Gene: Sopen02g017710

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g017710
  • Transcript Identifier Sopen02g017710.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 41796944-41811885 : negative

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g017710.1

Descriptions

  • Description chromatin remodeling 4 (CHR4) | FUNCTIONS IN: in 6 functions | INVOLVED IN: chromatin assembly or disassembly, regulation of transcription | LOCATED IN: chromatin, nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , Chromo domain , SNF2-related , DEAD-like helicase, N-terminal , Chromo domain-like , Zinc finger, FYVE/PHD-type , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , Homeodomain-related , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE)
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G44800

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042735
ISO
PLAZA Integrative Orthologyprotein body AT5G44800
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G44800
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G44800

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR023780 Chromo domain
IPR009057 Homeobox-like domain superfamily
IPR016197 Chromo-like domain superfamily
IPR019787 Zinc finger, PHD-finger
IPR009463 Domain of unknown function DUF1087
IPR038718 SNF2-like, N-terminal domain superfamily
IPR011011 Zinc finger, FYVE/PHD-type
IPR000330 SNF2, N-terminal
IPR000953 Chromo/chromo shadow domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001965 Zinc finger, PHD-type
Mapman id Description
12.4.7.2 Chromatin organisation.nucleosome remodeling.CHD chromatin remodeling activities.CHD3-type chromatin remodeling factor (PKL/PKR)