Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p076142 Quercus lobata HOM05D000104 ORTHO05D006385 3.1e-199 698.4 373 100.0
QL11p013542 Quercus lobata HOM05D000104 ORTHO05D006385 1.4e-146 523.5 373 79.1
Haze_06104 Corylus avellana HOM05D000104 ORTHO05D006385 6.8e-106 388.3 374 62.0
Cfa000689 Carpinus fangiana HOM05D000104 ORTHO05D006385 2.2e-104 383.3 379 61.2
CiPaw.09G075000 Carya illinoinensis HOM05D000104 ORTHO05D006385 4.1e-95 352.4 373 57.1
CiPaw.10G063100 Carya illinoinensis HOM05D000104 ORTHO05D006385 1.4e-74 284.3 285 59.6
Duzib248G0971 Durio zibethinus HOM05D000104 ORTHO05D006385 2.1e-70 270.4 381 47.0
Duzib132G0144 Durio zibethinus HOM05D000104 ORTHO05D006385 9.6e-68 261.5 373 45.8
Duzib052G0523 Durio zibethinus HOM05D000104 ORTHO05D006385 8.1e-67 258.5 378 46.0
Thecc.02G006500 Theobroma cacao HOM05D000104 ORTHO05D006385 1.4e-66 257.7 374 47.6
COL.COLO4_17640 Corchorus olitorius HOM05D000104 ORTHO05D006385 7.6e-65 251.9 371 46.6
Prupe.4G114900 Prunus persica HOM05D000104 ORTHO05D006385 1.2e-62 244.6 376 44.9
RcHm_v2.0_Chr5g0020581 Rosa chinensis HOM05D000104 ORTHO05D006385 3.5e-62 243.0 379 44.1
Dinv09066 Davidia involucrata HOM05D000104 ORTHO05D006385 6.0e-62 242.3 376 45.5
Lj4g0022521 Lotus japonicus HOM05D000104 ORTHO05D006385 1.0e-61 241.5 370 45.1
Potri.001G123400 Populus trichocarpa HOM05D000104 ORTHO05D006385 1.9e-60 237.3 375 45.1
Glyma.05G131500 Glycine max HOM05D000104 ORTHO05D006385 3.7e-59 233.0 372 44.4
Ca_18254_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006385 8.2e-59 231.9 368 43.8
FAN25G1943 Fragaria x ananassa HOM05D000104 ORTHO05D006385 2.4e-58 230.3 380 44.2
Glyma.08G086100 Glycine max HOM05D000104 ORTHO05D006385 2.4e-58 230.3 377 43.5
MD05G1249300 Malus domestica HOM05D000104 ORTHO05D006385 6.9e-58 228.8 391 43.2
Phvul.002G191300 Phaseolus vulgaris HOM05D000104 ORTHO05D006385 9.0e-58 228.4 386 41.5
Manes.16G060500 Manihot esculenta HOM05D000104 ORTHO05D006385 2.2e-56 223.8 376 44.9
MD10G1229800 Malus domestica HOM05D000104 ORTHO05D006385 2.9e-56 223.4 407 41.0
TPR.G2937 Trifolium pratense HOM05D000104 ORTHO05D006385 4.9e-56 222.6 368 45.7
TWI38G1081 Tripterygium wilfordii HOM05D000104 ORTHO05D006385 2.1e-54 217.2 372 41.7
arahy.Tifrunner.gnm1.ann1.VH4LBD Arachis hypogaea HOM05D000104 ORTHO05D006385 4.6e-54 216.1 374 43.3
FAN16G3696 Fragaria x ananassa HOM05D000104 ORTHO05D006385 7.9e-54 215.3 380 41.8
VMungo0251G0392 Vigna mungo HOM05D000104 ORTHO05D006385 7.9e-54 215.3 371 40.4
arahy.Tifrunner.gnm1.ann1.AWTX9V Arachis hypogaea HOM05D000104 ORTHO05D006385 1.8e-53 214.2 377 41.9
