Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p043450 Quercus lobata HOM05D005906 ORTHO05D007359 4.6e-120 434.9 271 100.0
Cfa008717 Carpinus fangiana HOM05D005906 ORTHO05D007359 1.4e-87 327.0 242 87.2
CiPaw.05G166700 Carya illinoinensis HOM05D005906 ORTHO05D007359 1.3e-85 320.5 245 86.5
Haze_11727 Corylus avellana HOM05D005906 ORTHO05D007359 6.3e-85 318.2 277 78.3
Thecc.02G295800 Theobroma cacao HOM05D005906 ORTHO05D007359 1.8e-79 300.1 243 78.2
Gorai.002G167700 Gossypium raimondii HOM05D005906 ORTHO05D007359 2.3e-79 299.7 244 78.7
Prupe.1G345100 Prunus persica HOM05D005906 ORTHO05D007359 5.2e-79 298.5 243 81.5
Gohir.D01G138300 Gossypium hirsutum HOM05D005906 ORTHO05D007359 6.7e-79 298.1 244 78.3
Atru.chr11.1316 Acer truncatum HOM05D005906 ORTHO05D007359 2.0e-78 296.6 243 78.6
Manes.03G080900 Manihot esculenta HOM05D005906 ORTHO05D007359 3.3e-78 295.8 243 73.7
Duzib251G0270 Durio zibethinus HOM05D005906 ORTHO05D007359 5.7e-78 295.0 247 76.5
FAN07G0309 Fragaria x ananassa HOM05D005906 ORTHO05D007359 1.3e-77 293.9 237 80.6
TWI74G1493 Tripterygium wilfordii HOM05D005906 ORTHO05D007359 1.3e-77 293.9 242 80.2
Gohir.A01G145818 Gossypium hirsutum HOM05D005906 ORTHO05D007359 2.8e-77 292.7 244 77.9
MD16G1000200 Malus domestica HOM05D005906 ORTHO05D007359 3.7e-77 292.4 243 79.8
RcHm_v2.0_Chr4g0446421 Rosa chinensis HOM05D005906 ORTHO05D007359 4.8e-77 292.0 243 79.8
FAN17G1621 Fragaria x ananassa HOM05D005906 ORTHO05D007359 1.1e-76 290.8 243 79.0
Glyma.12G028100 Glycine max HOM05D005906 ORTHO05D007359 1.4e-76 290.4 257 72.0
FvH4_4g36700 Fragaria vesca HOM05D005906 ORTHO05D007359 1.8e-76 290.0 243 78.6
MD13G1008000 Malus domestica HOM05D005906 ORTHO05D007359 1.8e-76 290.0 243 79.0
FAN12G0559 Fragaria x ananassa HOM05D005906 ORTHO05D007359 2.4e-76 289.7 237 79.7
Dinv12052 Davidia involucrata HOM05D005906 ORTHO05D007359 4.1e-76 288.9 243 75.7
Cpa.g.sc63.9 Carica papaya HOM05D005906 ORTHO05D007359 7.0e-76 288.1 243 77.4
Ciclev10030612m.g Citrus clementina HOM05D005906 ORTHO05D007359 3.5e-75 285.8 242 78.5
TWI53G0095 Tripterygium wilfordii HOM05D005906 ORTHO05D007359 4.5e-75 285.4 243 79.4
Potri.010G170400 Populus trichocarpa HOM05D005906 ORTHO05D007359 5.9e-75 285.0 249 70.3
ClCG09G001670 Citrullus lanatus HOM05D005906 ORTHO05D007359 7.7e-75 284.6 240 75.4
Lj3g0019719 Lotus japonicus HOM05D005906 ORTHO05D007359 5.0e-74 282.0 243 71.6
COL.COLO4_16625 Corchorus olitorius HOM05D005906 ORTHO05D007359 2.5e-73 279.6 236 64.4
CANSAT64G0121 Cannabis sativa HOM05D005906 ORTHO05D007359 5.5e-73 278.5 246 76.4
Ca_03031_v3 Cicer arietinum L. HOM05D005906 ORTHO05D007359 7.2e-73 278.1 243 72.0
Glyma.11G102600 Glycine max HOM05D005906 ORTHO05D007359 7.2e-73 278.1 258 69.0
Glyma.11G103100 Glycine max HOM05D005906 ORTHO05D007359 2.1e-72 276.6 258 70.2
VMungo1127G1981 Vigna mungo HOM05D005906 ORTHO05D007359 2.7e-72 276.2 259 69.1
MELO3C024279.2 Cucumis melo HOM05D005906 ORTHO05D007359 4.7e-72 275.4 240 75.8
TAR371G1124 Trochodendron aralioides HOM05D005906 ORTHO05D007359 6.1e-72 275.0 237 78.5
CSS0007611 Camellia sinensis var. sinensis HOM05D005906 ORTHO05D007359 2.3e-71 273.1 237 74.7
CsaV3_7G033650 Cucumis sativus L. HOM05D005906 ORTHO05D007359 2.3e-71 273.1 240 75.8
