Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p010098 Quercus lobata HOM05D003434 ORTHO05D037449 1.6e-52 209.1 105 100.0
QL08p019759 Quercus lobata HOM05D003434 ORTHO05D004465 1.2e-12 76.6 36 97.2
Eucgr.F01099 Eucalyptus grandis HOM05D003434 ORTHO05D004465 8.3e-09 63.9 38 76.3
QL09p045326 Quercus lobata HOM05D000071 ORTHO05D037449 1.4e-08 63.2 32 96.9
AT3G15460 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 1.8e-08 62.8 39 76.9
Medtr1g012990 Medicago truncatula HOM05D003434 ORTHO05D004465 2.4e-08 62.4 35 82.9
Medtr7g069430 Medicago truncatula HOM05D003434 ORTHO05D004465 2.4e-08 62.4 35 82.9
Ca_05552_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 3.1e-08 62.0 35 82.9
Ca_13044_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 3.1e-08 62.0 35 82.9
Glyma.08G255000 Glycine max HOM05D003434 ORTHO05D004465 3.1e-08 62.0 35 82.9
Psat3g183280 Pisum sativum HOM05D003434 ORTHO05D004465 3.1e-08 62.0 35 82.9
Psat6g028560 Pisum sativum HOM05D003434 ORTHO05D004465 3.1e-08 62.0 35 82.9
Psat6g129960 Pisum sativum HOM05D003434 ORTHO05D004465 3.1e-08 62.0 35 82.9
QL09p004329 Quercus lobata HOM05D000254 ORTHO05D000165 3.1e-08 62.0 34 91.2
TPR.G27919 Trifolium pratense HOM05D003434 ORTHO05D004465 3.1e-08 62.0 35 82.9
TPR.G38897 Trifolium pratense HOM05D003434 ORTHO05D004465 3.1e-08 62.0 35 82.9
VMungo1383G3569 Vigna mungo HOM05D003434 ORTHO05D004465 3.1e-08 62.0 35 82.9
AL3G28010 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 4.1e-08 61.6 35 82.9
Lj1g0009928 Lotus japonicus HOM05D003434 ORTHO05D004465 4.1e-08 61.6 35 80.0
Glyma.18G278000 Glycine max HOM05D003434 ORTHO05D004465 7.0e-08 60.8 35 80.0
Phvul.008G023000 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 7.0e-08 60.8 35 80.0
QL08p004271 Quercus lobata HOM05D000031 ORTHO05D001033 7.0e-08 60.8 30 100.0
QL08p035335 Quercus lobata HOM05D000013 ORTHO05D000011 7.0e-08 60.8 30 100.0
QL11p017235 Quercus lobata HOM05D000067 ORTHO05D000097 7.0e-08 60.8 30 100.0
DCAR_020982 Daucus carota HOM05D003434 ORTHO05D004465 9.2e-08 60.5 39 69.2
Lalb_Chr04g0258261 Lupinus albus HOM05D003434 ORTHO05D004465 9.2e-08 60.5 35 77.1
Lalb_Chr17g0340551 Lupinus albus HOM05D003434 ORTHO05D004465 9.2e-08 60.5 35 77.1
PGR083G2248 Punica granatum HOM05D003434 ORTHO05D004465 9.2e-08 60.5 35 80.0
QL08p035316 Quercus lobata HOM05D000013 ORTHO05D014604 9.2e-08 60.5 46 69.6
Glyma.02G114000 Glycine max HOM05D003434 ORTHO05D004465 1.6e-07 59.7 35 77.1
Manes.12G076100 Manihot esculenta HOM05D003434 ORTHO05D004465 1.6e-07 59.7 35 80.0
Phvul.001G137900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.6e-07 59.7 35 77.1
Phvul.011G077301 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.6e-07 59.7 35 77.1
QL07p003180 Quercus lobata HOM05D000007 ORTHO05D000039 1.6e-07 59.7 30 96.7
QL93p1903_0043 Quercus lobata HOM05D001466 ORTHO05D037449 1.6e-07 59.7 43 76.7
ClCG01G010880 Citrullus lanatus HOM05D003434 ORTHO05D004465 2.0e-07 59.3 35 80.0
ClCG03G016840 Citrullus lanatus HOM05D003434 ORTHO05D004465 2.0e-07 59.3 35 80.0
Cc05_g12350 Coffea canephora HOM05D003434 ORTHO05D004465 2.0e-07 59.3 35 77.1
MELO3C015338.2 Cucumis melo HOM05D003434 ORTHO05D004465 2.0e-07 59.3 35 80.0
CsaV3_1G039130 Cucumis sativus L. HOM05D003434 ORTHO05D004465 2.0e-07 59.3 35 80.0
Sed0008309 Sechium edule HOM05D003434 ORTHO05D004465 2.0e-07 59.3 35 80.0
Sed0012815 Sechium edule HOM05D003434 ORTHO05D004465 2.0e-07 59.3 35 80.0
SGA_v2.0_scaffold9G04937 Striga asiatica HOM05D003434 ORTHO05D004465 2.0e-07 59.3 35 80.0
Carub.0003s1518 Capsella rubella HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
CARHR043150 Cardamine hirsuta HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
