Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 0.0e+00 1468.4 757 100.0
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 0.0e+00 1465.7 757 99.7
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 0.0e+00 1106.7 753 75.8
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 0.0e+00 1079.3 901 66.6
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 4.5e-290 1001.1 1102 54.4
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 2.5e-272 942.2 753 65.2
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 1.4e-270 936.4 756 63.8
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 8.8e-270 933.7 749 65.3
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 1.5e-269 932.9 707 68.9
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 1.8e-267 926.0 731 67.3
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 5.9e-266 921.0 754 64.1
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 1.3e-265 919.8 756 64.7
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 2.2e-265 919.1 757 63.3
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 2.2e-265 919.1 743 66.6
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 1.5e-264 916.4 730 66.3
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 2.5e-264 915.6 729 65.7
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 4.2e-264 914.8 756 64.7
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 6.3e-260 901.0 756 63.0
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 1.3e-257 893.3 788 61.4
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 2.3e-257 892.5 655 69.3
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 9.8e-253 877.1 698 65.2
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 2.9e-252 875.5 749 62.9
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 4.1e-251 871.7 733 63.6
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 7.8e-250 867.5 729 64.5
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 2.3e-249 865.9 753 60.2
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.5e-248 863.2 769 61.1
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.5e-248 862.4 749 62.3
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 4.3e-248 861.7 722 62.6
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 9.5e-248 860.5 743 61.9
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 1.6e-247 859.8 704 63.4
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 4.7e-247 858.2 737 61.2
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 6.2e-247 857.8 749 61.7
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.8e-246 856.3 730 62.7
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 5.8e-245 851.3 759 60.6
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 7.5e-245 850.9 709 63.6
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.7e-244 849.7 709 63.6
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 4.9e-244 848.2 710 63.7
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 1.1e-243 847.0 767 59.8
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 3.2e-243 845.5 751 60.3
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.7e-241 839.7 710 63.0
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 5.0e-241 838.2 746 58.0
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 8.3e-236 820.8 759 58.6
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 1.9e-235 819.7 761 58.0
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 4.1e-235 818.5 761 58.3
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 1.7e-233 813.1 750 59.2
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 9.5e-232 807.4 701 60.2
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 2.1e-231 806.2 745 56.8
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 3.1e-230 802.4 733 57.8
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 4.0e-230 802.0 738 58.4
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 4.0e-230 802.0 727 59.3
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 4.9e-228 795.0 733 57.6
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 1.2e-226 790.4 683 61.5
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 1.6e-226 790.0 685 60.4
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 2.7e-226 789.3 759 57.4
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 3.5e-226 788.9 720 57.8
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 4.3e-224 781.9 684 59.9
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 4.3e-224 781.9 701 58.9
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 7.3e-224 781.2 735 57.4
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 7.3e-224 781.2 767 55.9
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 2.1e-223 779.6 740 56.9
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 1.8e-222 776.5 709 57.7
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 2.4e-222 776.2 743 56.1
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 3.1e-222 775.8 711 57.7
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 3.1e-222 775.8 756 56.0
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 4.4e-221 771.9 669 60.4
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 7.6e-221 771.2 671 60.2
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 2.2e-220 769.6 740 56.8
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 8.4e-220 767.7 700 58.0
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 4.2e-219 765.4 704 58.7
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 5.6e-216 755.0 698 57.3
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 6.2e-215 751.5 750 54.5
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 2.4e-214 749.6 751 54.7
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 6.9e-214 748.0 700 57.4
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.5e-213 745.3 700 56.9
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 2.9e-212 742.7 717 56.8
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 4.6e-210 735.3 680 57.9
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 6.0e-210 734.9 705 57.0
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 1.0e-209 734.2 720 55.8
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 1.8e-209 733.4 728 54.8
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.0e-209 732.6 603 63.5
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 6.7e-209 731.5 722 55.0
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 8.7e-209 731.1 742 54.4
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.6e-207 726.9 713 54.3
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 2.8e-207 726.1 739 53.0
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 4.8e-207 725.3 710 54.2
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 1.1e-206 724.2 739 53.0
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 2.6e-205 719.5 715 54.3
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 4.6e-202 708.8 604 62.1
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 1.8e-198 696.8 727 53.2
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 9.0e-198 694.5 728 53.2
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 1.5e-197 693.7 738 50.3
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 3.9e-185 652.5 695 52.4
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 3.9e-185 652.5 751 49.5
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 3.9e-185 652.5 625 56.8
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.2e-175 620.2 679 52.1
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.1e-174 616.3 655 51.9
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 1.1e-171 607.8 753 46.3
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.7e-154 549.3 671 48.6
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.5e-144 517.7 518 54.1
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.4e-134 483.8 401 64.3
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 1.8e-129 467.6 750 40.9
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 2.3e-121 440.7 391 59.3
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 4.3e-107 393.3 320 64.4
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 2.5e-99 367.5 658 38.3
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.6e-98 364.8 595 38.2
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 6.2e-98 362.8 700 35.6
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.1e-91 342.0 267 65.5
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 5.6e-91 339.7 705 34.9
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.6e-90 338.2 403 49.1
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 1.3e-82 312.0 580 35.5
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.4e-81 307.8 679 34.5
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.7e-53 214.5 293 45.1
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 3.0e-52 211.1 617 29.2
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 3.1e-49 201.1 664 30.0
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 6.8e-44 183.3 646 26.2
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 1.8e-36 158.7 757 25.4
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 4.4e-35 154.1 219 43.4
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 4.8e-34 150.6 162 50.0
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 8.3e-34 149.8 179 48.0
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.2e-32 146.0 152 54.6
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 4.4e-27 127.5 151 48.3
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 2.2e-26 125.2 94 70.2
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.8e-25 122.1 151 47.7
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 1.1e-17 96.3 165 40.6
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 6.0e-16 90.5 92 52.2
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 2.3e-15 88.6 74 60.8
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 6.6e-15 87.0 665 21.8
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 6.8e-12 77.0 120 40.0
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.0e-11 75.5 72 52.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-07 63.2 49 57.1


User provided reference genes

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