FAN21G0261 Fragaria x ananassa HOM05D000104 ORTHO05D006385 3.0e-53 213.4 379 41.4
Psat7g089160 Pisum sativum HOM05D000104 ORTHO05D006385 1.1e-52 211.5 374 42.2
Sabra03G0076300 Salix brachista HOM05D000104 ORTHO05D006385 1.9e-52 210.7 384 41.9
CANSAT35G1593 Cannabis sativa HOM05D000104 ORTHO05D006385 9.7e-52 208.4 375 40.8
TWI63G1682 Tripterygium wilfordii HOM05D000104 ORTHO05D006385 2.2e-51 207.2 371 40.4
TAR626G0969 Trochodendron aralioides HOM05D000104 ORTHO05D006385 2.2e-51 207.2 396 39.1
Potri.003G110100 Populus trichocarpa HOM05D000104 ORTHO05D006385 1.8e-50 204.1 384 41.1
Lalb_Chr12g0209031 Lupinus albus HOM05D000104 ORTHO05D006385 2.4e-50 203.8 383 41.0
Sabra01G0095100 Salix brachista HOM05D000104 ORTHO05D006385 2.4e-50 203.8 395 41.0
TWI15G0050 Tripterygium wilfordii HOM05D000104 ORTHO05D006385 3.1e-50 203.4 353 41.9
CsaV3_6G052880 Cucumis sativus L. HOM05D000104 ORTHO05D006385 2.0e-49 200.7 377 39.8
Ciclev10014010m.g Citrus clementina HOM05D000104 ORTHO05D006385 5.9e-49 199.1 335 43.3
ClCG01G025670 Citrullus lanatus HOM05D000104 ORTHO05D006385 7.7e-49 198.7 376 40.7
MELO3C007018.2 Cucumis melo HOM05D000104 ORTHO05D006385 2.2e-48 197.2 377 40.1
Gohir.A12G048001 Gossypium hirsutum HOM05D000104 ORTHO05D006385 2.9e-48 196.8 381 38.8
Gohir.D12G046800 Gossypium hirsutum HOM05D000104 ORTHO05D006385 5.0e-48 196.1 379 39.8
Gorai.008G049300 Gossypium raimondii HOM05D000104 ORTHO05D006385 4.2e-47 193.0 379 39.6
Cpa.g.sc30.142 Carica papaya HOM05D000104 ORTHO05D006385 2.1e-46 190.7 369 39.6
FvH4_3g12610 Fragaria vesca HOM05D000104 ORTHO05D006385 3.0e-45 186.8 379 39.3
Sed0021696 Sechium edule HOM05D000104 ORTHO05D006385 1.5e-44 184.5 378 39.7
Lalb_Chr07g0188451 Lupinus albus HOM05D000104 ORTHO05D006385 7.4e-44 182.2 378 38.6
Medtr4g096930 Medicago truncatula HOM05D000104 ORTHO05D006385 4.8e-43 179.5 374 39.8
Nn7g38207 Nelumbo nucifera HOM05D000104 ORTHO05D006385 3.6e-38 163.3 395 35.2
Atru.chr10.480 Acer truncatum HOM05D000104 ORTHO05D006385 1.0e-37 161.8 320 40.0
Actinidia33653 Actinidia chinensis HOM05D000104 ORTHO05D006385 1.4e-34 151.4 368 35.3
Actinidia22418 Actinidia chinensis HOM05D000104 ORTHO05D006385 5.3e-34 149.4 317 38.2
CSS0049241 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006385 6.5e-32 142.5 278 40.3
Rhsim02G0169000 Rhododendron simsii HOM05D000104 ORTHO05D006385 7.2e-31 139.0 367 35.1
Lj2C344G7 Lonicera japonica HOM05D000104 ORTHO05D006385 1.6e-30 137.9 376 35.1
MSTRG.16362 Avicennia marina HOM05D000104 ORTHO05D006385 1.1e-28 131.7 368 34.5
THA.LOC104806217 Tarenaya hassleriana HOM05D000104 ORTHO05D006385 1.1e-28 131.7 356 32.6