Ciclev10008977m.g Citrus clementina HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 77.1
ECA236G4345 Erigeron canadensis HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
Thhalv10011666m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
HanXRQChr10g0306991 Helianthus annuus HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
HanXRQChr12g0374331 Helianthus annuus HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
Lsat_1_v5_gn_7_105060 Lactuca sativa HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
Lsat_1_v5_gn_9_57521 Lactuca sativa HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
Nitab4.5_0000677g0140 Nicotiana tabacum HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 77.1
Peaxi162Scf00069g00118 Petunia axillaris HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 77.1
QL04p097681 Quercus lobata HOM05D000432 ORTHO05D000320 2.7e-07 58.9 47 66.0
QL07p003866 Quercus lobata HOM05D000550 ORTHO05D000400 2.7e-07 58.9 37 81.1
Sp1g39500 Schrenkiella parvula HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
Sp3g13710 Schrenkiella parvula HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 80.0
Solyc04g016380.3 Solanum lycopersicum HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 77.1
Sopen04g008470 Solanum pennellii HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 77.1
PGSC0003DMG400012714 Solanum tuberosum HOM05D003434 ORTHO05D004465 2.7e-07 58.9 35 77.1
Aa31LG10G2140 Aethionema arabicum HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
Aa31LG8G2690 Aethionema arabicum HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
Cpa.g.sc80.31 Carica papaya HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
Thhalv10021159m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
Hma1.2p1_0687F.1_g203600 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 3.5e-07 58.5 47 63.8
MD11G1241800 Malus domestica HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
Prupe.4G185500 Prunus persica HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
THA.LOC104815549 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
THA.LOC104818062 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
Thecc.07G077100 Theobroma cacao HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
TWI38G2119 Tripterygium wilfordii HOM05D003434 ORTHO05D004465 3.5e-07 58.5 35 77.1
ATR0605G144 Amborella trichopoda HOM05D003434 ORTHO05D004465 4.5e-07 58.2 38 71.1
arahy.Tifrunner.gnm1.ann1.L3HXPU Arachis hypogaea HOM05D003434 ORTHO05D004465 4.5e-07 58.2 35 74.3
arahy.Tifrunner.gnm1.ann1.LC97RS Arachis hypogaea HOM05D003434 ORTHO05D004465 4.5e-07 58.2 35 74.3
Oeu019344.1 Olea europaea HOM05D003434 ORTHO05D004465 4.5e-07 58.2 30 86.7
Phvul.008G022950 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 4.5e-07 58.2 35 74.3
HPP92_020079 Vanilla planifolia HOM05D003434 ORTHO05D004465 4.5e-07 58.2 35 77.1
Actinidia09989 Actinidia chinensis HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
AL1G61260 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 77.1
BcaB04g20924 Brassica carinata HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
BcaB06g29576 Brassica carinata HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
BcaB06g29579 Brassica carinata HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
BcaC01g03873 Brassica carinata HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
BcaC09g48510 Brassica carinata HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
A01p38760 Brassica napus HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
A03p39310 Brassica napus HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
