Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 2.4e-164 582.4 358 100.0
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 3.0e-143 512.3 354 88.1
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 1.4e-140 503.4 355 88.7
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 7.9e-136 487.6 359 81.6
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 6.7e-135 484.6 359 81.3
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 4.8e-133 478.4 268 92.9
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 4.8e-133 478.4 268 92.9
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.1e-132 477.2 344 83.1
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 5.3e-132 474.9 345 84.9
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 9.1e-132 474.2 354 80.5
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 2.6e-131 472.6 364 82.7
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.2e-130 469.5 269 91.8
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 4.2e-129 465.3 361 80.9
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 7.2e-129 464.5 349 82.8
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 1.2e-128 463.8 347 81.3
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.6e-128 462.2 350 83.1
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.6e-128 462.2 350 82.9
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 6.1e-128 461.5 350 83.1
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 7.9e-128 461.1 269 89.6
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 1.5e-126 456.8 278 87.4
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 3.3e-126 455.7 348 80.2
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 4.4e-126 455.3 362 76.2
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 7.4e-126 454.5 266 88.3
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 2.8e-125 452.6 240 93.3
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 3.7e-125 452.2 237 94.1
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 2.4e-124 449.5 240 91.7
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 2.4e-124 449.5 239 93.3
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 4.1e-124 448.7 351 75.2
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 5.3e-124 448.4 239 91.2
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 9.1e-124 447.6 271 88.6
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 1.2e-123 447.2 348 78.4
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 2.0e-123 446.4 333 80.2
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.0e-123 446.4 267 88.8
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.0e-123 446.4 267 88.8
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 1.0e-122 444.1 249 90.0
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.3e-122 443.7 235 93.6
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 1.3e-122 443.7 350 75.1
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 1.3e-122 443.7 348 81.6
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.8e-122 442.2 254 88.6
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 5.0e-122 441.8 239 91.2
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 1.4e-121 440.3 351 80.3
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.5e-121 439.5 240 91.2
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 2.1e-120 436.4 239 90.4
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 2.1e-120 436.4 231 93.1
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 2.1e-120 436.4 240 90.4
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.7e-120 436.0 349 78.5
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 2.7e-120 436.0 349 78.5
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 4.7e-120 435.3 259 87.6
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 8.0e-120 434.5 239 90.0
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 1.8e-119 433.3 235 90.6
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.3e-119 433.0 349 78.2
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 3.0e-119 432.6 239 89.5
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 6.7e-119 431.4 352 81.8
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.1e-118 430.6 270 86.3
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.1e-118 430.6 270 86.3
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 2.0e-118 429.9 239 89.1
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 2.6e-118 429.5 235 91.1
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 3.3e-118 429.1 335 80.9
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 7.4e-118 427.9 222 95.0
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 1.3e-117 427.2 350 76.6
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 1.3e-117 427.2 348 75.3
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.2e-117 426.4 242 88.4
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 2.2e-117 426.4 337 76.0
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.8e-117 426.0 242 88.4
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 1.4e-116 423.7 222 92.8
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 1.8e-116 423.3 334 78.1
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 3.1e-116 422.5 351 74.9
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 3.1e-116 422.5 334 77.8
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 5.3e-116 421.8 342 75.7
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 9.1e-116 421.0 340 74.4
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 9.1e-116 421.0 337 76.3
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 9.1e-116 421.0 352 74.7
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 1.2e-115 420.6 257 83.7
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 5.0e-114 415.2 220 92.3
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 6.5e-114 414.8 220 92.7
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 3.2e-113 412.5 228 88.6
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 3.2e-113 412.5 350 77.1
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 3.2e-113 412.5 228 88.6
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 3.6e-112 409.1 235 87.2
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 3.6e-112 409.1 342 77.2
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 5.2e-111 405.2 220 90.0
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 6.7e-111 404.8 228 87.7
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 8.8e-111 404.4 228 87.3
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 8.8e-111 404.4 382 68.1
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 3.3e-110 402.5 232 86.2
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 4.4e-110 402.1 228 86.8
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 5.7e-110 401.7 232 87.5
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 2.8e-109 399.4 228 86.0
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 2.8e-109 399.4 228 86.0
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 2.8e-109 399.4 228 86.0
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 2.8e-109 399.4 228 86.0
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 4.8e-109 398.7 230 86.1
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 6.3e-109 398.3 430 62.3
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 6.3e-109 398.3 241 82.2
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 8.2e-109 397.9 233 86.3
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 1.4e-108 397.1 224 87.9
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 7.0e-108 394.8 209 92.8
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 9.1e-108 394.4 228 85.5
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 5.5e-105 385.2 261 76.6
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 1.2e-104 384.0 275 74.5
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 1.2e-104 384.0 241 80.5
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 6.1e-104 381.7 208 92.3
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 5.2e-103 378.6 226 81.4
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 8.3e-101 371.3 239 77.8
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 1.2e-96 357.5 290 80.0
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 9.2e-92 341.3 231 76.2
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.7e-90 337.0 181 92.3
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 1.4e-87 327.4 208 77.9
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 4.0e-87 325.9 240 70.4
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 4.0e-87 325.9 342 54.4
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.6e-86 323.2 228 74.6
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 3.2e-84 316.2 192 89.1
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 2.5e-81 306.6 569 38.0
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 8.0e-80 301.6 255 82.0
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 2.3e-79 300.1 282 68.4
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 6.8e-79 298.5 348 63.5
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 2.4e-76 290.0 219 66.2
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.3e-74 284.3 247 65.2
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 8.1e-72 275.0 207 70.5
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 4.4e-70 269.2 189 71.4
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 3.5e-67 259.6 150 84.7
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 6.8e-63 245.4 132 92.4
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.1e-59 233.8 225 57.8
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 8.7e-58 228.4 250 68.8
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 4.7e-56 222.6 195 64.6
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.7e-53 214.2 220 72.7
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 8.4e-53 211.8 270 59.6
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.4e-52 211.1 107 96.3
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 1.9e-52 210.7 205 68.8
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.2e-52 209.9 108 95.4
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 5.4e-52 209.1 107 96.3
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.9e-49 200.7 110 87.3
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.6e-48 196.4 107 89.7
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 6.9e-47 192.2 102 90.2
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 9.0e-47 191.8 106 89.6
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 9.9e-46 188.3 240 64.6
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 9.3e-44 181.8 92 94.6
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 3.0e-42 176.8 95 92.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 2.5e-41 173.7 95 91.6
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.4e-39 167.9 130 70.0
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.6e-38 163.7 91 85.7
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 5.6e-33 146.0 83 83.1
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 6.9e-31 139.0 71 91.5
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 6.9e-31 139.0 71 91.5
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 9.7e-25 118.6 189 56.1
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.8e-24 117.1 91 68.1
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 7.7e-22 109.0 152 68.4
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 2.2e-21 107.5 58 87.9
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.3e-18 97.4 132 52.3
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 9.1e-15 85.5 174 59.8
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 3.6e-11 73.6 60 63.3
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.1e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.8e-10 68.9 38 86.8
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 2.0e-09 67.8 103 45.6
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 3.1e-07 60.5 138 52.9
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.3e-07 59.7 45 64.4


User provided reference genes

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