Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 2.1e-288 995.0 497 100.0
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.6e-174 616.7 511 65.6
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 2.3e-173 612.8 459 69.9
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 6.6e-173 611.3 513 64.5
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 8.6e-173 610.9 469 69.1
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 3.3e-172 609.0 459 69.5
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 3.3e-172 609.0 459 69.5
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 9.5e-172 607.4 459 69.5
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.2e-171 607.1 500 65.4
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.6e-171 606.7 455 70.1
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 1.6e-171 606.7 461 68.8
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 4.7e-171 605.1 489 66.1
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 6.2e-171 604.7 459 68.2
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 6.2e-171 604.7 457 69.4
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 1.1e-170 604.0 459 68.2
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.1e-170 604.0 456 69.7
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 4.0e-170 602.1 457 68.9
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 5.2e-170 601.7 466 67.2
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 6.8e-170 601.3 457 68.3
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.2e-169 600.5 489 65.6
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 4.4e-169 598.6 454 68.5
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 7.5e-169 597.8 456 68.9
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.3e-168 597.0 466 66.3
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.7e-168 596.7 456 68.0
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 3.7e-168 595.5 455 68.1
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 3.7e-168 595.5 523 63.9
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 3.7e-168 595.5 456 68.2
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 8.3e-168 594.3 459 67.5
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 3.2e-167 592.4 485 63.7
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 5.4e-167 591.7 482 64.9
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 9.2e-167 590.9 486 64.0
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 9.2e-167 590.9 458 66.8
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 1.6e-166 590.1 482 66.0
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 2.1e-166 589.7 458 66.6
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 7.8e-166 587.8 455 66.2
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.7e-165 586.6 510 62.7
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 6.6e-165 584.7 457 66.1
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.5e-164 583.6 457 66.1
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 2.5e-164 582.8 498 63.3
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 5.6e-164 581.6 458 66.4
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 7.3e-164 581.3 501 61.5
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 9.5e-164 580.9 459 66.0
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 9.5e-164 580.9 457 66.1
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 2.8e-163 579.3 455 66.8
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 3.6e-163 578.9 455 65.7
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.4e-162 577.0 500 63.2
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 1.4e-162 577.0 455 65.9
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 3.1e-162 575.9 454 65.4
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 3.1e-162 575.9 483 63.4
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.6e-161 572.8 499 61.5
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 4.4e-161 572.0 456 64.0
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 5.8e-161 571.6 451 64.3
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.7e-160 570.1 451 64.1
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.7e-160 570.1 451 64.1
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.7e-160 570.1 451 64.1
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 2.9e-160 569.3 455 65.1
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 4.9e-160 568.5 450 64.7
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 8.4e-160 567.8 442 67.4
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.4e-159 567.0 450 64.0
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 7.1e-159 564.7 448 66.1
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 8.6e-157 557.8 501 59.7
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.9e-156 556.6 456 64.7
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.9e-156 556.6 491 61.7
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 2.5e-156 556.2 513 59.6
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.2e-155 553.9 467 63.2
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 1.6e-155 553.5 459 63.0
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 2.1e-155 553.1 457 63.7
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 1.1e-154 550.8 457 65.4
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.1e-154 550.8 456 62.5
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 2.4e-154 549.7 457 63.9
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 3.1e-154 549.3 466 62.7
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 5.2e-154 548.5 501 60.1
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 6.8e-154 548.1 456 64.0
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.2e-153 547.4 454 65.0
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.2e-153 547.4 492 61.4
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.5e-153 547.0 482 60.6
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 2.9e-152 542.7 435 66.0
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 6.4e-152 541.6 502 59.4
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 6.4e-152 541.6 435 64.8
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 3.2e-151 539.3 490 59.4
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.2e-150 537.3 455 63.1
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 2.1e-150 536.6 496 58.7
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 2.7e-150 536.2 471 60.9
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 2.7e-150 536.2 505 58.8
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 6.0e-150 535.0 460 60.9
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 6.0e-150 535.0 457 62.1
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 3.0e-149 532.7 484 59.7
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 3.0e-149 532.7 452 61.3
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.1e-149 531.9 418 65.6
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.1e-149 531.9 418 65.6
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.1e-148 530.8 493 58.4
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.9e-148 530.0 493 58.4
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 3.6e-147 525.8 457 61.3
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.1e-146 524.2 457 60.8
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.1e-146 524.2 457 59.7
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 2.4e-146 523.1 480 57.7
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.8e-145 518.5 519 55.7
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 1.1e-143 514.2 496 57.7
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 5.4e-143 511.9 437 61.8
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 5.1e-141 505.4 437 61.6
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 5.8e-137 491.9 555 50.8
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.3e-133 480.7 484 52.9
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 8.7e-133 478.0 446 57.0
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.1e-132 477.6 635 46.6
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 6.9e-130 468.4 665 45.3
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.2e-128 463.4 474 53.2
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 9.6e-124 448.0 501 52.3
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 1.9e-119 433.7 596 45.0
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 4.5e-105 386.0 433 50.1
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.8e-104 382.9 519 46.2
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.1e-103 381.3 453 46.6
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.3e-100 369.8 302 64.2
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 9.1e-98 361.7 295 65.4
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 1.5e-92 344.4 433 43.2
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 7.5e-92 342.0 460 42.6
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 3.9e-64 250.0 385 37.9
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 3.5e-57 226.9 122 85.2
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.1e-49 201.1 494 28.9
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 4.3e-47 193.4 207 52.7
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 6.0e-41 172.9 110 77.3
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.9e-39 167.9 274 42.0
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 6.6e-32 142.9 303 36.3
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 8.7e-32 142.5 103 66.0
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 2.4e-29 134.4 67 88.1
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.8e-28 129.8 73 89.0
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.9e-26 124.8 85 72.9
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 9.3e-26 122.5 84 72.6
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 3.1e-21 107.5 80 65.0
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.9e-18 98.2 53 81.1
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 7.4e-15 86.3 42 92.9
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 2.6e-12 77.8 61 63.9
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.5e-12 77.0 44 81.8
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 6.5e-11 73.2 70 60.0
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 2.7e-09 67.8 38 76.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 1.5e-07 62.0 39 69.2
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.3e-06 58.9 63 55.6


User provided reference genes

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