Eucgr.G02565 Eucalyptus grandis HOM05D005906 ORTHO05D007359 3.0e-71 272.7 237 74.3
Medtr4g074440 Medicago truncatula HOM05D005906 ORTHO05D007359 5.2e-71 271.9 243 67.1
MBI03_g33918_MAGBIO Magnolia biondii HOM05D005906 ORTHO05D007359 8.8e-71 271.2 244 72.5
Phvul.011G031500 Phaseolus vulgaris HOM05D005906 ORTHO05D007359 1.5e-70 270.4 245 69.8
TPR.G21563 Trifolium pratense HOM05D005906 ORTHO05D007359 7.5e-70 268.1 243 70.0
Nn3g18680 Nelumbo nucifera HOM05D005906 ORTHO05D007359 1.3e-69 267.3 244 74.6
Psat5g190360 Pisum sativum HOM05D005906 ORTHO05D007359 1.7e-69 266.9 243 68.3
Sed0021796 Sechium edule HOM05D005906 ORTHO05D007359 4.8e-69 265.4 240 68.3
GSVIVG01010209001 Vitis vinifera HOM05D005906 ORTHO05D007359 8.2e-69 264.6 243 76.5
arahy.Tifrunner.gnm1.ann1.LWY0NT Arachis hypogaea HOM05D005906 ORTHO05D007359 1.1e-68 264.2 257 68.1
PSO782G0435 Papaver somniferum HOM05D005906 ORTHO05D007359 1.8e-68 263.5 243 68.3
arahy.Tifrunner.gnm1.ann1.KE9NE3 Arachis hypogaea HOM05D005906 ORTHO05D007359 7.0e-68 261.5 257 67.7
Migut.N00351 Erythranthe guttata HOM05D005906 ORTHO05D007359 9.1e-68 261.2 257 63.0
PSO063G6838 Papaver somniferum HOM05D005906 ORTHO05D007359 1.2e-67 260.8 243 67.9
EL10Ac9g22918 Beta vulgaris HOM05D005906 ORTHO05D007359 3.5e-67 259.2 238 72.7
Oeu022359.1 Olea europaea HOM05D005906 ORTHO05D007359 5.9e-67 258.5 244 68.9
Lalb_Chr01g0001511 Lupinus albus HOM05D005906 ORTHO05D007359 7.7e-67 258.1 226 71.7
Aqoxy3G04280 Aquilegia oxysepala HOM05D005906 ORTHO05D007359 5.5e-65 251.9 243 64.6
ECA246G1682 Erigeron canadensis HOM05D005906 ORTHO05D007359 7.2e-65 251.5 251 65.7
Sc10g0007040 Simmondsia chinensis HOM05D005906 ORTHO05D007359 9.4e-65 251.1 242 67.4
CDE08G0300 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 1.2e-64 250.8 230 68.3
PGR142G1078 Punica granatum HOM05D005906 ORTHO05D007359 1.8e-63 246.9 240 72.1
AUR62017662 Chenopodium quinoa HOM05D005906 ORTHO05D007359 1.5e-62 243.8 266 63.2
DCAR_006599 Daucus carota HOM05D005906 ORTHO05D007359 1.5e-62 243.8 244 61.5
Actinidia04315 Actinidia chinensis HOM05D005906 ORTHO05D007359 4.4e-62 242.3 239 66.9
Lju1295A4T31 Lonicera japonica HOM05D005906 ORTHO05D007359 7.5e-62 241.5 224 67.9
Thhalv10020134m.g Eutrema salsugineum HOM05D005906 ORTHO05D007359 9.8e-62 241.1 223 66.8
Solyc04g008700.3 Solanum lycopersicum HOM05D005906 ORTHO05D007359 9.8e-62 241.1 231 61.9
Sopen04g003870 Solanum pennellii HOM05D005906 ORTHO05D007359 9.8e-62 241.1 225 62.7
CAN.G419.29 Capsicum annuum HOM05D005906 ORTHO05D007359 2.2e-61 240.0 231 61.0
Sp3g17850 Schrenkiella parvula HOM05D005906 ORTHO05D007359 2.2e-61 240.0 223 60.5
Aa31LG8G6610 Aethionema arabicum HOM05D005906 ORTHO05D007359 1.1e-60 237.7 222 62.6
HanXRQChr17g0540691 Helianthus annuus HOM05D005906 ORTHO05D007359 1.1e-60 237.7 251 58.6
Peaxi162Scf00329g00515 Petunia axillaris HOM05D005906 ORTHO05D007359 1.1e-60 237.7 231 67.5
CARHR095360 Cardamine hirsuta HOM05D005906 ORTHO05D007359 2.4e-60 236.5 223 60.5
Rhsim09G0071900 Rhododendron simsii HOM05D005906 ORTHO05D007359 3.1e-60 236.1 205 71.2
Lsat_1_v5_gn_0_9300 Lactuca sativa HOM05D005906 ORTHO05D007359 9.1e-60 234.6 240 64.6
Nitab4.5_0001983g0010 Nicotiana tabacum HOM05D005906 ORTHO05D007359 2.0e-59 233.4 257 57.2