A05p33960 Brassica napus HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
C01p49000 Brassica napus HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
C03p47690 Brassica napus HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
C05p51700 Brassica napus HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
BolC3t17044H Brassica oleracea HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
BraA01t03909Z Brassica rapa HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
BraA03t13081Z Brassica rapa HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
BraA05t22218Z Brassica rapa HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
CSS0016315 Camellia sinensis var. sinensis HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
Carub.0001s4208 Capsella rubella HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 77.1
CARHR090510 Cardamine hirsuta HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 77.1
CiPaw.11G173200 Carya illinoinensis HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
Hma1.2p1_1415F.1_g281950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 5.9e-07 57.8 39 66.7
Lj8A158G80 Lonicera japonica HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
Potri.011G122200 Populus trichocarpa HOM05D003434 ORTHO05D004465 5.9e-07 57.8 35 74.3
QL04p003888 Quercus lobata HOM05D000367 ORTHO05D002159 5.9e-07 57.8 33 87.9
QL05p087852 Quercus lobata HOM05D000002 ORTHO05D000001 5.9e-07 57.8 31 93.5
QL07p027776 Quercus lobata HOM05D001956 ORTHO05D002035 5.9e-07 57.8 30 96.7
QL11p020167 Quercus lobata HOM05D000039 ORTHO05D000370 5.9e-07 57.8 37 81.1
Aqoxy4G01062 Aquilegia oxysepala HOM05D003434 ORTHO05D004465 7.7e-07 57.4 34 76.5
Cfa020548 Carpinus fangiana HOM05D003434 ORTHO05D004465 7.7e-07 57.4 38 68.4
CDE07G1591 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 7.7e-07 57.4 34 76.5
Haze_07077 Corylus avellana HOM05D003434 ORTHO05D004465 7.7e-07 57.4 38 68.4
Haze_09473 Corylus avellana HOM05D003434 ORTHO05D004465 7.7e-07 57.4 38 68.4
Haze_09477 Corylus avellana HOM05D003434 ORTHO05D004465 7.7e-07 57.4 38 68.4
Nn1g07032 Nelumbo nucifera HOM05D003434 ORTHO05D004465 7.7e-07 57.4 34 76.5
Potri.001G403100 Populus trichocarpa HOM05D003434 ORTHO05D004465 7.7e-07 57.4 35 74.3
Rhsim06G0196400 Rhododendron simsii HOM05D003434 ORTHO05D004465 7.7e-07 57.4 34 76.5
vmacro11838 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 7.7e-07 57.4 34 76.5
vmacro19412 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 7.7e-07 57.4 34 76.5
GSVIVG01028448001 Vitis vinifera HOM05D003434 ORTHO05D004465 7.7e-07 57.4 35 74.3
CiPaw.12G120800 Carya illinoinensis HOM05D003434 ORTHO05D004465 1.0e-06 57.0 35 74.3
FAN16G2559 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.0e-06 57.0 35 77.1
FAN25G0934 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.0e-06 57.0 35 77.1
Hma1.2p1_0400F.1_g144660 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.0e-06 57.0 35 71.4
Hma1.2p1_1789F.1_g302480 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.0e-06 57.0 35 71.4
Hma1.2p1_2288F.1_g318950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.0e-06 57.0 35 71.4
Hma1.2p1_3282F.1_g334840 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.0e-06 57.0 35 71.4
Lj1A848T59 Lonicera japonica HOM05D003434 ORTHO05D004465 1.0e-06 57.0 34 76.5
MD03G1224000 Malus domestica HOM05D003434 ORTHO05D004465 1.0e-06 57.0 34 76.5
Oeu011677.2 Olea europaea HOM05D003434 ORTHO05D004465 1.0e-06 57.0 28 89.3
Peaxi162Scf00130g00826 Petunia axillaris HOM05D003434 ORTHO05D004465 1.0e-06 57.0 35 77.1
Zm00001eb245760 Zea mays HOM05D003434 ORTHO05D004465 1.0e-06 57.0 34 76.5
