Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 6.1e-123 444.1 218 100.0
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.4e-119 433.0 213 99.1
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.2e-95 352.1 227 75.8
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 5.6e-92 341.3 227 74.4
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 3.7e-88 328.6 222 73.0
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 8.4e-80 300.8 232 68.1
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 5.4e-79 298.1 236 65.7
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 8.6e-77 290.8 235 63.8
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 4.7e-75 285.0 233 64.8
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.4e-74 283.5 226 61.9
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.2e-73 280.4 232 60.8
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 4.4e-73 278.5 221 62.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 5.8e-73 278.1 235 60.4
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 7.6e-73 277.7 231 61.9
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.7e-72 276.6 238 62.2
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.2e-72 276.2 234 60.3
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.2e-72 276.2 228 62.7
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.1e-71 273.9 221 62.9
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.1e-71 273.9 236 61.9
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.4e-71 273.5 226 61.5
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 5.4e-71 271.6 232 60.3
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.4e-71 271.6 232 63.4
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 7.1e-71 271.2 232 63.4
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.6e-70 270.0 234 59.8
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.6e-70 270.0 220 65.9
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 2.7e-70 269.2 236 60.6
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 7.8e-70 267.7 225 60.0
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 1.3e-69 266.9 224 64.3
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 2.3e-69 266.2 235 58.7
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.1e-69 265.0 224 63.4
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 5.1e-69 265.0 232 62.1
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 2.5e-68 262.7 224 59.8
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 2.5e-68 262.7 226 59.7
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.5e-68 262.7 238 59.2
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 5.6e-68 261.5 226 58.4
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.3e-67 260.4 233 57.9
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.3e-67 260.4 234 56.4
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.6e-67 258.8 231 59.3
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 8.1e-67 257.7 226 58.4
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.1e-66 257.3 224 60.3
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 2.4e-66 256.1 237 56.1
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.0e-65 253.1 234 55.1
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 2.2e-64 249.6 232 56.9
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.2e-64 249.6 237 57.0
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 3.8e-64 248.8 233 55.8
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 3.8e-64 248.8 224 58.9
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 4.9e-64 248.4 225 56.4
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 6.4e-64 248.1 234 54.7
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.1e-63 247.3 236 53.8
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.1e-63 247.3 220 58.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.4e-63 246.9 231 56.3
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.2e-62 243.8 239 52.7
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 1.6e-62 243.4 223 55.6
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.1e-62 243.0 241 52.7
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.5e-62 242.3 233 55.8
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 4.6e-62 241.9 230 54.3
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.0e-61 240.7 229 55.0
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 1.0e-61 240.7 227 57.3
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.3e-61 240.4 230 56.5
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.8e-61 240.0 228 56.6
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 3.0e-61 239.2 238 53.8
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 3.9e-61 238.8 227 54.2
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 6.7e-61 238.0 231 55.4
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 5.6e-60 235.0 225 57.8
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 9.6e-60 234.2 227 54.6
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.3e-59 233.8 226 53.5
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 2.1e-59 233.0 238 52.9
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 3.6e-59 232.3 226 54.9
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.4e-58 230.3 229 52.4
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.4e-58 230.3 229 52.4
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 4.0e-58 228.8 226 53.5
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 5.3e-58 228.4 226 53.1
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.3e-58 228.4 284 44.4
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.2e-57 227.3 228 53.1
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 2.0e-57 226.5 226 54.0
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 2.6e-57 226.1 226 51.3
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 4.5e-57 225.3 226 51.8
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 4.5e-57 225.3 235 54.5
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 4.5e-57 225.3 233 53.2
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 7.6e-57 224.6 112 99.1
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.2e-56 223.0 227 54.2
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.4e-55 220.3 227 51.1
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.4e-55 220.3 227 51.1
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.2e-55 219.2 226 51.8
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 3.2e-55 219.2 227 51.1
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 5.5e-55 218.4 220 53.6
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 7.1e-55 218.0 227 50.2
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 7.1e-55 218.0 227 50.2
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 7.1e-55 218.0 234 53.0
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.2e-54 217.2 227 50.7
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.6e-54 216.9 220 52.7
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.1e-54 216.5 227 51.1
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.1e-54 216.5 227 51.1
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 3.5e-54 215.7 232 49.6
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 4.6e-54 215.3 225 48.9
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 2.3e-53 213.0 306 42.5
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.5e-52 210.3 219 51.6
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.9e-52 209.9 228 50.0
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.9e-52 209.9 231 48.5
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 4.3e-52 208.8 228 49.6
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 4.0e-50 202.2 228 49.1
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 9.0e-50 201.1 176 63.1
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.3e-45 186.4 155 61.3
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 3.0e-45 186.0 215 48.4
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 4.3e-44 182.2 232 45.7
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 5.7e-44 181.8 198 50.0
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 5.7e-44 181.8 197 50.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 9.6e-44 181.0 222 45.9
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.8e-40 169.1 120 66.7
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.4e-39 167.2 161 54.0
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 2.5e-39 166.4 137 59.9
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.2e-38 164.1 223 44.8
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.0e-37 159.5 256 35.9
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.5e-36 157.1 205 45.9
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 3.3e-36 156.0 231 38.5
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.0e-29 132.9 198 39.9
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.0e-29 132.9 198 39.9
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 6.7e-29 131.7 251 31.9
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 7.4e-28 128.3 121 56.2
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 9.7e-28 127.9 212 34.4
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.8e-26 123.6 250 30.8
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.2e-25 120.9 297 28.3
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 7.9e-22 108.2 74 73.0
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.9e-21 105.9 120 50.8
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 9.1e-18 94.7 83 56.6
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.0e-12 77.0 94 48.9
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.5e-07 60.1 33 84.8
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 4.2e-07 59.3 31 83.9


User provided reference genes

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