THA.LOC104811657 Tarenaya hassleriana HOM05D000104 ORTHO05D006385 4.4e-28 129.8 314 34.1
MBI18_g05699_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006385 5.7e-28 129.4 391 30.4
THA.LOC104812917 Tarenaya hassleriana HOM05D000104 ORTHO05D006385 9.7e-28 128.6 352 32.7
GSVIVG01012117001 Vitis vinifera HOM05D000104 ORTHO05D006385 4.8e-27 126.3 246 39.8
ECA246G5074 Erigeron canadensis HOM05D000104 ORTHO05D006385 8.5e-24 115.5 357 31.1
Nitab4.5_0006786g0010 Nicotiana tabacum HOM05D000104 ORTHO05D006385 3.2e-23 113.6 374 30.2
DCAR_003772 Daucus carota HOM05D000104 ORTHO05D006385 4.2e-23 113.2 259 33.6
Aa31LG9G8370 Aethionema arabicum HOM05D000104 ORTHO05D006385 3.6e-22 110.2 371 29.1
vmacro11005 Vaccinium macrocarpon HOM05D000104 ORTHO05D006385 4.0e-21 106.7 384 33.3
Eucgr.E04303 Eucalyptus grandis HOM05D000104 ORTHO05D006385 2.0e-20 104.4 403 30.3
AT5G44800 Arabidopsis thaliana HOM05D000104 ORTHO05D006385 5.7e-20 102.8 371 29.4
BcaC09g48065 Brassica carinata HOM05D000104 ORTHO05D006385 5.7e-20 102.8 379 31.9
AL8G14720 Arabidopsis lyrata HOM05D000104 ORTHO05D006385 7.5e-20 102.4 377 30.8
Peaxi162Scf00199g00049 Petunia axillaris HOM05D000104 ORTHO05D006385 6.3e-19 99.4 371 29.9
Thhalv10000738m.g Eutrema salsugineum HOM05D000104 ORTHO05D006385 1.8e-18 97.8 348 30.5
A09p21350 Brassica napus HOM05D000104 ORTHO05D006385 2.4e-18 97.4 356 30.6
BraA09t37740Z Brassica rapa HOM05D000104 ORTHO05D006385 4.1e-18 96.7 356 30.6
DCAR_007783 Daucus carota HOM05D000104 ORTHO05D006385 4.1e-18 96.7 249 32.1
Carub.0008s0345 Capsella rubella HOM05D000104 ORTHO05D006385 7.0e-18 95.9 379 29.6
Sopen02g017710 Solanum pennellii HOM05D000104 ORTHO05D006385 9.1e-18 95.5 378 29.1
Aqoxy1G01408 Aquilegia oxysepala HOM05D000104 ORTHO05D006385 1.2e-17 95.1 382 28.8
Sp2g09650 Schrenkiella parvula HOM05D000104 ORTHO05D006385 5.9e-17 92.8 371 28.8
EL10Ac7g17247 Beta vulgaris HOM05D000104 ORTHO05D006385 1.0e-16 92.0 292 30.5
Ah.08g212330 Amaranthus hybridus HOM05D000104 ORTHO05D006385 1.3e-16 91.7 366 28.7
AUR62042116 Chenopodium quinoa HOM05D000104 ORTHO05D006385 5.0e-16 89.7 365 31.5
Solyc02g068560.3 Solanum lycopersicum HOM05D000104 ORTHO05D006385 6.5e-16 89.4 367 27.8
BolC9t55600H Brassica oleracea HOM05D000104 ORTHO05D006385 8.5e-16 89.0 367 29.4
Sc17g0004230 Simmondsia chinensis HOM05D000104 ORTHO05D006385 8.5e-16 89.0 378 29.9
Migut.E00892 Erythranthe guttata HOM05D000104 ORTHO05D006385 1.1e-15 88.6 360 31.1
BcaC04g21814 Brassica carinata HOM05D000104 ORTHO05D006385 1.9e-15 87.8 123 44.7
C09p27190 Brassica napus HOM05D000104 ORTHO05D006385 1.9e-15 87.8 123 44.7
PSO675G2846 Papaver somniferum HOM05D000104 ORTHO05D006385 1.9e-15 87.8 410 28.3
