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 4.5e-259 899.0 1467 45.9
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 8.4e-258 894.8 1227 47.8
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 1.4e-257 894.0 1475 45.7
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 1.2e-256 891.0 1469 45.5
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 5.6e-254 882.1 1475 45.5
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 1.3e-253 880.9 1474 47.3
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 8.1e-253 878.2 774 63.4
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 1.4e-252 877.5 1448 46.1
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 3.1e-252 876.3 1429 47.0
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 6.9e-252 875.2 1297 47.3
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 4.9e-250 869.0 1501 41.6
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 3.5e-248 862.8 1482 47.1
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 7.4e-246 855.1 1464 49.0
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 3.1e-244 849.7 1452 44.6
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 3.1e-244 849.7 1452 44.6
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 5.3e-244 849.0 1452 44.6
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 2.6e-243 846.7 1462 42.9
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.0e-242 844.7 1459 44.6
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 1.9e-241 840.5 1453 44.7
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.2e-241 839.7 1165 51.9
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 4.5e-235 819.3 1371 44.8
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.0e-234 818.1 1435 46.3
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 1.5e-219 767.7 1480 44.2
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 5.5e-217 759.2 1417 39.7
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.4e-215 754.6 843 53.5
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.1e-212 745.0 1456 45.1
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.6e-211 741.1 927 50.5
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 1.3e-210 738.0 1262 42.0
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 4.2e-209 733.0 1440 41.6
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 2.0e-206 724.2 1458 40.4
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 9.1e-204 715.3 533 72.0
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.6e-200 704.5 1102 50.7
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 1.5e-198 698.0 963 47.1
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 2.0e-195 687.6 1443 41.4
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 7.7e-195 685.6 1195 43.5
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.4e-183 648.3 1465 39.2
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 5.4e-180 636.3 785 50.2
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 6.6e-154 549.7 1268 36.0
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 3.0e-146 524.2 1287 36.5
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 5.6e-145 520.0 1323 37.7
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 6.2e-144 516.5 1357 35.2
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 1.2e-142 512.3 983 39.0
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 8.5e-117 426.4 1443 32.6
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.1e-113 416.0 417 54.7
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 3.6e-107 394.4 327 62.7
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 8.8e-106 389.8 1461 30.7
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.6e-99 369.0 1491 30.8
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 1.4e-95 355.9 489 45.4
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.6e-94 352.4 993 32.1
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 4.8e-88 330.9 338 54.7
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.4e-82 312.8 1262 29.2
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 7.7e-78 297.0 443 45.4
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.0e-74 284.6 1346 33.8
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 4.1e-71 274.6 509 42.6
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.2e-67 263.1 976 29.5
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.2e-65 256.5 966 29.2
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 8.3e-64 250.4 948 29.2
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 3.5e-62 245.0 933 28.8
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.8e-62 243.8 865 31.1
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 4.9e-56 224.6 977 27.5
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.9e-56 224.6 214 58.9
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 8.3e-56 223.8 335 40.6
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 1.2e-54 219.9 856 28.5
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.6e-54 218.0 214 57.5
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 4.3e-52 211.5 675 28.0
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 3.4e-49 201.8 865 27.9
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 4.9e-48 198.0 1044 26.3
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 2.4e-47 195.7 922 25.1
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 7.1e-47 194.1 226 53.1
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 6.0e-46 191.0 612 46.9
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 1.1e-44 186.8 244 43.4
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.2e-43 183.3 192 54.2
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 1.9e-39 169.5 995 25.5
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 5.6e-36 157.9 500 29.4
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.8e-35 155.6 678 27.9
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.4e-34 152.5 1074 24.4
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 9.0e-34 150.6 707 24.9
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.2e-33 150.2 1011 24.0
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 1.4e-31 143.3 219 58.4
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 1.4e-26 126.7 124 57.3
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 2.4e-26 125.9 185 38.4
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 5.5e-23 114.8 84 63.1
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 1.3e-21 110.2 145 44.8
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 1.1e-20 107.1 857 25.3
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 5.6e-20 104.8 161 34.2
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 4.0e-18 98.6 115 49.6
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.2e-17 97.1 88 54.5
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 4.5e-17 95.1 90 55.6
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.5e-14 85.5 117 47.9
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 1.3e-13 83.6 146 38.4
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 8.7e-13 80.9 440 30.7
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 3.7e-11 75.5 86 44.2
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 2.6e-09 69.3 493 24.1
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.5e-09 68.6 128 34.4
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 7.6e-09 67.8 69 53.6
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 5.0e-08 65.1 52 55.8
Glyma.16G010466 Glycine max HOM05D001849 ORTHO05D004075 2.1e-06 59.7 35 77.1


User provided reference genes

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