BolC5t33205H Brassica oleracea HOM05D005906 ORTHO05D007359 3.5e-59 232.6 222 56.3
C05p44790 Brassica napus HOM05D005906 ORTHO05D007359 4.5e-59 232.3 222 56.3
A05p29280 Brassica napus HOM05D005906 ORTHO05D007359 7.7e-59 231.5 222 56.8
BraA05t21811Z Brassica rapa HOM05D005906 ORTHO05D007359 7.7e-59 231.5 222 55.9
SGA_v2.0_scaffold317G48430 Striga asiatica HOM05D005906 ORTHO05D007359 3.8e-58 229.2 208 72.6
Carub.0003s1972 Capsella rubella HOM05D005906 ORTHO05D007359 2.5e-57 226.5 223 59.2
unitig_26.g9977 Utricularia gibba HOM05D005906 ORTHO05D007359 7.2e-57 224.9 229 66.8
Nitab4.5_0000129g0240 Nicotiana tabacum HOM05D005906 ORTHO05D007359 2.1e-56 223.4 244 59.4
AUR62015199 Chenopodium quinoa HOM05D005906 ORTHO05D007359 4.7e-56 222.2 238 53.4
AL3G33350 Arabidopsis lyrata HOM05D005906 ORTHO05D007359 1.5e-54 217.2 200 56.5
Os10g0485000 Oryza sativa ssp. japonica HOM05D005906 ORTHO05D007359 1.5e-54 217.2 231 61.0
Zm00001eb221360 Zea mays HOM05D005906 ORTHO05D007359 5.7e-54 215.3 223 64.6
AT3G19840 Arabidopsis thaliana HOM05D005906 ORTHO05D007359 2.2e-53 213.4 223 58.3
SEGI_19557 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 6.3e-53 211.8 245 61.2
SEGI_30722 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 6.3e-53 211.8 245 61.2
ATR0618G367 Amborella trichopoda HOM05D005906 ORTHO05D007359 3.1e-52 209.5 158 67.1
BcaB06g26053 Brassica carinata HOM05D005906 ORTHO05D007359 1.1e-49 201.1 149 67.1
HanXRQChr13g0425271 Helianthus annuus HOM05D005906 ORTHO05D007359 1.2e-48 197.6 251 45.8
Mapoly0048s0088 Marchantia polymorpha HOM05D005906 ORTHO05D007359 1.7e-45 187.2 228 60.1
SMO347G0007 Selaginella moellendorffii HOM05D005906 ORTHO05D007359 4.9e-45 185.7 231 45.5
Pp3c7_20890 Physcomitrium patens HOM05D005906 ORTHO05D007359 5.0e-42 175.6 257 52.5
Pp3c11_2890 Physcomitrium patens HOM05D005906 ORTHO05D007359 8.0e-40 168.3 257 53.3
vmacro16014 Vaccinium macrocarpon HOM05D005906 ORTHO05D007359 1.6e-35 154.1 147 70.7
Psat7g176560 Pisum sativum HOM05D005906 ORTHO05D007359 2.5e-33 146.7 183 60.7
CBR_g3777 Chara braunii HOM05D005906 ORTHO05D007359 9.5e-33 144.8 206 52.9
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 1.6e-32 144.1 143 69.9
HPP92_015160 Vanilla planifolia HOM05D005906 ORTHO05D007359 5.4e-28 129.0 129 76.0
Hma1.2p1_0933F.1_g238315 Hydrangea macrophylla HOM05D005906 ORTHO05D007359 1.5e-25 120.9 105 60.0
Hma1.2p1_2428F.1_g322000 Hydrangea macrophylla HOM05D005906 ORTHO05D007359 1.5e-25 120.9 105 60.0
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 9.5e-25 118.2 94 63.8
CDE04G3187 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 1.2e-24 117.9 115 73.9
CDE04G0879 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 8.4e-21 105.1 96 57.3
Ca_03028_v3 Cicer arietinum L. HOM05D000001 ORTHO05D010984 2.3e-10 70.5 54 72.2
Cre09.g393551 Chlamydomonas reinhardtii HOM05D005906 ORTHO05D007359 1.5e-09 67.8 130 32.3
arahy.Tifrunner.gnm1.ann1.HBZ9IW Arachis hypogaea HOM05D005906 ORTHO05D007359 7.6e-06 55.5 69 47.8
MCO09G642 Micromonas commoda HOM05D005906 ORTHO05D007359 7.6e-06 55.5 147 27.9
Oeu006722.1 Olea europaea HOM05D005906 ORTHO05D007359 7.6e-06 55.5 44 61.4


User provided reference genes

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