AUR62040328 Chenopodium quinoa HOM05D000104 ORTHO05D006385 2.5e-15 87.4 365 30.7
SHI24682 Sapria himalayana HOM05D000104 ORTHO05D006385 5.5e-15 86.3 253 30.0
BcaB07g30923 Brassica carinata HOM05D000104 ORTHO05D006385 7.2e-15 85.9 379 29.6
ECA238G2949 Erigeron canadensis HOM05D000104 ORTHO05D006385 7.2e-15 85.9 364 29.1
Migut.E01638 Erythranthe guttata HOM05D000104 ORTHO05D006385 7.2e-15 85.9 360 30.3
PGR042G0503 Punica granatum HOM05D000104 ORTHO05D006385 6.1e-14 82.8 381 28.1
Cc09_g05810 Coffea canephora HOM05D000104 ORTHO05D006385 8.0e-14 82.4 401 27.9
CAN.G149.4 Capsicum annuum HOM05D000104 ORTHO05D006385 5.2e-13 79.7 373 27.9
PSO541G6099 Papaver somniferum HOM05D000104 ORTHO05D006385 2.0e-12 77.8 401 27.4
CARHR178070 Cardamine hirsuta HOM05D000104 ORTHO05D006385 1.3e-11 75.1 386 26.2
BcaB01g05351 Brassica carinata HOM05D000104 ORTHO05D006385 1.7e-11 74.7 257 30.0
unitig_748.g8075 Utricularia gibba HOM05D000104 ORTHO05D006385 2.8e-11 73.9 358 29.3
Os07g0497100 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006385 8.3e-11 72.4 339 28.3
ATR0697G167 Amborella trichopoda HOM05D000104 ORTHO05D006385 1.4e-10 71.6 371 27.0
HanXRQChr12g0381521 Helianthus annuus HOM05D000104 ORTHO05D006385 1.8e-10 71.2 38 76.3
Lsat_1_v5_gn_3_107981 Lactuca sativa HOM05D000104 ORTHO05D006385 4.1e-10 70.1 38 76.3
SGA_v2.0_scaffold341G49372 Striga asiatica HOM05D000104 ORTHO05D006385 4.1e-10 70.1 113 38.9
CBR_g10982 Chara braunii HOM05D000104 ORTHO05D006385 2.0e-09 67.8 63 52.4
AagrBONN_evm.TU.Sc2ySwM_117.2457 Anthoceros agrestis HOM05D000104 ORTHO05D006385 3.5e-09 67.0 38 78.9
CDE11G0916 Ceratophyllum demersum HOM05D000104 ORTHO05D006385 3.5e-09 67.0 284 27.1
HanXRQChr14g0440251 Helianthus annuus HOM05D000104 ORTHO05D006385 7.7e-09 65.9 120 34.2
Lsat_1_v5_gn_4_139440 Lactuca sativa HOM05D000104 ORTHO05D006385 7.7e-09 65.9 362 26.8
SEGI_40217 Sequoiadendron giganteum HOM05D000104 ORTHO05D006385 1.3e-08 65.1 38 76.3
CDE05G3360 Ceratophyllum demersum HOM05D000104 ORTHO05D006385 2.3e-08 64.3 331 26.9
SMO352G0050 Selaginella moellendorffii HOM05D000104 ORTHO05D006385 3.8e-08 63.5 95 44.2
Nitab4.5_0000443g0050 Nicotiana tabacum HOM05D007740 ORTHO05D006385 1.5e-07 61.6 342 25.7
Mapoly0162s0017 Marchantia polymorpha HOM05D000104 ORTHO05D006385 3.3e-07 60.5 46 60.9
Pp3c3_23680 Physcomitrium patens HOM05D000104 ORTHO05D006385 2.1e-06 57.8 41 53.7
QL08p055576 Quercus lobata HOM05D000078 ORTHO05D000007 4.7e-06 56.6 40 62.5
QL12p008788 Quercus lobata HOM05D014996 ORTHO05D000022 6.1e-06 56.2 38 73.7


User provided reference genes

Program Settings