Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 3.9e-247 857.8 476 100.0
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 1.9e-169 599.7 530 72.5
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.5e-145 519.6 519 57.4
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 1.1e-137 494.2 531 52.4
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 3.4e-134 482.6 534 53.0
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 7.5e-134 481.5 531 52.7
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 4.9e-133 478.8 543 52.7
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 9.2e-132 474.6 530 52.6
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 3.0e-130 469.5 562 51.2
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 5.1e-130 468.8 551 49.9
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 9.5e-129 464.5 534 51.3
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 2.1e-128 463.4 535 50.3
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 6.2e-128 461.8 535 51.6
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 6.2e-128 461.8 543 51.4
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 3.1e-127 459.5 535 51.4
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 5.2e-127 458.8 536 51.9
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 8.9e-127 458.0 535 50.3
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 2.0e-126 456.8 537 51.6
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 9.9e-126 454.5 532 51.3
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 9.9e-126 454.5 535 52.0
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 1.7e-125 453.8 534 49.1
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 3.8e-125 452.6 531 49.9
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 4.9e-125 452.2 534 50.6
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 2.4e-124 449.9 539 49.7
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 1.2e-123 447.6 517 51.1
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.2e-123 447.6 537 50.1
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 2.1e-123 446.8 538 50.2
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 3.5e-123 446.0 495 51.5
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 4.6e-123 445.7 531 50.1
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 6.0e-123 445.3 539 49.4
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 6.0e-123 445.3 542 49.4
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 3.0e-122 443.0 557 48.8
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 5.1e-122 442.2 533 49.3
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 6.6e-122 441.8 534 49.6
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 2.5e-121 439.9 531 49.2
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 3.3e-121 439.5 536 50.4
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 7.3e-121 438.3 484 52.5
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 2.8e-120 436.4 531 49.0
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 3.6e-120 436.0 548 48.5
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 6.2e-120 435.3 563 48.0
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.1e-119 434.5 540 48.1
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.1e-119 434.5 544 48.2
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.1e-119 434.5 547 47.7
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 1.4e-119 434.1 536 48.9
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.4e-119 434.1 544 48.7
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 3.1e-119 433.0 538 48.9
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 2.0e-118 430.3 516 49.2
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 4.4e-118 429.1 539 48.2
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 5.8e-118 428.7 545 47.7
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 5.8e-118 428.7 558 47.1
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 2.2e-117 426.8 530 48.5
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 6.4e-117 425.2 544 48.0
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 6.4e-117 425.2 530 48.1
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 8.4e-117 424.9 530 49.6
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 1.9e-116 423.7 540 47.8
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 2.4e-116 423.3 535 46.7
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 9.3e-116 421.4 541 47.5
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 9.3e-116 421.4 537 48.8
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 1.2e-115 421.0 541 47.3
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 1.2e-115 421.0 541 47.3
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 1.2e-115 421.0 521 47.8
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 3.5e-115 419.5 536 47.6
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 6.0e-115 418.7 537 47.3
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 7.8e-115 418.3 539 46.4
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 1.7e-114 417.2 521 47.4
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 3.9e-114 416.0 543 46.4
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 3.9e-114 416.0 548 50.0
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 6.6e-114 415.2 569 45.7
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 8.7e-114 414.8 583 45.1
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.1e-113 414.5 539 46.6
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 1.1e-113 414.5 547 46.4
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 1.5e-113 414.1 331 66.8
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 7.3e-113 411.8 535 47.3
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.8e-111 407.1 630 42.9
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 4.0e-111 406.0 528 46.8
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 3.8e-109 399.4 525 46.9
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 3.8e-109 399.4 536 47.0
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 6.4e-109 398.7 541 44.0
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 9.3e-108 394.8 528 46.8
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.2e-107 394.4 545 45.7
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.7e-107 393.3 552 44.2
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 6.0e-107 392.1 546 43.4
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 6.0e-107 392.1 519 46.1
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 2.3e-106 390.2 531 45.8
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.3e-104 384.4 497 47.9
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 6.9e-103 378.6 553 42.9
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.7e-101 374.0 495 45.3
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 7.1e-100 368.6 443 47.4
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 4.6e-99 365.9 324 59.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 4.6e-99 365.9 570 42.8
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 5.1e-98 362.5 524 42.4
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 1.1e-97 361.3 539 42.9
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 1.3e-96 357.8 498 45.2
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 5.8e-94 349.0 252 69.8
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 1.0e-90 338.2 436 45.0
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 8.7e-90 335.1 252 67.5
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 8.7e-90 335.1 550 39.5
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 3.7e-88 329.7 323 55.7
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 4.1e-87 326.2 544 41.0
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.0e-87 325.1 527 41.6
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.9e-84 317.4 527 41.0
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 4.2e-84 316.2 475 42.9
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.9e-78 295.8 534 40.6
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 6.5e-77 292.4 526 36.5
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 9.7e-73 278.5 220 62.7
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 9.1e-71 271.9 324 45.1
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 2.7e-67 260.4 382 42.9
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 4.4e-65 253.1 513 34.7
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 8.2e-64 248.8 321 42.4
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 3.2e-60 236.9 296 43.2
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 5.5e-60 236.1 141 76.6
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.1e-55 218.8 239 53.1
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 5.9e-54 216.1 169 67.5
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.7e-53 214.5 169 66.9
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 2.7e-51 207.2 364 38.5
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 1.6e-46 191.4 378 37.3
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 1.7e-45 188.0 253 41.1
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 5.5e-44 183.0 385 36.4
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 7.2e-44 182.6 248 39.5
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.3e-42 177.6 156 60.9
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.2e-41 175.3 234 41.0
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 3.7e-40 170.2 490 28.4
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.0e-34 152.1 208 40.9
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.8e-33 145.6 159 48.4
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 4.6e-30 136.7 244 38.1
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 2.1e-27 127.9 238 38.2
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 1.2e-25 122.1 69 85.5
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 6.4e-24 116.3 80 66.2
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.4e-23 115.2 64 85.9
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.3e-21 107.8 259 30.1
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.2e-19 102.1 249 36.1
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 4.7e-19 100.1 256 25.4
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 5.2e-18 96.7 248 32.3
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 1.5e-17 95.1 88 53.4
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 1.3e-13 82.0 60 63.3
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 1.7e-13 81.6 122 42.6
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 4.3e-12 77.0 126 31.7
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 4.0e-10 70.5 36 88.9
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 8.9e-10 69.3 132 33.3
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 9.2e-07 59.3 97 38.1


User provided reference genes

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