Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 2.5e-219 765.4 462 100.0
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 9.6e-118 427.9 477 60.0
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 1.2e-112 411.0 475 61.5
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 5.8e-107 392.1 474 54.4
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 7.2e-81 305.4 351 50.7
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 1.2e-75 288.1 350 46.6
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 3.5e-75 286.6 352 50.6
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.4e-73 278.5 349 49.0
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 6.7e-71 272.3 467 48.4
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 3.7e-69 266.5 310 50.0
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 4.8e-69 266.2 351 47.0
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.4e-68 264.6 310 49.7
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 1.4e-68 264.6 310 49.7
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 1.8e-68 264.2 480 46.5
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 1.3e-66 258.1 469 42.0
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.3e-66 258.1 356 43.0
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 1.1e-65 255.0 240 55.8
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 1.5e-65 254.6 240 55.0
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 1.5e-65 254.6 359 44.6
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 4.2e-65 253.1 506 42.3
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 9.4e-65 251.9 240 55.4
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 1.2e-64 251.5 342 45.9
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 3.6e-64 250.0 348 44.8
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 3.6e-64 250.0 366 45.6
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 6.1e-64 249.2 460 41.3
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 6.8e-63 245.7 347 43.8
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 1.5e-62 244.6 250 53.2
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 2.0e-62 244.2 475 44.8
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 7.5e-62 242.3 347 42.7
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.3e-61 241.5 350 44.6
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 2.8e-61 240.4 366 42.3
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 8.3e-61 238.8 287 49.8
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 1.4e-60 238.0 206 60.7
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 1.2e-59 235.0 429 43.1
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 1.2e-59 235.0 346 42.2
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 5.9e-59 232.6 399 39.8
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 1.0e-58 231.9 450 40.7
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 1.7e-58 231.1 272 51.1
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 2.3e-58 230.7 294 47.3
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 2.5e-57 227.3 361 43.5
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 7.2e-57 225.7 383 38.9
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 2.8e-56 223.8 418 38.3
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 1.0e-55 221.9 233 51.9
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 8.8e-55 218.8 220 51.8
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 1.5e-54 218.0 257 48.2
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 3.4e-54 216.9 294 47.3
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 3.4e-54 216.9 276 44.9
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 4.4e-54 216.5 270 47.4
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 9.8e-54 215.3 236 50.4
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 1.7e-53 214.5 416 37.5
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 2.2e-53 214.2 431 39.0
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 3.7e-53 213.4 179 58.7
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 4.1e-52 209.9 277 45.8
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 4.1e-52 209.9 172 59.3
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 5.4e-52 209.5 289 46.7
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 9.2e-52 208.8 287 42.5
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 9.2e-52 208.8 565 35.4
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 1.2e-51 208.4 311 46.6
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 2.7e-51 207.2 211 50.7
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 7.8e-51 205.7 235 48.5
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.0e-50 205.3 395 38.5
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 2.9e-50 203.8 217 53.0
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 3.8e-50 203.4 410 37.1
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 5.0e-50 203.0 328 42.4
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.5e-49 201.4 564 36.0
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 3.3e-49 200.3 298 43.3
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 3.3e-49 200.3 419 37.5
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 3.3e-49 200.3 277 43.0
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 9.5e-49 198.7 565 31.3
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 2.1e-48 197.6 237 46.0
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 2.8e-48 197.2 217 50.2
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 4.7e-48 196.4 272 43.0
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 4.7e-48 196.4 272 43.0
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 6.1e-48 196.1 342 43.0
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 8.0e-48 195.7 275 43.6
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 3.0e-47 193.7 211 48.3
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 4.0e-47 193.4 261 44.4
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 5.2e-47 193.0 233 45.9
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 6.8e-47 192.6 157 60.5
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 1.5e-46 191.4 344 41.3
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 1.5e-46 191.4 344 41.3
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 4.4e-46 189.9 231 45.5
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 4.4e-46 189.9 220 47.7
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 5.7e-46 189.5 284 40.5
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 7.5e-46 189.1 210 49.0
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 7.5e-46 189.1 212 48.1
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 7.5e-46 189.1 287 41.5
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 1.3e-45 188.3 264 43.9
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 1.3e-45 188.3 210 48.6
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 6.4e-45 186.0 271 43.9
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 4.1e-44 183.3 269 40.9
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 1.6e-43 181.4 381 39.9
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 1.0e-42 178.7 282 41.1
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 3.9e-42 176.8 337 38.6
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 2.3e-39 167.5 277 38.3
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 5.8e-38 162.9 275 38.9
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 1.1e-36 158.7 198 43.4
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 1.0e-34 152.1 263 42.6
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 1.3e-34 151.8 164 47.0
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 1.3e-34 151.8 156 52.6
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 4.3e-33 146.7 297 38.7
QL03p062461 Quercus lobata HOM05D006873 ORTHO05D008668 4.3e-33 146.7 87 88.5
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 7.3e-33 146.0 280 36.1
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 1.6e-32 144.8 158 46.8
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 3.6e-32 143.7 181 40.9
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 1.3e-29 135.2 192 38.0
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 3.7e-29 133.7 283 34.3
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 2.4e-28 131.0 261 36.4
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 5.1e-26 123.2 167 37.1
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 6.6e-26 122.9 214 36.9
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 6.4e-21 106.3 72 69.4
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 5.8e-14 83.2 64 59.4
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 9.3e-12 75.9 65 53.8
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.5e-09 68.6 64 50.0
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.5e-09 67.8 169 30.8


User provided reference genes

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