CAN.G1237.13 Capsicum annuum HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 74.3
CDE04G2177 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 1.3e-06 56.6 34 76.5
CDE04G2432 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 1.3e-06 56.6 34 76.5
DCAR_019543 Daucus carota HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 74.3
Dinv08315 Davidia involucrata HOM05D003434 ORTHO05D002822 1.3e-06 56.6 35 71.4
FvH4_3g20570 Fragaria vesca HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 77.1
FAN11G3195 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 77.1
Nitab4.5_0000826g0070 Nicotiana tabacum HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 74.3
Nitab4.5_0001618g0180 Nicotiana tabacum HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 74.3
QL93p0092_0079 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-06 56.6 44 65.9
RcHm_v2.0_Chr5g0034581 Rosa chinensis HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 77.1
SalBow4G3038 Salvia bowleyana HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 74.3
SalBow6G7052 Salvia bowleyana HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 74.3
Sc21g0001090 Simmondsia chinensis HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 77.1
TAR626G1243 Trochodendron aralioides HOM05D003434 ORTHO05D004465 1.3e-06 56.6 35 71.4
Zm00001eb183430 Zea mays HOM05D003434 ORTHO05D004465 1.3e-06 56.6 34 76.5
CANSAT78G2387 Cannabis sativa HOM05D003434 ORTHO05D004465 1.7e-06 56.2 35 74.3
COL.COLO4_09433 Corchorus olitorius HOM05D003434 ORTHO05D004465 1.7e-06 56.2 35 74.3
Duzib213G0358 Durio zibethinus HOM05D003434 ORTHO05D004465 1.7e-06 56.2 35 74.3
Migut.H01924 Erythranthe guttata HOM05D003434 ORTHO05D004465 1.7e-06 56.2 30 83.3
Gohir.A11G282773 Gossypium hirsutum HOM05D003434 ORTHO05D004465 1.7e-06 56.2 35 74.3
Gohir.D11G296500 Gossypium hirsutum HOM05D003434 ORTHO05D004465 1.7e-06 56.2 35 74.3
Gorai.007G319600 Gossypium raimondii HOM05D003434 ORTHO05D004465 1.7e-06 56.2 35 74.3
MBI01_g15748_MAGBIO Magnolia biondii HOM05D003434 ORTHO05D004465 1.7e-06 56.2 35 74.3
Os02g0591800 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D004465 1.7e-06 56.2 34 73.5
Duzib170G0474 Durio zibethinus HOM05D003434 ORTHO05D004465 2.3e-06 55.8 35 74.3
QL03p040171 Quercus lobata HOM05D000852 ORTHO05D000657 2.3e-06 55.8 44 75.0
QL12p033758 Quercus lobata HOM05D000038 ORTHO05D000143 2.3e-06 55.8 29 96.6
unitig_0.g2416 Utricularia gibba HOM05D003434 ORTHO05D004465 2.3e-06 55.8 30 83.3
AT1G52930 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 2.9e-06 55.5 35 74.3
FAN21G0310 Fragaria x ananassa HOM05D003434 ORTHO05D004465 2.9e-06 55.5 35 74.3
PSO017G4384 Papaver somniferum HOM05D003434 ORTHO05D004465 2.9e-06 55.5 35 71.4
PSO170G0766 Papaver somniferum HOM05D003434 ORTHO05D004465 2.9e-06 55.5 35 71.4
PSO210G2253 Papaver somniferum HOM05D003434 ORTHO05D004465 2.9e-06 55.5 35 71.4
PSO832G4191 Papaver somniferum HOM05D003434 ORTHO05D004465 2.9e-06 55.5 35 71.4
QL93p2025_0086 Quercus lobata HOM05D000009 ORTHO05D000008 2.9e-06 55.5 41 73.2
Sabra11G0108200 Salix brachista HOM05D003434 ORTHO05D002822 2.9e-06 55.5 35 71.4
BolC1t04864H Brassica oleracea HOM05D003434 ORTHO05D004465 5.0e-06 54.7 35 71.4
Mapoly0044s0007 Marchantia polymorpha HOM05D003434 ORTHO05D004465 6.6e-06 54.3 38 68.4
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 6.6e-06 54.3 29 89.7
SMO353G0304 Selaginella moellendorffii HOM05D003434 ORTHO05D004465 6.6e-06 54.3 35 74.3
Hma1.2p1_3286F.1_g334890 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 8.6e-06 53.9 26 88.5


User provided reference genes

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